############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/maigesPack_1.58.0.tar.gz && rm -rf maigesPack.buildbin-libdir && mkdir maigesPack.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=maigesPack.buildbin-libdir maigesPack_1.58.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL maigesPack_1.58.0.zip && rm maigesPack_1.58.0.tar.gz maigesPack_1.58.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 5 860k 5 47133 0 0 297k 0 0:00:02 --:--:-- 0:00:02 296k 100 860k 100 860k 0 0 1275k 0 --:--:-- --:--:-- --:--:-- 1276k install for i386 * installing *source* package 'maigesPack' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Minfo.c -o Minfo.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c bootstrapT.c -o bootstrapT.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c register.c -o register.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c robustCorr.c -o robustCorr.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c stats.c -o stats.o C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o maigesPack.dll tmp.def Minfo.o bootstrapT.o register.o robustCorr.o stats.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/maigesPack.buildbin-libdir/00LOCK-maigesPack/00new/maigesPack/libs/i386 ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'maigesPack' finding HTML links ... done MI html activeMod html activeModScoreHTML html activeNet html activeNetScoreHTML html addGeneGrps html addPaths html bootstrapCor html bootstrapMI html bootstrapT html boxplot-methods html bracketMethods html calcA html calcW html classifyKNN html classifyKNNsc html classifyLDA html classifyLDAsc html classifySVM html classifySVMsc html coerce-methods html compCorr html contrastsFitM html createMaigesRaw html createTDMS html deGenes2by2BootT html deGenes2by2Ttest html deGenes2by2Wilcox html deGenesANOVA html designANOVA html dim-methods html gastro html getLabels html heatmapsM html hierM html hierMde html image-methods html kmeansM html kmeansMde html loadData html maiges-class html maigesANOVA-class html maigesActMod-class html maigesActNet-class html maigesClass-class html maigesDE-class html maigesDEcluster-class html maigesPreRaw-class html maigesRaw-class html maigesRelNetB-class html maigesRelNetM-class html normLoc html normOLIN html normRepLoess html normScaleLimma html normScaleMarray html plot-methods html plotGenePair html print-methods html relNet2TGF html relNetworkB html relNetworkM html robustCorr html selSpots html show-methods html somM html somMde html summarizeReplicates html summary-methods html tableClass html tablesDE html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'maigesPack' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c Minfo.c -o Minfo.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c bootstrapT.c -o bootstrapT.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c register.c -o register.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c robustCorr.c -o robustCorr.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c stats.c -o stats.o C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o maigesPack.dll tmp.def Minfo.o bootstrapT.o register.o robustCorr.o stats.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/maigesPack.buildbin-libdir/maigesPack/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'maigesPack' as maigesPack_1.58.0.zip * DONE (maigesPack) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'maigesPack' successfully unpacked and MD5 sums checked