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###
### Running command:
###
###   rm -rf musicatk.buildbin-libdir && mkdir musicatk.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=musicatk.buildbin-libdir musicatk_1.4.0.tar.gz
###
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install for i386

* installing *source* package 'musicatk' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'musicatk'
    finding HTML links ... done
    add_flank_to_variants                   html  
    finding level-2 HTML links ... done

    add_variant_type                        html  
    annotate_replication_strand             html  
    annotate_transcript_strand              html  
    annotate_variant_length                 html  
    annotate_variant_type                   html  
    auto_predict_grid                       html  
    auto_subset_sigs                        html  
    build_custom_table                      html  
    build_standard_table                    html  
    built_tables                            html  
    cluster_exposure                        html  
    combine_count_tables                    html  
    combine_predict_grid                    html  
    compare_cosmic_v2                       html  
    compare_cosmic_v3                       html  
    compare_results                         html  
    cosmic_v2_sigs                          html  
    cosmic_v2_subtype_map                   html  
    cosmic_v3_dbs_sigs                      html  
    cosmic_v3_indel_sigs                    html  
    cosmic_v3_sbs_sigs                      html  
    cosmic_v3_sbs_sigs_exome                html  
    count_table-class                       html  
    create_dbs78_table                      html  
    create_musica                           html  
    create_sbs192_table                     html  
    create_sbs96_table                      html  
    create_umap                             html  
    dbs_musica                              html  
    discover_signatures                     html  
    dot-jsd                                 html  
    drop_annotation                         html  
    exposure_differential_analysis          html  
    exposures                               html  
    extract_count_tables                    html  
    extract_variants                        html  
    extract_variants_from_maf               html  
    extract_variants_from_maf_file          html  
    extract_variants_from_matrix            html  
    extract_variants_from_vcf               html  
    extract_variants_from_vcf_file          html  
    generate_result_grid                    html  
    get_musica                              html  
    indel_musica                            html  
    k_select                                html  
    musica-class                            html  
    musica                                  html  
    musica_annot                            html  
    musica_result-class                     html  
    musica_result_grid-class                html  
    musica_sbs96                            html  
    musica_sbs96_tiny                       html  
    musicatk                                html  
    name_signatures                         html  
    pipe                                    html  
    plot_cluster                            html  
    plot_differential_analysis              html  
    plot_exposures                          html  
    plot_heatmap                            html  
    plot_sample_counts                      html  
    plot_sample_reconstruction_error        html  
    plot_signatures                         html  
    plot_umap                               html  
    predict_exposure                        html  
    rc                                      html  
    rep_range                               html  
    res                                     html  
    res_annot                               html  
    samp_annot                              html  
    sample_names                            html  
    select_genome                           html  
    signatures                              html  
    subset_musica_by_annotation             html  
    subset_musica_by_counts                 html  
    subset_variant_by_type                  html  
    subset_variants_by_samples              html  
    table_96                                html  
    table_selected                          html  
    tables                                  html  
    umap                                    html  
    variants                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'musicatk' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'musicatk' as musicatk_1.4.0.zip
* DONE (musicatk)