############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/oppar_1.22.0.tar.gz && rm -rf oppar.buildbin-libdir && mkdir oppar.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=oppar.buildbin-libdir oppar_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL oppar_1.22.0.zip && rm oppar_1.22.0.tar.gz oppar_1.22.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 24 3440k 24 859k 0 0 954k 0 0:00:03 --:--:-- 0:00:03 953k 80 3440k 80 2784k 0 0 1463k 0 0:00:02 0:00:01 0:00:01 1463k 100 3440k 100 3440k 0 0 1591k 0 0:00:02 0:00:02 --:--:-- 1591k install for i386 * installing *source* package 'oppar' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_init_oppar.c -o R_init_oppar.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c kernel_estimation.c -o kernel_estimation.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ks_test.c -o ks_test.o ks_test.c: In function 'ks_sample': ks_test.c:22:9: warning: unused variable 'mx_value' [-Wunused-variable] double mx_value = 0.0; ^~~~~~~~ C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o oppar.dll tmp.def R_init_oppar.o kernel_estimation.o ks_test.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/oppar.buildbin-libdir/00LOCK-oppar/00new/oppar/libs/i386 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'oppar' finding HTML links ... done OPPARList-class html bcm html eset html getSampleOutlier html getSubtypeProbes html gsva html maupin html opa html oppar html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'oppar' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c R_init_oppar.c -o R_init_oppar.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c kernel_estimation.c -o kernel_estimation.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c ks_test.c -o ks_test.o ks_test.c: In function 'ks_sample': ks_test.c:22:9: warning: unused variable 'mx_value' [-Wunused-variable] double mx_value = 0.0; ^~~~~~~~ C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o oppar.dll tmp.def R_init_oppar.o kernel_estimation.o ks_test.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/oppar.buildbin-libdir/oppar/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'oppar' as oppar_1.22.0.zip * DONE (oppar) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'oppar' successfully unpacked and MD5 sums checked