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### Running command:
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###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:decoupleR.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings decoupleR_2.0.1.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/decoupleR.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'decoupleR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'decoupleR' version '2.0.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'decoupleR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
[2022-04-12 18:21:37] [INFO]    [OmnipathR] Initialized cache: `C:\Users\biocbuild\AppData\Local\Cache\OmnipathR`.
[2022-04-12 18:21:37] [INFO]    [OmnipathR] Welcome to OmnipathR!
[2022-04-12 18:21:37] [TRACE]   [OmnipathR] Cache locked: FALSE
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... ERROR
Running examples in 'decoupleR-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: get_progeny
> ### Title: Pathway RespOnsive GENes for activity inference (PROGENy).
> ### Aliases: get_progeny
> 
> ### ** Examples
> 
> progeny <- get_progeny(organism='human', top=500)
Error in open.connection(con, "rb") : HTTP error 500.
Calls: get_progeny ... parse_and_simplify -> parseJSON -> parse_con -> open -> open.connection
Execution halted
** running examples for arch 'x64' ... ERROR
Running examples in 'decoupleR-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: get_progeny
> ### Title: Pathway RespOnsive GENes for activity inference (PROGENy).
> ### Aliases: get_progeny
> 
> ### ** Examples
> 
> progeny <- get_progeny(organism='human', top=500)
Error in open.connection(con, "rb") : HTTP error 500.
Calls: get_progeny ... parse_and_simplify -> parseJSON -> parse_con -> open -> open.connection
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 ERROR
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
   12. |                 +-base::open(con, "rb")
   13. |                 \-base::open.connection(con, "rb")
   14. +-dplyr::select(...)
   15. +-dplyr::bind_rows(.)
   16. | \-rlang::list2(...)
   17. +-purrr::map(...)
   18. +-dplyr::group_split(.)
   19. +-dplyr::group_by(., .data$pathway)
   20. +-dplyr::select(...)
   21. +-dplyr::mutate(., weight = as.double(.data$weight), p_value = as.double(.data$p_value))
   22. \-dplyr::distinct(., .data$pathway, .data$genesymbol, .keep_all = TRUE)
  
  [ FAIL 4 | WARN 0 | SKIP 0 | PASS 32 ]
  Error: Test failures
  Execution halted
** running tests for arch 'x64' ...
  Running 'testthat.R'
 ERROR
Running the tests in 'tests/testthat.R' failed.
Last 13 lines of output:
   12. |                 +-base::open(con, "rb")
   13. |                 \-base::open.connection(con, "rb")
   14. +-dplyr::select(...)
   15. +-dplyr::bind_rows(.)
   16. | \-rlang::list2(...)
   17. +-purrr::map(...)
   18. +-dplyr::group_split(.)
   19. +-dplyr::group_by(., .data$pathway)
   20. +-dplyr::select(...)
   21. +-dplyr::mutate(., weight = as.double(.data$weight), p_value = as.double(.data$p_value))
   22. \-dplyr::distinct(., .data$pathway, .data$genesymbol, .keep_all = TRUE)
  
  [ FAIL 4 | WARN 0 | SKIP 0 | PASS 32 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 4 ERRORs, 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.14-bioc/meat/decoupleR.Rcheck/00check.log'
for details.