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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/decompTumor2Sig_2.10.0.tar.gz && rm -rf decompTumor2Sig.buildbin-libdir && mkdir decompTumor2Sig.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=decompTumor2Sig.buildbin-libdir decompTumor2Sig_2.10.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL decompTumor2Sig_2.10.0.zip && rm decompTumor2Sig_2.10.0.tar.gz decompTumor2Sig_2.10.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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 38 2034k   38  786k    0     0  1746k      0  0:00:01 --:--:--  0:00:01 1744k
100 2034k  100 2034k    0     0  2480k      0 --:--:-- --:--:-- --:--:-- 2481k

install for i386

* installing *source* package 'decompTumor2Sig' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'decompTumor2Sig'
    finding HTML links ... done
    QPforSig                                html  
    addBestSignatureToSubset                html  
    adjustAlexandrovSignature               html  
    adjustShiraishiSignature                html  
    adjustSignaturesForRegionSet            html  
    buildGenomesFromMutationData            html  
    buildSortedAlexandrovSignaturePatternList
                                            html  
    compNucFreq                             html  
    composeGenomesFromExposures             html  
    computeExplainedVariance                html  
    computeFrobeniusNorm                    html  
    computeRSS                              html  
    convAlx2Shi                             html  
    convertAlexandrov2Shiraishi             html  
    convertGenomesFromVRanges               html  
    convertSeqFreqToBaseFreq                html  
    decompTumor2Sig-package                 html  
    decomposeTumorGenomes                   html  
    determineSignatureDistances             html  
    determineTypeNumBasesAndTrDir           html  
    downgradeShiraishiSignatures            html  
    evaluateDecompositionQuality            html  
    getBestDecomp4Ksignatures               html  
    getCountData                            html  
    getFeatVectList                         html  
    getGenomesFromMutFeatData               html  
    getNumFlankingBases                     html  
    getNumSignatures                        html  
    getSampleList                           html  
    getSigFeatDist                          html  
    getSigFromEstParam                      html  
    getSigType                              html  
    getSignaturesFromEstParam               html  
    haveTrDir                               html  
    is.probability.data.frame               html  
    is.probability.data.frame.list          html  
    is.probability.matrix                   html  
    is.probability.matrix.list              html  
    is.probability.object                   html  
    is.probability.vector                   html  
    is.probability.vector.list              html  
    isAlexandrovSet                         html  
    isBackGround                            html  
    isEstParamObject                        html  
    isExposureSet                           html  
    isMutFeatDataObject                     html  
    isShiraishiSet                          html  
    isSignatureSet                          html  
    mapSignatureSets                        html  
    plotAlexandrovModel                     html  
    plotDecomposedContribution              html  
    plotExplainedVariance                   html  
    plotMutationDistribution                html  
    plotShiraishiModel                      html  
    processMultipleSigSets                  html  
    readAlexandrovSignatures                html  
    readGenomesFromMPF                      html  
    readGenomesFromVCF                      html  
    readShiraishiSignatures                 html  
    roundIntegerSum                         html  
    sameSignatureFormat                     html  
    setNames4ShiraishiTable                 html  
    setNumFlankingBases                     html  
    setSigFeatDist                          html  
    setSigType                              html  
    setTrDir                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'decompTumor2Sig' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'decompTumor2Sig' as decompTumor2Sig_2.10.0.zip
* DONE (decompTumor2Sig)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'decompTumor2Sig' successfully unpacked and MD5 sums checked