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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/breakpointR_1.12.0.tar.gz && rm -rf breakpointR.buildbin-libdir && mkdir breakpointR.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=breakpointR.buildbin-libdir breakpointR_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL breakpointR_1.12.0.zip && rm breakpointR_1.12.0.tar.gz breakpointR_1.12.0.zip
###
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100  736k  100  736k    0     0   585k      0  0:00:01  0:00:01 --:--:--  585k

install for i386

* installing *source* package 'breakpointR' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'breakpointR'
    finding HTML links ... done
    BreakPoint                              html  
    finding level-2 HTML links ... done

    breakSeekr                              html  
    breakpointR-package                     html  
    breakpointr                             html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/breakpointR.buildbin-libdir/00LOCK-breakpointR/00new/breakpointR/help/breakpointr.html
    breakpointr2UCSC                        html  
    collapseBins                            html  
    confidenceInterval                      html  
    confidenceInterval.binomial             html  
    createCompositeFile                     html  
    deltaWCalculator                        html  
    deltaWCalculatorVariousWindows          html  
    exportRegions                           html  
    genotype.binom                          html  
    genotype.fisher                         html  
    genotyping                              html  
    hotspotter                              html  
    insertchr                               html  
    loadFromFiles                           html  
    plotBreakpoints                         html  
    plotBreakpointsPerChr                   html  
    plotHeatmap                             html  
    ranges2UCSC                             html  
    readBamFileAsGRanges                    html  
    readConfig                              html  
    removeDoubleSCEs                        html  
    removeReadPileupSpikes                  html  
    runBreakpointr                          html  
    summarizeBreaks                         html  
    synchronizeReadDir                      html  
    transCoord                              html  
    writeConfig                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'breakpointR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'breakpointR' as breakpointR_1.12.0.zip
* DONE (breakpointR)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'breakpointR' successfully unpacked and MD5 sums checked