############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/netresponse_1.54.0.tar.gz && rm -rf netresponse.buildbin-libdir && mkdir netresponse.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=netresponse.buildbin-libdir netresponse_1.54.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL netresponse_1.54.0.zip && rm netresponse_1.54.0.tar.gz netresponse_1.54.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 1 802k 1 15989 0 0 133k 0 0:00:06 --:--:-- 0:00:06 133k 100 802k 100 802k 0 0 744k 0 0:00:01 0:00:01 --:--:-- 744k install for i386 * installing *source* package 'netresponse' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c netresponse.c -o netresponse.o netresponse.c: In function 'mHPpost': netresponse.c:264:15: warning: unused variable 'prior_fields' [-Wunused-variable] const char *prior_fields[]={"Mumu","S2mu", ^~~~~~~~~~~~ netresponse.c: In function 'mLogLambda': netresponse.c:713:3: warning: 'U_p' may be used uninitialized in this function [-Wmaybe-uninitialized] vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlphaKsi, BetaKsi, KsiAlpha, KsiBeta, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ post_gamma, log_lambda, prior_alpha, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ U_p, U_hat, ~~~~~~~~~~~ datalen, dim1, dim2, data1, data2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Ns, ncentroids, implicitnoisevar); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ netresponse.c:713:3: warning: 'KsiBeta' may be used uninitialized in this function [-Wmaybe-uninitialized] netresponse.c:713:3: warning: 'KsiAlpha' may be used uninitialized in this function [-Wmaybe-uninitialized] netresponse.c:713:3: warning: 'BetaKsi' may be used uninitialized in this function [-Wmaybe-uninitialized] netresponse.c:713:3: warning: 'AlphaKsi' may be used uninitialized in this function [-Wmaybe-uninitialized] netresponse.c:713:3: warning: 'Mutilde' may be used uninitialized in this function [-Wmaybe-uninitialized] netresponse.c:713:3: warning: 'Mubar' may be used uninitialized in this function [-Wmaybe-uninitialized] netresponse.c:713:3: warning: 'S2mu' may be used uninitialized in this function [-Wmaybe-uninitialized] netresponse.c:713:3: warning: 'Mumu' may be used uninitialized in this function [-Wmaybe-uninitialized] C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o netresponse.dll tmp.def netresponse.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/netresponse.buildbin-libdir/00LOCK-netresponse/00new/netresponse/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'netresponse' finding HTML links ... done NetResponseModel-class html P.S html P.Sr html P.r.s html P.rS html P.rs.joint html P.rs.joint.individual html P.s.individual html P.s.r html PlotMixture html PlotMixtureBivariate html PlotMixtureMultivariate html PlotMixtureUnivariate html add.ellipse html bic.mixture html bic.mixture.multivariate html bic.mixture.univariate html bic.select.best.mode html centerData html check.matrix html check.network html continuous.responses html detect.responses html dna html enrichment.list.factor html enrichment.list.factor.minimal html factor.responses html factor.responses.minimal html filter.netw html filter.network html find.similar.features html generate.toydata html get.dat-NetResponseModel-method html get.mis html get.model.parameters html get.subnets-NetResponseModel-method html getqofz-NetResponseModel-method html independent.models html list.responses.continuous.multi html list.responses.continuous.single html list.responses.factor html list.responses.factor.minimal html list.significant.responses html listify.groupings html mixture.model html model.stats html netresponse-package html order.responses html osmo html pick.model.pairs html pick.model.parameters html plotPCA html plot_associations html plot_data html plot_expression html plot_matrix html plot_response html plot_responses html plot_scale html plot_subnet html read.sif html remove.negative.edges html response.enrichment html response2sample html sample2response html set.breaks html split.qofz html toydata html update.model.pair html vdp.mixt html vectorize.groupings html write.netresponse.results html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'netresponse' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c netresponse.c -o netresponse.o netresponse.c: In function 'mHPpost': netresponse.c:264:15: warning: unused variable 'prior_fields' [-Wunused-variable] const char *prior_fields[]={"Mumu","S2mu", ^~~~~~~~~~~~ netresponse.c: In function 'mLogLambda': netresponse.c:713:3: warning: 'U_p' may be used uninitialized in this function [-Wmaybe-uninitialized] vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlphaKsi, BetaKsi, KsiAlpha, KsiBeta, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ post_gamma, log_lambda, prior_alpha, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ U_p, U_hat, ~~~~~~~~~~~ datalen, dim1, dim2, data1, data2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Ns, ncentroids, implicitnoisevar); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ netresponse.c:713:3: warning: 'KsiBeta' may be used uninitialized in this function [-Wmaybe-uninitialized] netresponse.c:713:3: warning: 'KsiAlpha' may be used uninitialized in this function [-Wmaybe-uninitialized] netresponse.c:713:3: warning: 'BetaKsi' may be used uninitialized in this function [-Wmaybe-uninitialized] netresponse.c:713:3: warning: 'AlphaKsi' may be used uninitialized in this function [-Wmaybe-uninitialized] netresponse.c:713:3: warning: 'Mutilde' may be used uninitialized in this function [-Wmaybe-uninitialized] netresponse.c:713:3: warning: 'Mubar' may be used uninitialized in this function [-Wmaybe-uninitialized] netresponse.c:713:3: warning: 'S2mu' may be used uninitialized in this function [-Wmaybe-uninitialized] netresponse.c:713:3: warning: 'Mumu' may be used uninitialized in this function [-Wmaybe-uninitialized] C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o netresponse.dll tmp.def netresponse.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/netresponse.buildbin-libdir/netresponse/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'netresponse' as netresponse_1.54.0.zip * DONE (netresponse) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'netresponse' successfully unpacked and MD5 sums checked