Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:43 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for iCNV on tokay2


To the developers/maintainers of the iCNV package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/iCNV.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 908/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
iCNV 1.14.0  (landing page)
Zilu Zhou
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/iCNV
git_branch: RELEASE_3_14
git_last_commit: 8294aeb
git_last_commit_date: 2021-10-26 12:42:52 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: iCNV
Version: 1.14.0
Command: rm -rf iCNV.buildbin-libdir && mkdir iCNV.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iCNV.buildbin-libdir iCNV_1.14.0.tar.gz
StartedAt: 2022-04-13 06:26:09 -0400 (Wed, 13 Apr 2022)
EndedAt: 2022-04-13 06:27:01 -0400 (Wed, 13 Apr 2022)
EllapsedTime: 52.4 seconds
RetCode: 0
Status:   OK  
PackageFile: iCNV_1.14.0.zip
PackageFileSize: 1.907 MiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf iCNV.buildbin-libdir && mkdir iCNV.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iCNV.buildbin-libdir iCNV_1.14.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'iCNV' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Note: break used in wrong context: no loop is visible 
** help
*** installing help indices
  converting help for package 'iCNV'
    finding HTML links ... done
    bambaf_from_vcf                         html  
    bed_generator                           html  
    chr                                     html  
    filenm                                  html  
    get_array_input                         html  
    iCNV_detection                          html  
    icnv_output_to_gb                       html  
    icnv_res0                               html  
    ngs_baf                                 html  
    ngs_baf.chr                             html  
    ngs_baf.id                              html  
    ngs_baf.nm                              html  
    ngs_baf.pos                             html  
    ngs_plr                                 html  
    ngs_plr.pos                             html  
    normObj                                 html  
    output_list                             html  
    plotHMMscore                            html  
    plot_intensity                          html  
    plotindi                                html  
    projname                                html  
    qcObj                                   html  
    sampname                                html  
    sampname_qc                             html  
    snp_baf                                 html  
    snp_baf.pos                             html  
    snp_lrr                                 html  
    snp_lrr.pos                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'iCNV' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'iCNV' as iCNV_1.14.0.zip
* DONE (iCNV)