############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/compEpiTools_1.28.0.tar.gz && rm -rf compEpiTools.buildbin-libdir && mkdir compEpiTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=compEpiTools.buildbin-libdir compEpiTools_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL compEpiTools_1.28.0.zip && rm compEpiTools_1.28.0.tar.gz compEpiTools_1.28.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 10 2064k 10 216k 0 0 811k 0 0:00:02 --:--:-- 0:00:02 812k 100 2064k 100 2064k 0 0 1778k 0 0:00:01 0:00:01 --:--:-- 1780k install for i386 * installing *source* package 'compEpiTools' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built. No methods found in package 'BiocGenerics' for requests: 'clusterApplyLB', 'clusterEvalQ' when loading 'methylPipe' No methods found in package 'BiocGenerics' for requests: 'clusterApplyLB', 'clusterEvalQ' when loading 'compEpiTools' ** help *** installing help indices converting help for package 'compEpiTools' finding HTML links ... done GR2fasta-methods html GRanges2ucsc-methods html GRangesInPromoters-methods html GRannotate-methods html GRannotateSimple html GRbaseCoverage-methods html GRcoverage-methods html GRcoverageSummit-methods html GRenrichment-methods html GRmidpoint-methods html GRsetwidth html TSS html compEpiTools-package html countOverlapsInBins-methods html distanceFromTSS-methods html enhancers html findLncRNA html getPromoterClass-methods html finding level-2 HTML links ... done heatmapData html heatmapPlot html makeGtfFromDb html matchEnhancers html overlapOfGRanges-methods html palette2d html plotStallingIndex html simplifyGOterms html stallingIndex html topGOres html ucsc2GRanges html unionMaxScore-methods html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built. No methods found in package 'BiocGenerics' for requests: 'clusterApplyLB', 'clusterEvalQ' when loading 'methylPipe' No methods found in package 'BiocGenerics' for requests: 'clusterApplyLB', 'clusterEvalQ' when loading 'compEpiTools' ** testing if installed package can be loaded from final location groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built. No methods found in package 'BiocGenerics' for requests: 'clusterApplyLB', 'clusterEvalQ' when loading 'methylPipe' No methods found in package 'BiocGenerics' for requests: 'clusterApplyLB', 'clusterEvalQ' when loading 'compEpiTools' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'compEpiTools' ... ** testing if installed package can be loaded groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built. No methods found in package 'BiocGenerics' for requests: 'clusterApplyLB', 'clusterEvalQ' when loading 'methylPipe' No methods found in package 'BiocGenerics' for requests: 'clusterApplyLB', 'clusterEvalQ' when loading 'compEpiTools' * MD5 sums packaged installation of 'compEpiTools' as compEpiTools_1.28.0.zip * DONE (compEpiTools) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'compEpiTools' successfully unpacked and MD5 sums checked