Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:38 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for ggtree on tokay2


To the developers/maintainers of the ggtree package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ggtree.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 780/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ggtree 3.2.1  (landing page)
Guangchuang Yu
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/ggtree
git_branch: RELEASE_3_14
git_last_commit: d3747e6
git_last_commit_date: 2021-11-14 21:37:22 -0400 (Sun, 14 Nov 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: ggtree
Version: 3.2.1
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ggtree_3.2.1.tar.gz && rm -rf ggtree.buildbin-libdir && mkdir ggtree.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ggtree.buildbin-libdir ggtree_3.2.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ggtree_3.2.1.zip && rm ggtree_3.2.1.tar.gz ggtree_3.2.1.zip
StartedAt: 2022-04-12 06:21:23 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 06:23:19 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 116.0 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ggtree_3.2.1.tar.gz && rm -rf ggtree.buildbin-libdir && mkdir ggtree.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ggtree.buildbin-libdir ggtree_3.2.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ggtree_3.2.1.zip && rm ggtree_3.2.1.tar.gz ggtree_3.2.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  309k  100  309k    0     0   473k      0 --:--:-- --:--:-- --:--:--  474k

install for i386

* installing *source* package 'ggtree' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ggtree'
    finding HTML links ... done
    Date2decimal                            html  
    add_TREEINFO                            html  
    add_colorbar                            html  
    applyLayoutDaylight                     html  
    as.polytomy                             html  
    attacher                                html  
    collapse                                html  
    decimal2Date                            html  
    expand                                  html  
    facet-plot                              html  
    facet_data                              html  
    facet_labeller                          html  
    facet_widths                            html  
    flip                                    html  
    geom-hilight                            html  
    geom_aline                              html  
    geom_balance                            html  
    geom_cladelab                           html  
    geom_cladelabel                         html  
    geom_cladelabel2                        html  
    geom_label2                             html  
    geom_motif                              html  
    geom_nodelab                            html  
    geom_nodelab2                           html  
    geom_nodepoint                          html  
    geom_point2                             html  
    geom_range                              html  
    geom_rootedge                           html  
    geom_rootpoint                          html  
    geom_segment2                           html  
    geom_strip                              html  
    geom_taxalink                           html  
    geom_text2                              html  
    geom_tiplab                             html  
    geom_tiplab2                            html  
    geom_tippoint                           html  
    geom_tree                               html  
    geom_tree2                              html  
    geom_treescale                          html  
    geom_zoom_clade                         html  
    get.path                                html  
    getNodeAngle.df                         html  
    getNodesBreadthFirst.df                 html  
    getSubtree                              html  
    getSubtree.df                           html  
    getSubtreeUnrooted                      html  
    getSubtreeUnrooted.df                   html  
    getTreeArcAngles                        html  
    get_clade_position                      html  
    get_heatmap_column_position             html  
    get_taxa_name                           html  
    ggdensitree                             html  
    ggexpand                                html  
    ggtree-format-painter                   html  
    ggtree-ggproto                          html  
    ggtree                                  html  
    gheatmap                                html  
    gzoom-methods                           html  
    gzoom.phylo                             html  
    identify                                html  
    inset                                   html  
    label_pad                               html  
    layoutDaylight                          html  
    layoutEqualAngle                        html  
    msaplot                                 html  
    multiplot                               html  
    nodebar                                 html  
    nodepie                                 html  
    open_tree                               html  
    range_format                            html  
    reexports                               html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/ggtree.buildbin-libdir/00LOCK-ggtree/00new/ggtree/help/collapse.html
    revts                                   html  
    rotate                                  html  
    rotateTreePoints                        html  
    rotate_tree                             html  
    scaleClade                              html  
    scale_color-methods                     html  
    scale_x_ggtree                          html  
    scale_x_range                           html  
    set_hilight_legend                      html  
    td_filter                               html  
    td_mutate                               html  
    td_unnest                               html  
    theme_dendrogram                        html  
    theme_inset                             html  
    theme_tree                              html  
    theme_tree2                             html  
    tree-layout                             html  
    viewClade                               html  
    xlim_expand                             html  
    xlim_tree                               html  
    zoomClade                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ggtree' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ggtree' as ggtree_3.2.1.zip
* DONE (ggtree)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'ggtree' successfully unpacked and MD5 sums checked