############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/cellbaseR_1.18.0.tar.gz && rm -rf cellbaseR.buildbin-libdir && mkdir cellbaseR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cellbaseR.buildbin-libdir cellbaseR_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL cellbaseR_1.18.0.zip && rm cellbaseR_1.18.0.tar.gz cellbaseR_1.18.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 61 734k 61 454k 0 0 609k 0 0:00:01 --:--:-- 0:00:01 609k 100 734k 100 734k 0 0 758k 0 --:--:-- --:--:-- --:--:-- 758k install for i386 * installing *source* package 'cellbaseR' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'cellbaseR' finding HTML links ... done AnnotateVcf-CellBaseR-method html CellBaseParam-class html CellBaseParam html CellBaseR-class html CellBaseR html cellbaseR-package html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/cellbaseR.buildbin-libdir/00LOCK-cellbaseR/00new/cellbaseR/help/cellbaseR.html createGeneModel html getCaddScores html getCellBase-CellBaseR-method html getCellBaseResourceHelp html getChromosomeInfo-CellBaseR-method html getClinical-CellBaseR-method html getClinicalByGene html getClinicalByRegion html getConservationByRegion html getGene-CellBaseR-method html getGeneInfo html getMeta-CellBaseR-method html getProtein-CellBaseR-method html getProteinInfo html getRegion-CellBaseR-method html getRegulatoryByRegion html getSnp-CellBaseR-method html getSnpByGene html getTf-CellBaseR-method html getTfbsByRegion html getTranscript-CellBaseR-method html getTranscriptByGene html getVariant-CellBaseR-method html getVariantAnnotation html getXref-CellBaseR-method html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'cellbaseR' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'cellbaseR' as cellbaseR_1.18.0.zip * DONE (cellbaseR) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'cellbaseR' successfully unpacked and MD5 sums checked