############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/metaseqR2_1.6.1.tar.gz && rm -rf metaseqR2.buildbin-libdir && mkdir metaseqR2.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metaseqR2.buildbin-libdir metaseqR2_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL metaseqR2_1.6.1.zip && rm metaseqR2_1.6.1.tar.gz metaseqR2_1.6.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 52 2115k 52 1105k 0 0 1414k 0 0:00:01 --:--:-- 0:00:01 1414k 100 2115k 100 2115k 0 0 1719k 0 0:00:01 0:00:01 --:--:-- 1720k install for i386 * installing *source* package 'metaseqR2' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c pval.c -o pval.o pval.c: In function 'add_from_both_sides': pval.c:26:11: warning: unused variable 'esttotalperlength' [-Wunused-variable] double esttotalperlength = total/2; ^~~~~~~~~~~~~~~~~ C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o metaseqR2.dll tmp.def pval.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/metaseqR2.buildbin-libdir/00LOCK-metaseqR2/00new/metaseqR2/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'metaseqR2' finding HTML links ... done buildAnnotationDatabase html buildCustomAnnotation html combineBonferroni html combineHarmonic html combineMaxp html combineMinp html combineSimes html combineWeight html createSignalTracks html diagplotAvgFtd html diagplotBoxplot html diagplotCor html diagplotDeHeatmap html diagplotEdaseq html diagplotFiltered html diagplotFtd html diagplotMds html diagplotNoiseq html diagplotPairs html diagplotRoc html diagplotVenn html diagplotVolcano html downsampleCounts html estimateAufcWeights html estimateSimParams html getAnnotation html getDefaults html getInstalledAnnotations html getWeights html hg19pvalues html importCustomAnnotation html libsizeListMm9 html loadAnnotation html makeSimDataSd html makeSimDataTcc html metaTest html metaseqr2 html finding level-2 HTML links ... done metaseqrPlot html mm9GeneCounts html normalizeAbsseq html normalizeDeseq html normalizeDeseq2 html normalizeDss html normalizeEdaseq html normalizeEdger html normalizeNbpseq html normalizeNoiseq html read2count html readTargets html sampleListMm9 html statAbsseq html statBayseq html statDeseq html statDeseq2 html statDss html statEdger html statLimma html statNbpseq html statNoiseq html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'metaseqR2' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c pval.c -o pval.o pval.c: In function 'add_from_both_sides': pval.c:26:11: warning: unused variable 'esttotalperlength' [-Wunused-variable] double esttotalperlength = total/2; ^~~~~~~~~~~~~~~~~ C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o metaseqR2.dll tmp.def pval.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/metaseqR2.buildbin-libdir/metaseqR2/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'metaseqR2' as metaseqR2_1.6.1.zip * DONE (metaseqR2) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'metaseqR2' successfully unpacked and MD5 sums checked