Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:32 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for fcScan on tokay2


To the developers/maintainers of the fcScan package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fcScan.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 632/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
fcScan 1.8.0  (landing page)
Pierre Khoueiry Abdullah El-Kurdi
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/fcScan
git_branch: RELEASE_3_14
git_last_commit: d81e849
git_last_commit_date: 2021-10-26 12:53:32 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: fcScan
Version: 1.8.0
Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:fcScan.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings fcScan_1.8.0.tar.gz
StartedAt: 2022-04-12 19:34:28 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 20:04:26 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 1798.5 seconds
RetCode: 0
Status:   OK  
CheckDir: fcScan.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:fcScan.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings fcScan_1.8.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/fcScan.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'fcScan/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'fcScan' version '1.8.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'fcScan' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
getCluster 0.31   0.06   13.67
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
getCluster 0.27   0.05   13.23
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

fcScan.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/fcScan_1.8.0.tar.gz && rm -rf fcScan.buildbin-libdir && mkdir fcScan.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=fcScan.buildbin-libdir fcScan_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL fcScan_1.8.0.zip && rm fcScan_1.8.0.tar.gz fcScan_1.8.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 97 17834   97 17341    0     0  83988      0 --:--:-- --:--:-- --:--:-- 84179
100 17834  100 17834    0     0  45065      0 --:--:-- --:--:-- --:--:-- 45035

install for i386

* installing *source* package 'fcScan' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'fcScan'
    finding HTML links ... done
    getCluster                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'fcScan' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'fcScan' as fcScan_1.8.0.zip
* DONE (fcScan)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'fcScan' successfully unpacked and MD5 sums checked

Tests output

fcScan.Rcheck/tests_i386/runTests.Rout


R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("fcScan")
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: IRanges

Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows

Loading required package: GenomeInfoDb
17  entries loaded 
Running getCluster using 1 threads
Time difference of 12.12506 secs
Sites in condition do not match sites in data
3  entries loaded 
Running getCluster using 1 threads
Time difference of 11.89071 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.78137 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.85946 secs
17  entries loaded 
Running getCluster using 1 threads
No cluster found
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.3282 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.81259 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 12.20321 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.71883 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.70321 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 12.18759 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 11.93758 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 11.34383 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 12.04696 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 11.70321 secs
10  entries loaded 
Running getCluster using 1 threads
Time difference of 12.06259 secs
10  entries loaded 
Running getCluster using 1 threads
No cluster found
10  entries loaded 
Running getCluster using 1 threads
Time difference of 10.8282 secs
16  entries loaded 
Running getCluster using 1 threads
Time difference of 12.18762 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 11.90634 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 12.12505 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 11.95322 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 12.20321 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 12.90634 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 10.62511 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 15.04698 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.53134 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 10.0782 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 10.35942 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.39071 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 10.81258 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.42196 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.75009 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 12.12512 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.98446 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.18759 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 12.45317 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.59387 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 10.65632 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 12.29697 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.70318 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 10.2657 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.45324 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 20.42202 secs


RUNIT TEST PROTOCOL -- Tue Apr 12 19:48:56 2022 
*********************************************** 
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
fcScan RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
  18.01    1.50  537.81 

fcScan.Rcheck/tests_x64/runTests.Rout


R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("fcScan")
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: IRanges

Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows

Loading required package: GenomeInfoDb
17  entries loaded 
Running getCluster using 1 threads
Time difference of 13.62507 secs
Sites in condition do not match sites in data
3  entries loaded 
Running getCluster using 1 threads
Time difference of 13.20319 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 15.15636 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 13.4845 secs
17  entries loaded 
Running getCluster using 1 threads
No cluster found
17  entries loaded 
Running getCluster using 1 threads
Time difference of 13.18763 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 13.23443 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 13.2501 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 13.46888 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 13.46881 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 14.04698 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 12.96884 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 11.96884 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 13.59385 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 12.7345 secs
10  entries loaded 
Running getCluster using 1 threads
Time difference of 13.29694 secs
10  entries loaded 
Running getCluster using 1 threads
No cluster found
10  entries loaded 
Running getCluster using 1 threads
Time difference of 12.31259 secs
16  entries loaded 
Running getCluster using 1 threads
Time difference of 13.70322 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 13.65635 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 12.42197 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 12.92197 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 12.12509 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 13.35944 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.87509 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 12.68759 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 12.31307 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 15.93765 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 32.78145 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 20.18233 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 14.1979 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 17.01588 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 49.82311 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 1.746936 mins
17  entries loaded 
Running getCluster using 1 threads
Time difference of 18.54704 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 46.2503 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 1.291456 mins
17  entries loaded 
Running getCluster using 1 threads
Time difference of 54.03194 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 13.82696 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 22.6201 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 12.297 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 14.73227 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 13.79608 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 11.65752 secs


RUNIT TEST PROTOCOL -- Tue Apr 12 20:04:07 2022 
*********************************************** 
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
fcScan RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
  19.35    0.85  908.57 

Example timings

fcScan.Rcheck/examples_i386/fcScan-Ex.timings

nameusersystemelapsed
getCluster 0.31 0.0613.67

fcScan.Rcheck/examples_x64/fcScan-Ex.timings

nameusersystemelapsed
getCluster 0.27 0.0513.23