############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/igvR_1.14.0.tar.gz && rm -rf igvR.buildbin-libdir && mkdir igvR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=igvR.buildbin-libdir igvR_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL igvR_1.14.0.zip && rm igvR_1.14.0.tar.gz igvR_1.14.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 4 10.4M 4 457k 0 0 810k 0 0:00:13 --:--:-- 0:00:13 810k 13 10.4M 13 1452k 0 0 940k 0 0:00:11 0:00:01 0:00:10 940k 29 10.4M 29 3140k 0 0 1233k 0 0:00:08 0:00:02 0:00:06 1233k 54 10.4M 54 5763k 0 0 1625k 0 0:00:06 0:00:03 0:00:03 1625k 87 10.4M 87 9312k 0 0 2048k 0 0:00:05 0:00:04 0:00:01 2048k 100 10.4M 100 10.4M 0 0 2198k 0 0:00:04 0:00:04 --:--:-- 2381k install for i386 * installing *source* package 'igvR' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading See system.file("LICENSE", package="MotifDb") for use restrictions. ** help *** installing help indices converting help for package 'igvR' finding HTML links ... done BedpeInteractionsTrack-class html DataFrameAnnotationTrack-class html DataFrameQuantitativeTrack-class html GRangesAnnotationTrack-class html GRangesQuantitativeTrack-class html GenomicAlignmentTrack-class html QuantitativeTrack-class html RemoteAlignmentTrack-class html Track-class html UCSCBedAnnotationTrack-class html UCSCBedGraphQuantitativeTrack-class html VariantTrack-class html displayTrack html enableMotifLogoPopups html getGenomicRegion html getSupportedGenomes html getTrackNames html igvAnnotationTrack-class html igvR-class html ping html removeTracksByName html saveToSVG html setCustomGenome html setGenome html setTrackClickFunction html showGenomicRegion html showTrackLabels html trackInfo html trackSize-BedpeInteractionsTrack-method html trackSize-DataFrameAnnotationTrack-method html trackSize-DataFrameQuantitativeTrack-method html trackSize-GRangesAnnotationTrack-method html trackSize-GRangesQuantitativeTrack-method html trackSize-GenomicAlignmentTrack-method html trackSize-UCSCBedAnnotationTrack-method html trackSize-UCSCBedGraphQuantitativeTrack-method html trackSize-VariantTrack-method html trackSize html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location See system.file("LICENSE", package="MotifDb") for use restrictions. ** testing if installed package can be loaded from final location See system.file("LICENSE", package="MotifDb") for use restrictions. ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'igvR' ... ** testing if installed package can be loaded See system.file("LICENSE", package="MotifDb") for use restrictions. * MD5 sums packaged installation of 'igvR' as igvR_1.14.0.zip * DONE (igvR) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'igvR' successfully unpacked and MD5 sums checked