############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/exomePeak2_1.6.1.tar.gz && rm -rf exomePeak2.buildbin-libdir && mkdir exomePeak2.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=exomePeak2.buildbin-libdir exomePeak2_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL exomePeak2_1.6.1.zip && rm exomePeak2_1.6.1.tar.gz exomePeak2_1.6.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 12 2188k 12 272k 0 0 725k 0 0:00:03 --:--:-- 0:00:03 725k 82 2188k 82 1809k 0 0 1317k 0 0:00:01 0:00:01 --:--:-- 1318k 100 2188k 100 2188k 0 0 1404k 0 0:00:01 0:00:01 --:--:-- 1404k install for i386 * installing *source* package 'exomePeak2' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'exomePeak2' finding HTML links ... done GC_content_over_grl html GCsizeFactors-methods html GLM_inference html LibraryType-methods html MeripBamFileList-class html finding level-2 HTML links ... done Parameter-methods html Results-methods html SummarizedExomePeak-class html call_peaks_with_GLM html convertTxDb html ctest html decision_deseq2 html disj_background html estimateSeqDepth-methods html exomePeak2 html exomePeak2Results-methods html exomePeakCalling-methods html exome_bins_from_txdb html exonPlot html exons_by_unique_gene html exportResults-methods html flank_on_exons html glmDM-methods html glmM-methods html mclust_bg html normalizeGC-methods html plotExonLength-methods html plotLfcGC-methods html plotReadsGC-methods html plotSizeFactors-methods html quiet html reads_five_POS html reads_five_POS_rev html reduce_peaks html remove_introns html replace_bg html scanMeripBAM html sort_sep html split_by_name html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'exomePeak2' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'exomePeak2' as exomePeak2_1.6.1.zip * DONE (exomePeak2) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'exomePeak2' successfully unpacked and MD5 sums checked