############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/geneRxCluster_1.30.0.tar.gz && rm -rf geneRxCluster.buildbin-libdir && mkdir geneRxCluster.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=geneRxCluster.buildbin-libdir geneRxCluster_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL geneRxCluster_1.30.0.zip && rm geneRxCluster_1.30.0.tar.gz geneRxCluster_1.30.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 26588 100 26588 0 0 67316 0 --:--:-- --:--:-- --:--:-- 67482 install for i386 * installing *source* package 'geneRxCluster' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c cluster.c -o cluster.o cluster.c: In function 'cutptClean_new_elt': cluster.c:80:6: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] if (*pvj!=NOTAIL) ^ cluster.c: In function 'gRxC_cluster': cluster.c:682:2: warning: 'cutptFunRes' may be used uninitialized in this function [-Wmaybe-uninitialized] SET_VECTOR_ELT(final,2,cutptFunRes); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o geneRxCluster.dll tmp.def cluster.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/geneRxCluster.buildbin-libdir/00LOCK-geneRxCluster/00new/geneRxCluster/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'geneRxCluster' finding HTML links ... done critVal.alpha html critVal.power html critVal.target html gRxCluster-object html finding level-2 HTML links ... done gRxCluster html gRxPlot html gRxPlotClumps html gRxSummary html geneRxCluster html noprune html plot.cutpoints html prune.loglik html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'geneRxCluster' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c cluster.c -o cluster.o cluster.c: In function 'cutptClean_new_elt': cluster.c:80:6: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] if (*pvj!=NOTAIL) ^ cluster.c: In function 'gRxC_cluster': cluster.c:682:2: warning: 'cutptFunRes' may be used uninitialized in this function [-Wmaybe-uninitialized] SET_VECTOR_ELT(final,2,cutptFunRes); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o geneRxCluster.dll tmp.def cluster.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/geneRxCluster.buildbin-libdir/geneRxCluster/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'geneRxCluster' as geneRxCluster_1.30.0.zip * DONE (geneRxCluster) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'geneRxCluster' successfully unpacked and MD5 sums checked