############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL gaga ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’ * installing *source* package ‘gaga’ ... ** using staged installation ** libs gcc -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c cseqdesma.c -o cseqdesma.o gcc -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c cstat.c -o cstat.o cstat.c:22:19: warning: ‘css_c_sccs_id’ defined but not used [-Wunused-const-variable=] 22 | static const char css_c_sccs_id[] = "@(#)$Workfile: rand.c$ $Revision: 5$"; | ^~~~~~~~~~~~~ cstat.c:21:19: warning: ‘vector_c_sccs_id’ defined but not used [-Wunused-const-variable=] 21 | static const char vector_c_sccs_id[] = "%W%"; | ^~~~~~~~~~~~~~~~ cstat.c:20:19: warning: ‘nrutil_c_sccs_id’ defined but not used [-Wunused-const-variable=] 20 | static const char nrutil_c_sccs_id[] = "%W%"; | ^~~~~~~~~~~~~~~~ cstat.c:19:19: warning: ‘mess_c_sccs_id’ defined but not used [-Wunused-const-variable=] 19 | static const char mess_c_sccs_id[] = "%W%"; | ^~~~~~~~~~~~~~ cstat.c:18:19: warning: ‘interface_c_sccs_id’ defined but not used [-Wunused-const-variable=] 18 | static const char interface_c_sccs_id[] = "%W%"; | ^~~~~~~~~~~~~~~~~~~ gcc -shared -L/home/biocbuild/bbs-3.14-bioc/R/lib -L/usr/local/lib -o gaga.so cseqdesma.o cstat.o -L/home/biocbuild/bbs-3.14-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.14-bioc/R/library/00LOCK-gaga/00new/gaga/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gaga)