############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/normr_1.20.0.tar.gz && rm -rf normr.buildbin-libdir && mkdir normr.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=normr.buildbin-libdir normr_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL normr_1.20.0.zip && rm normr_1.20.0.tar.gz normr_1.20.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 22 2228k 22 491k 0 0 1010k 0 0:00:02 --:--:-- 0:00:02 1009k 100 2228k 100 2228k 0 0 1588k 0 0:00:01 0:00:01 --:--:-- 1589k install for i386 * installing *source* package 'normr' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -fopenmp -D_GLIBCXX_USE_C99 -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -fopenmp -D_GLIBCXX_USE_C99 -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c em.cpp -o em.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -fopenmp -D_GLIBCXX_USE_C99 -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c normr_init.c -o normr_init.o C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o normr.dll tmp.def RcppExports.o em.o normr_init.o -fopenmp -D_GLIBCXX_USE_C99 -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/normr.buildbin-libdir/00LOCK-normr/00new/normr/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'normr' Creating a new generic function for 'getClasses' in package 'normr' ** help *** installing help indices converting help for package 'normr' finding HTML links ... done NormRCountConfig-class html NormRFit-class html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/normr.buildbin-libdir/00LOCK-normr/00new/normr/help/normRFit.html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/normr.buildbin-libdir/00LOCK-normr/00new/normr/help/normrfit.html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/normr.buildbin-libdir/00LOCK-normr/00new/normr/help/NormRfit.html normR-diffR html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/normr.buildbin-libdir/00LOCK-normr/00new/normr/help/diffr.html finding level-2 HTML links ... done normR-enrichR html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/normr.buildbin-libdir/00LOCK-normr/00new/normr/help/enrichr.html normR-regimeR html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/normr.buildbin-libdir/00LOCK-normr/00new/normr/help/regimer.html normR html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/normr.buildbin-libdir/00LOCK-normr/00new/normr/help/normr.html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'normr' ** testing if installed package can be loaded from final location Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'normr' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'normr' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -fopenmp -D_GLIBCXX_USE_C99 -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -fopenmp -D_GLIBCXX_USE_C99 -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c em.cpp -o em.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -fopenmp -D_GLIBCXX_USE_C99 -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c normr_init.c -o normr_init.o C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o normr.dll tmp.def RcppExports.o em.o normr_init.o -fopenmp -D_GLIBCXX_USE_C99 -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/normr.buildbin-libdir/normr/libs/x64 ** testing if installed package can be loaded Warning: replacing previous import 'IRanges::windows' by 'grDevices::windows' when loading 'normr' * MD5 sums packaged installation of 'normr' as normr_1.20.0.zip * DONE (normr) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'normr' successfully unpacked and MD5 sums checked