############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/coMET_1.26.0.tar.gz && rm -rf coMET.buildbin-libdir && mkdir coMET.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=coMET.buildbin-libdir coMET_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL coMET_1.26.0.zip && rm coMET_1.26.0.tar.gz coMET_1.26.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 1 13.0M 1 223k 0 0 847k 0 0:00:15 --:--:-- 0:00:15 848k 18 13.0M 18 2442k 0 0 1933k 0 0:00:06 0:00:01 0:00:05 1934k 41 13.0M 41 5552k 0 0 2455k 0 0:00:05 0:00:02 0:00:03 2454k 58 13.0M 58 7821k 0 0 2398k 0 0:00:05 0:00:03 0:00:02 2398k 79 13.0M 79 10.3M 0 0 2481k 0 0:00:05 0:00:04 0:00:01 2481k 96 13.0M 96 12.5M 0 0 2445k 0 0:00:05 0:00:05 --:--:-- 2529k 100 13.0M 100 13.0M 0 0 2460k 0 0:00:05 0:00:05 --:--:-- 2620k install for i386 * installing *source* package 'coMET' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'coMET' finding HTML links ... done COSMIC_UCSC html ChIPTF_ENCODE html ClinVarCnv_UCSC html ClinVarMain_UCSC html CoreillCNV_UCSC html DNAse_UCSC html DNaseI_FANTOM html DNaseI_RoadMap html GAD_UCSC html GWAScatalog_UCSC html GeneReviews_UCSC html HiCdata2matrix html HistoneAll_UCSC html HistoneOne_UCSC html ISCA_UCSC html TFBS_FANTOM html bindingMotifsBiomart_ENSEMBL html check.configVar html check.configVar.cometlist html check.format.mydata html chrUCSC2ENSEMBL html chromHMM_RoadMap html chromatinHMMAll_UCSC html chromatinHMMOne_UCSC html coMET-package html comet html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/coMET.buildbin-libdir/00LOCK-coMET/00new/coMET/help/comet.html comet.list html comet.web html compute.cormatrix html cpgIslands_UCSC html cpgPvalue html create.color.bar html create.color.list html create.color.list.large html create.symbol.list html create.symbol.list.large html create.tracks.user html create.tracks.web html createList.trackUser html datasets html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/coMET.buildbin-libdir/00LOCK-coMET/00new/coMET/help/otherRegulatoryRegionsTrackAll.html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/coMET.buildbin-libdir/00LOCK-coMET/00new/coMET/help/otherRegulatoryRegionsTrackSingle.html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/coMET.buildbin-libdir/00LOCK-coMET/00new/coMET/help/regulatoryEvidenceBiomartTrackAll.html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/coMET.buildbin-libdir/00LOCK-coMET/00new/coMET/help/regulatoryEvidenceBiomartTrackMultiple.html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/coMET.buildbin-libdir/00LOCK-coMET/00new/coMET/help/regulatoryEvidenceBiomartTrackSingle.html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/coMET.buildbin-libdir/00LOCK-coMET/00new/coMET/help/regulatoryFeaturesBiomartTrackAll.html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/coMET.buildbin-libdir/00LOCK-coMET/00new/coMET/help/regulatoryFeaturesBiomartTrackMultiple.html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/coMET.buildbin-libdir/00LOCK-coMET/00new/coMET/help/regulatoryFeaturesBiomartTrackSingle.html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/coMET.buildbin-libdir/00LOCK-coMET/00new/coMET/help/regulatorySegmentsBiomartTrackAll.html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/coMET.buildbin-libdir/00LOCK-coMET/00new/coMET/help/regulatorySegmentsBiomartTrackMultiple.html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/coMET.buildbin-libdir/00LOCK-coMET/00new/coMET/help/regulatorySegmentsBiomartTrackSingle.html dgfootprints_RoadMap html draw.legend html draw.name.genes.web html draw.name.tracks.web html draw.plot.annotation html draw.plot.axis.data html draw.plot.comet html draw.plot.comet.nopval html draw.plot.comet.web html draw.plot.cormatrix.plot html draw.plot.grid.mydata html draw.plot.grid.mydata.large html draw.plot.grid.mydata.names html draw.plot.grid.setup html draw.plot.linesconnection html draw.plot.mydata.ggbio html eQTL html eQTL_GTEx html fix.values html fix.values.generic html fix.values.large html gcContent_UCSC html genesName_ENSEMBL html genes_ENSEMBL html imprintedGenes_GTEx html interestGenes_ENSEMBL html interestTranscript_ENSEMBL html knownGenes_UCSC html metQTL html miRNATargetRegionsBiomart_ENSEMBL html otherRegulatoryRegionsBiomart_ENSEMBL html printPlot.comet html printPlot.comet.nopval html printPlot.comet.web html psiQTL_GTEx html read.config html read.file.cormatrix html read.file.mydata html read.file.mydata.large html refGenes_UCSC html regulationBiomart_ENSEMBL html regulatoryEvidenceBiomart_ENSEMBL html regulatoryFeaturesBiomart_ENSEMBL html regulatorySegmentsBiomart_ENSEMBL html repeatMasker_UCSC html retrieve.data html segmentalDups_UCSC html set.image.parameters html snpBiomart_ENSEMBL html snpLocations_UCSC html structureBiomart_ENSEMBL html transcript_ENSEMBL html xenorefGenes_UCSC html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'coMET' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'coMET' as coMET_1.26.0.zip * DONE (coMET) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'coMET' successfully unpacked and MD5 sums checked