############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/cicero_1.12.1.tar.gz && rm -rf cicero.buildbin-libdir && mkdir cicero.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cicero.buildbin-libdir cicero_1.12.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL cicero_1.12.1.zip && rm cicero_1.12.1.tar.gz cicero_1.12.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 923k 100 923k 0 0 932k 0 --:--:-- --:--:-- --:--:-- 932k 100 923k 100 923k 0 0 932k 0 --:--:-- --:--:-- --:--:-- 932k install for i386 * installing *source* package 'cicero' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'cicero' finding HTML links ... done aggregate_by_cell_bin html aggregate_nearby_peaks html annotate_cds_by_site html assemble_connections html build_gene_activity_matrix html cell_data html cicero-package html cicero_data html compare_connections html df_for_coords html estimate_distance_parameter html find_overlapping_ccans html find_overlapping_coordinates html gene_annotation_sample html generate_ccans html generate_cicero_models html human.hg19.genome html make_atac_cds html make_cicero_cds html make_sparse_matrix html normalize_gene_activities html plot_accessibility_in_pseudotime html plot_connections html ranges_for_coords html run_cicero html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'cicero' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'cicero' as cicero_1.12.1.zip * DONE (cicero) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'cicero' successfully unpacked and MD5 sums checked