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This page was generated on 2022-04-13 12:06:38 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for gep2pep on tokay2


To the developers/maintainers of the gep2pep package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gep2pep.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 770/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gep2pep 1.14.0  (landing page)
Francesco Napolitano
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/gep2pep
git_branch: RELEASE_3_14
git_last_commit: f1a07c8
git_last_commit_date: 2021-10-26 12:40:07 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: gep2pep
Version: 1.14.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/gep2pep_1.14.0.tar.gz && rm -rf gep2pep.buildbin-libdir && mkdir gep2pep.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gep2pep.buildbin-libdir gep2pep_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL gep2pep_1.14.0.zip && rm gep2pep_1.14.0.tar.gz gep2pep_1.14.0.zip
StartedAt: 2022-04-12 05:57:48 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 05:58:51 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 63.2 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/gep2pep_1.14.0.tar.gz && rm -rf gep2pep.buildbin-libdir && mkdir gep2pep.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gep2pep.buildbin-libdir gep2pep_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL gep2pep_1.14.0.zip && rm gep2pep_1.14.0.tar.gz gep2pep_1.14.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100   98k  100   98k    0     0   313k      0 --:--:-- --:--:-- --:--:--  314k

install for i386

* installing *source* package 'gep2pep' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'gep2pep'
    finding HTML links ... done
    CategorizedCollection-class             html  
    CategorizedCollection                   html  
    CondSEA                                 html  
    PathSEA                                 html  
    addSingleGeneSets                       html  
    as.CategorizedCollection                html  
    buildPEPs                               html  
    checkRepository                         html  
    clearCache                              html  
    createMergedRepository                  html  
    createRepository                        html  
    exportSEA                               html  
    gene2pathways                           html  
    gep2pep-package                         html  
    getCollections                          html  
    getDetails                              html  
    getResults                              html  
    importFromRawMode                       html  
    importMSigDB.xml                        html  
    loadCollection                          html  
    loadESmatrix                            html  
    loadPVmatrix                            html  
    loadSampleGEP                           html  
    loadSamplePWS                           html  
    makeCollectionIDs                       html  
    openRepository                          html  
    setId2setName                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'gep2pep' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'gep2pep' as gep2pep_1.14.0.zip
* DONE (gep2pep)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'gep2pep' successfully unpacked and MD5 sums checked