############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/cydar_1.18.0.tar.gz && rm -rf cydar.buildbin-libdir && mkdir cydar.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cydar.buildbin-libdir cydar_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL cydar_1.18.0.zip && rm cydar_1.18.0.tar.gz cydar_1.18.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 63277 100 63277 0 0 397k 0 --:--:-- --:--:-- --:--:-- 401k install for i386 * installing *source* package 'cydar' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c compute_density.cpp -o compute_density.o compute_density.cpp: In function 'Rcpp::NumericVector compute_density(Rcpp::List, double)': compute_density.cpp:7:23: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'R_xlen_t' {aka 'int'} [-Wsign-compare] for (size_t i=0; i ncells) { ~~~~~~~^~~~~~~~ "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c weighted_median_int.cpp -o weighted_median_int.o weighted_median_int.cpp: In function 'SEXPREC* weighted_median_int(Rcpp::NumericMatrix, Rcpp::List, Rcpp::NumericVector, Rcpp::NumericVector)': weighted_median_int.cpp:16:25: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'int'} and 'const size_t' {aka 'const unsigned int'} [-Wsign-compare] if (sample_id.size()!=ncells) { ~~~~~~~~~~~~~~~~^~~~~~~~ weighted_median_int.cpp:42:35: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'R_xlen_t' {aka 'int'} [-Wsign-compare] for (size_t icx=0; icx ncells) { ~~~~~~~^~~~~~~~ "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c weighted_median_int.cpp -o weighted_median_int.o weighted_median_int.cpp: In function 'SEXPREC* weighted_median_int(Rcpp::NumericMatrix, Rcpp::List, Rcpp::NumericVector, Rcpp::NumericVector)': weighted_median_int.cpp:16:25: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'long long int'} and 'const size_t' {aka 'const long long unsigned int'} [-Wsign-compare] if (sample_id.size()!=ncells) { ~~~~~~~~~~~~~~~~^~~~~~~~ weighted_median_int.cpp:42:35: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare] for (size_t icx=0; icx