############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/blima_1.28.0.tar.gz && rm -rf blima.buildbin-libdir && mkdir blima.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=blima.buildbin-libdir blima_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL blima_1.28.0.zip && rm blima_1.28.0.tar.gz blima_1.28.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 35321 100 35321 0 0 292k 0 --:--:-- --:--:-- --:--:-- 294k install for i386 * installing *source* package 'blima' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c interpolateSortedVector.cpp -o interpolateSortedVector.o C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o blima.dll tmp.def RcppExports.o interpolateSortedVector.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/blima.buildbin-libdir/00LOCK-blima/00new/blima/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'blima' finding HTML links ... done aggregateAndPreprocess html bacgroundCorrect html bacgroundCorrectSingleArray html backgroundChannelSubtract html backgroundChannelSubtractSingleArray html blima-package html channelExistsIntegrityWithLogicalVectorList html checkIntegrity html checkIntegrityLogical html checkIntegrityOfListOfBeadLevelDataObjects html checkIntegrityOfSingleBeadLevelDataObject html chipArrayStatistics html createSummarizedMatrix html doAction html doProbeTTests html doTTests html filterBg html getNextVector html initMeanDistribution html insertColumn html interpolateSortedVector html interpolateSortedVectorRcpp_ html log2TransformPositive html meanDistribution html nonParametricEstimator html nonPositiveCorrect html nonPositiveCorrectSingleArray html numberOfDistributionElements html performXieCorrection html plotBackgroundImageAfterCorrection html plotBackgroundImageBeforeCorrection html quantileNormalize html readToVector html selectedChannelTransform html selectedChannelTransformSingleArray html singleArrayNormalize html singleChannelExistsIntegrityWithLogicalVector html singleCheckIntegrityLogicalVector html singleNumberOfDistributionElements html updateMeanDistribution html varianceBeadStabilise html varianceBeadStabiliseSingleArray html vstFromLumi html writeBackgroundImages html xieBacgroundCorrect html xieBacgroundCorrectSingleArray html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'blima' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c interpolateSortedVector.cpp -o interpolateSortedVector.o C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o blima.dll tmp.def RcppExports.o interpolateSortedVector.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/blima.buildbin-libdir/blima/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'blima' as blima_1.28.0.zip * DONE (blima) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'blima' successfully unpacked and MD5 sums checked