############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/mia_1.2.7.tar.gz && rm -rf mia.buildbin-libdir && mkdir mia.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=mia.buildbin-libdir mia_1.2.7.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL mia_1.2.7.zip && rm mia_1.2.7.tar.gz mia_1.2.7.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 1616k 100 1616k 0 0 2608k 0 --:--:-- --:--:-- --:--:-- 2615k install for i386 * installing *source* package 'mia' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'mia' finding HTML links ... done agglomerate-methods html calculateDMN html calculateDistance html calculateJSD html calculateUniFrac html estimateDivergence html finding level-2 HTML links ... done estimateDiversity html estimateDominance html estimateEvenness html estimateRichness html getAbundance html getExperimentCrossCorrelation html getPrevalence html isContaminant html loadFromMothur html loadFromQIIME2 html makePhyloseqFromTreeSummarizedExperiment html makeSummarizedExperimentFromBiom html makeTreeSummarizedExperimentFromDADA2 html makeTreeSummarizedExperimentFromPhyloseq html meltAssay html merge-methods html mia-datasets html mia-package html perSampleDominantTaxa html relabundance html runCCA html runDPCoA html runNMDS html splitByRanks html subsetSamples html summaries html taxonomy-methods html transformCounts html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'mia' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'mia' as mia_1.2.7.zip * DONE (mia) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'mia' successfully unpacked and MD5 sums checked