############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/musicatk_1.4.0.tar.gz && rm -rf musicatk.buildbin-libdir && mkdir musicatk.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=musicatk.buildbin-libdir musicatk_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL musicatk_1.4.0.zip && rm musicatk_1.4.0.tar.gz musicatk_1.4.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 5 15.1M 5 879k 0 0 1241k 0 0:00:12 --:--:-- 0:00:12 1241k 20 15.1M 20 3144k 0 0 1829k 0 0:00:08 0:00:01 0:00:07 1829k 40 15.1M 40 6298k 0 0 2319k 0 0:00:06 0:00:02 0:00:04 2319k 66 15.1M 66 10.0M 0 0 2798k 0 0:00:05 0:00:03 0:00:02 2798k 96 15.1M 96 14.6M 0 0 3201k 0 0:00:04 0:00:04 --:--:-- 3201k 100 15.1M 100 15.1M 0 0 3256k 0 0:00:04 0:00:04 --:--:-- 3608k install for i386 * installing *source* package 'musicatk' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'musicatk' finding HTML links ... done add_flank_to_variants html finding level-2 HTML links ... done add_variant_type html annotate_replication_strand html annotate_transcript_strand html annotate_variant_length html annotate_variant_type html auto_predict_grid html auto_subset_sigs html build_custom_table html build_standard_table html built_tables html cluster_exposure html combine_count_tables html combine_predict_grid html compare_cosmic_v2 html compare_cosmic_v3 html compare_results html cosmic_v2_sigs html cosmic_v2_subtype_map html cosmic_v3_dbs_sigs html cosmic_v3_indel_sigs html cosmic_v3_sbs_sigs html cosmic_v3_sbs_sigs_exome html count_table-class html create_dbs78_table html create_musica html create_sbs192_table html create_sbs96_table html create_umap html dbs_musica html discover_signatures html dot-jsd html drop_annotation html exposure_differential_analysis html exposures html extract_count_tables html extract_variants html extract_variants_from_maf html extract_variants_from_maf_file html extract_variants_from_matrix html extract_variants_from_vcf html extract_variants_from_vcf_file html generate_result_grid html get_musica html indel_musica html k_select html musica-class html musica html musica_annot html musica_result-class html musica_result_grid-class html musica_sbs96 html musica_sbs96_tiny html musicatk html name_signatures html pipe html plot_cluster html plot_differential_analysis html plot_exposures html plot_heatmap html plot_sample_counts html plot_sample_reconstruction_error html plot_signatures html plot_umap html predict_exposure html rc html rep_range html res html res_annot html samp_annot html sample_names html select_genome html signatures html subset_musica_by_annotation html subset_musica_by_counts html subset_variant_by_type html subset_variants_by_samples html table_96 html table_selected html tables html umap html variants html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'musicatk' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'musicatk' as musicatk_1.4.0.zip * DONE (musicatk) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'musicatk' successfully unpacked and MD5 sums checked