############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe --arch i386 CMD check --no-multiarch --install=check:imageHTS.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings imageHTS_1.44.1.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/imageHTS.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: i386-w64-mingw32 (32-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'imageHTS/DESCRIPTION' ... OK * this is package 'imageHTS' version '1.44.1' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .BBSoptions These were most likely included in error. See section 'Package structure' in the 'Writing R Extensions' manual. * checking for portable file names ... OK * checking whether package 'imageHTS' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ERROR Running examples in 'imageHTS-Ex.R' failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: segmentYeastBF > ### Title: Segmentation of yeast cells and ring-shaped objects. > ### Aliases: segmentYeastBF segmentRing > > ### ** Examples > > filename = system.file('yeast.jpeg', package='imageHTS') > a = readImage(filename) > if (interactive()) display(a) > p = list(edge.threshold=0.05, max.membrane.thickness=5, crown.thickness=8, + crown.steps=c(31, 61, 4), locmin.threshold.width=9, locmin.threshold.offset=0.15, + locmin.erode.size=3, cell.max.overlap=2, nucleus.radius.offset=10, + cell.radius.offset=4) > seg = segmentRing(a, p) Error in if (nrow(cs) > 0) { : argument is of length zero Calls: segmentRing -> extractCells Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 ERROR, 1 NOTE See 'C:/Users/biocbuild/bbs-3.14-bioc/meat/imageHTS.Rcheck/00check.log' for details.