Back to Multiple platform build/check report for BioC 3.14
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

This page was generated on 2022-04-13 12:06:39 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for glmSparseNet on tokay2


To the developers/maintainers of the glmSparseNet package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/glmSparseNet.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 789/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
glmSparseNet 1.12.0  (landing page)
André Veríssimo
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/glmSparseNet
git_branch: RELEASE_3_14
git_last_commit: d305a80
git_last_commit_date: 2021-10-26 12:46:59 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    ERROR  skipped
tokay2Windows Server 2012 R2 Standard / x64  OK    ERROR  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: glmSparseNet
Version: 1.12.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/glmSparseNet_1.12.0.tar.gz && rm -rf glmSparseNet.buildbin-libdir && mkdir glmSparseNet.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=glmSparseNet.buildbin-libdir glmSparseNet_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL glmSparseNet_1.12.0.zip && rm glmSparseNet_1.12.0.tar.gz glmSparseNet_1.12.0.zip
StartedAt: 2022-04-12 07:24:44 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 07:26:13 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 89.4 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/glmSparseNet_1.12.0.tar.gz && rm -rf glmSparseNet.buildbin-libdir && mkdir glmSparseNet.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=glmSparseNet.buildbin-libdir glmSparseNet_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL glmSparseNet_1.12.0.zip && rm glmSparseNet_1.12.0.tar.gz glmSparseNet_1.12.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  747k  100  747k    0     0  1629k      0 --:--:-- --:--:-- --:--:-- 1632k

install for i386

* installing *source* package 'glmSparseNet' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'glmSparseNet'
    finding HTML links ... done
    biomart.load                            html  
    buildLambda                             html  
    buildStringNetwork                      html  
    calculate.combined.score                html  
    curl.workaround                         html  
    cv.glmDegree                            html  
    cv.glmHub                               html  
    cv.glmOrphan                            html  
    cv.glmSparseNet                         html  
    degreeCor                               html  
    degreeCov                               html  
    degreeSparsebn                          html  
    dot-calcPenalty                         html  
    dot-degreeGeneric                       html  
    dot-glmSparseNetPrivate                 html  
    dot-networkGenericParallel              html  
    dot-networkWorker                       html  
    downloadFileLocal                       html  
    ensemblGeneNames                        html  
    geneNames                               html  
    glmDegree                               html  
    glmHub                                  html  
    glmOrphan                               html  
    glmSparseNet                            html  
    hallmarks                               html  
    heuristicScale                          html  
    hubHeuristic                            html  
    networkCorParallel                      html  
    networkCovParallel                      html  
    networkOptions                          html  
    orphanHeuristic                         html  
    protein2EnsemblGeneNames                html  
    separate2GroupsCox                      html  
    string.network.700.cache                html  
    stringDBhomoSapiens                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'glmSparseNet' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'glmSparseNet' as glmSparseNet_1.12.0.zip
* DONE (glmSparseNet)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'glmSparseNet' successfully unpacked and MD5 sums checked