############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/gep2pep_1.14.0.tar.gz && rm -rf gep2pep.buildbin-libdir && mkdir gep2pep.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=gep2pep.buildbin-libdir gep2pep_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL gep2pep_1.14.0.zip && rm gep2pep_1.14.0.tar.gz gep2pep_1.14.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 98k 100 98k 0 0 313k 0 --:--:-- --:--:-- --:--:-- 314k install for i386 * installing *source* package 'gep2pep' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'gep2pep' finding HTML links ... done CategorizedCollection-class html CategorizedCollection html CondSEA html PathSEA html addSingleGeneSets html as.CategorizedCollection html buildPEPs html checkRepository html clearCache html createMergedRepository html createRepository html exportSEA html gene2pathways html gep2pep-package html getCollections html getDetails html getResults html importFromRawMode html importMSigDB.xml html loadCollection html loadESmatrix html loadPVmatrix html loadSampleGEP html loadSamplePWS html makeCollectionIDs html openRepository html setId2setName html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'gep2pep' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'gep2pep' as gep2pep_1.14.0.zip * DONE (gep2pep) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'gep2pep' successfully unpacked and MD5 sums checked