############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/caOmicsV_1.24.0.tar.gz && rm -rf caOmicsV.buildbin-libdir && mkdir caOmicsV.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=caOmicsV.buildbin-libdir caOmicsV_1.24.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL caOmicsV_1.24.0.zip && rm caOmicsV_1.24.0.tar.gz caOmicsV_1.24.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 173k 100 173k 0 0 761k 0 --:--:-- --:--:-- --:--:-- 765k install for i386 * installing *source* package 'caOmicsV' ... ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'caOmicsV' finding HTML links ... done CA_OMICS_ENV html CA_OMICS_NAME html CA_OMICS_NA_STRING html CNVDemoData html RNA2miRNA html RNASeq html RNASeqDemoData html bioMatrixLegend html bioNetCircosPlot html bioNetLegend html biomatrixPlotDemoData html bionetPlotDemoData html caOmicsV-package html convertToZScores html drawBioNetNodeBackground html eraseBioNetNode html getBezierCurve html getBioMatrixBasePositions html getBioMatrixDataRowTop html getBioMatrixPlotParameters html getBioNetBasePositions html getBioNetNodeLinkLine html getBioNetParameters html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/caOmicsV.buildbin-libdir/00LOCK-caOmicsV/00new/caOmicsV/help/getBioNetBasePositions.html getBioNetPlotLocations html getBioNetSamplePlotPosition html getCaOmicsVColors html getCaOmicsVPlotTypes html getDefaultNaStrings html getHeatmapColorScales html getPlotDataSet html getPlotOmicsData html getPlotSampleData html getPlotSummaryData html getRelatedPlotData html initializeBioMatrixPlot html initializeBioNetCircos html labelBioNetNodeNames html linkBioNetNodes html linkBioNetSamples html methylDemoData html miRNA html miRNADemoData html plotBioMatrix html plotBioMatrixBars html plotBioMatrixBinaryData html plotBioMatrixCategoryData html plotBioMatrixHeatmap html plotBioMatrixRowNames html plotBioMatrixSampleData html plotBioMatrixSampleNames html plotBioNetBars html plotBioNetCircos html plotBioNetHeatmap html plotBioNetLines html plotBioNetPoints html plotBioNetPolygons html plotHeatmapColorScale html resetBioNetNodePlotAreaBoundary html sampleDemoData html setBioMatrixBaseCoordinates html setBioMatrixPlotArea html setBioMatrixPlotParameters html setBioNetCircosBasePlotPositions html setBioNetNodeLayout html setBioNetPlotAreaBackground html setBioNetPlotParameters html setCaOmicsVColors html setDefaultNaStrings html showBioMatrixPlotLayout html showBioNetNodesLayout html showSupportedBioNetCircosPlotType html sortClinicalData html sortOmicsDataByColumn html sortOmicsDataByRow html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'caOmicsV' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'caOmicsV' as caOmicsV_1.24.0.zip * DONE (caOmicsV) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'caOmicsV' successfully unpacked and MD5 sums checked