############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/hmdbQuery_1.14.2.tar.gz && rm -rf hmdbQuery.buildbin-libdir && mkdir hmdbQuery.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=hmdbQuery.buildbin-libdir hmdbQuery_1.14.2.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL hmdbQuery_1.14.2.zip && rm hmdbQuery_1.14.2.tar.gz hmdbQuery_1.14.2.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 515k 100 515k 0 0 766k 0 --:--:-- --:--:-- --:--:-- 768k install for i386 Warning in untar2(tarfile, files, list, exdir, restore_times) : failed to copy 'hmdbQuery/vignettes/hmdbQuery.Rmd' to 'hmdbQuery/README.md' * installing *source* package 'hmdbQuery' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'hmdbQuery' finding HTML links ... done HmdbEntry-class html HmdbEntry html biospecimens-HmdbEntry-method html diseases-HmdbEntry-method html hmdb1 html hmdb_disease html hmdb_gene html hmdb_omim html hmdb_protein html store-HmdbEntry-method html tissues-HmdbEntry-method html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 Warning in untar2(tarfile, files, list, exdir, restore_times) : failed to copy 'hmdbQuery/vignettes/hmdbQuery.Rmd' to 'hmdbQuery/README.md' * installing *source* package 'hmdbQuery' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'hmdbQuery' as hmdbQuery_1.14.2.zip * DONE (hmdbQuery) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'hmdbQuery' successfully unpacked and MD5 sums checked