############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/methylumi_2.40.1.tar.gz && rm -rf methylumi.buildbin-libdir && mkdir methylumi.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methylumi.buildbin-libdir methylumi_2.40.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL methylumi_2.40.1.zip && rm methylumi_2.40.1.tar.gz methylumi_2.40.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 5616k 0 44359 0 0 281k 0 0:00:19 --:--:-- 0:00:19 281k 25 5616k 25 1455k 0 0 1263k 0 0:00:04 0:00:01 0:00:03 1263k 66 5616k 66 3747k 0 0 1744k 0 0:00:03 0:00:02 0:00:01 1744k 100 5616k 100 5616k 0 0 1995k 0 0:00:02 0:00:02 --:--:-- 1996k install for i386 * installing *source* package 'methylumi' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'methylumi' finding HTML links ... done CpGs html IDATsToMatrices html IDATtoMatrix html MethyLumi-class html finding level-2 HTML links ... done MethyLumiM-class html MethyLumiQC-class html MethyLumiSet-class html estimateM html extractBarcodeAndPosition html featureFilter html generics html getAssayDataNameSubstitutions html methylData-class html methylumIDAT html methylumi-package html methylumiGenerics html methylumiR html mldat html normalizeMethyLumiSet html plotSampleIntensities html qcplot html stripBeadExtras html tcgaPipeline html varFilter html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'methylumi' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'methylumi' as methylumi_2.40.1.zip * DONE (methylumi) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'methylumi' successfully unpacked and MD5 sums checked