Pierrick Roger
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/biodbChebi |
| git_branch: RELEASE_3_14 |
| git_last_commit: 35326c0 |
| git_last_commit_date: 2021-10-27 06:00:18 -0400 (Wed, 27 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:06:14 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the biodbChebi package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbChebi.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 176/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbChebi 1.0.1 (landing page) Pierrick Roger
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: biodbChebi |
| Version: 1.0.1 |
| Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:biodbChebi.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings biodbChebi_1.0.1.tar.gz |
| StartedAt: 2022-04-12 16:21:47 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 16:26:03 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 255.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: biodbChebi.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:biodbChebi.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings biodbChebi_1.0.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/biodbChebi.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'biodbChebi/DESCRIPTION' ... OK
* this is package 'biodbChebi' version '1.0.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbChebi' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ChebiConn 4.67 1.19 9.15
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
biodbChebi.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/biodbChebi_1.0.1.tar.gz && rm -rf biodbChebi.buildbin-libdir && mkdir biodbChebi.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=biodbChebi.buildbin-libdir biodbChebi_1.0.1.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL biodbChebi_1.0.1.zip && rm biodbChebi_1.0.1.tar.gz biodbChebi_1.0.1.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 41569 100 41569 0 0 262k 0 --:--:-- --:--:-- --:--:-- 263k
install for i386
* installing *source* package 'biodbChebi' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'biodbChebi'
finding HTML links ... done
ChebiConn html
ChebiEntry html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'biodbChebi' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'biodbChebi' as biodbChebi_1.0.1.zip
* DONE (biodbChebi)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'biodbChebi' successfully unpacked and MD5 sums checked
|
biodbChebi.Rcheck/tests_i386/testthat.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2022-04-12 16:23:49.575][biodb::testContext]
biodb.INFO [2022-04-12 16:23:49.575][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 16:23:49.575][biodb::testContext] Test context - Generic tests
biodb.INFO [2022-04-12 16:23:49.575][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 16:23:49.575][biodb::testContext]
biodb.INFO [2022-04-12 16:23:49.638][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-04-12 16:23:49.638][self$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-04-12 16:23:49.669][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 16:23:49.669][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-04-12 16:23:49.669][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-04-12 16:23:49.669][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:49.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:49.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:49.669][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-04-12 16:23:49.716][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-04-12 16:23:49.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:49.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:49.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:49.731][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-04-12 16:23:49.731][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-04-12 16:23:49.731][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:49.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:49.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:49.747][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-04-12 16:23:49.747][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-04-12 16:23:49.747][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-04-12 16:23:49.747][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:49.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:49.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:49.747][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-04-12 16:23:49.763][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-04-12 16:23:49.763][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-04-12 16:23:49.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:49.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:49.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:49.763][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-04-12 16:23:49.763][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-04-12 16:23:49.778][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:49.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:49.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:49.778][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-04-12 16:23:49.778][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-04-12 16:23:49.778][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-04-12 16:23:49.794][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:49.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:49.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:49.794][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-04-12 16:23:49.794][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-04-12 16:23:49.794][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:49.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:49.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:49.809][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-04-12 16:23:49.825][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-04-12 16:23:49.825][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-04-12 16:23:49.825][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:49.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:49.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:49.825][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-04-12 16:23:49.825][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-04-12 16:23:49.825][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-04-12 16:23:49.825][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-04-12 16:23:49.841][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-04-12 16:23:49.841][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-04-12 16:23:49.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:49.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:49.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:49.841][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-04-12 16:23:49.841][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-04-12 16:23:49.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:49.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:49.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:49.856][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-04-12 16:23:49.856][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-04-12 16:23:49.856][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:49.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:49.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:49.856][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-04-12 16:23:49.856][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-04-12 16:23:49.872][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:49.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:49.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:49.872][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-04-12 16:23:49.872][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-04-12 16:23:49.872][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:49.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:49.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:49.872][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-04-12 16:23:49.888][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-04-12 16:23:49.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:49.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:49.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:49.888][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-04-12 16:23:49.888][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-04-12 16:23:49.888][self$set] Set key svn.binary.path to "C:\PROGRA~1\TORTOI~1\bin\svn.exe".
biodb.DEBUG[2022-04-12 16:23:49.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:49.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:49.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:49.903][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-04-12 16:23:49.903][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-04-12 16:23:49.903][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-04-12 16:23:49.903][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:49.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:49.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:49.919][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-04-12 16:23:49.966][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:23:49.997][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-04-12 16:23:49.997][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:23:49.997][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:23:49.997][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:23:49.997][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:23:49.997][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 16:23:49.997][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 16:23:49.997][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 16:23:50.013][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:23:50.013][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:23:50.013][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-04-12 16:23:50.013][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:23:50.013][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:23:50.013][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 16:23:50.013][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 16:23:50.013][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 16:23:50.013][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 16:23:50.013][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 16:23:50.013][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 16:23:50.013][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 16:23:50.013][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:23:50.028][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:23:50.028][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:23:50.028][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:23:50.028][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:23:50.028][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:23:50.028][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:23:50.028][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:23:50.028][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:23:50.028][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 16:23:50.028][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:23:50.044][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-04-12 16:23:50.044][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:23:50.044][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 16:23:50.044][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:23:50.044][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:23:50.044][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:23:50.044][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:23:50.044][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 16:23:50.059][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 16:23:50.059][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 16:23:50.059][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:23:50.059][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:23:50.059][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-04-12 16:23:50.059][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:23:50.059][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:23:50.059][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 16:23:50.059][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 16:23:50.059][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 16:23:50.059][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 16:23:50.059][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 16:23:50.059][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 16:23:50.075][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 16:23:50.075][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:23:50.075][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:23:50.075][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:23:50.075][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:23:50.075][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:23:50.075][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:23:50.075][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:23:50.075][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:23:50.075][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:23:50.075][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 16:23:50.091][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:23:50.091][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-04-12 16:23:50.091][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:23:50.091][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-04-12 16:23:50.091][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:23:50.091][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:23:50.091][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:23:50.091][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:23:50.091][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 16:23:50.106][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 16:23:50.106][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 16:23:50.106][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:23:50.106][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:23:50.106][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-04-12 16:23:50.106][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:23:50.106][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:23:50.106][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 16:23:50.106][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:23:50.106][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 16:23:50.122][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:23:50.122][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:23:50.122][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:23:50.122][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:23:50.122][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:23:50.122][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:23:50.122][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:23:50.122][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:23:50.122][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:23:50.122][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 16:23:50.122][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:23:50.138][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-04-12 16:23:50.138][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:23:50.138][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 16:23:50.138][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:23:50.138][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:23:50.138][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:23:50.138][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:23:50.138][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 16:23:50.153][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 16:23:50.153][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 16:23:50.153][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:23:50.153][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:23:50.153][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-04-12 16:23:50.153][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:23:50.153][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:23:50.153][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 16:23:50.169][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:23:50.169][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 16:23:50.169][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:23:50.169][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:23:50.169][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:23:50.169][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:23:50.169][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:23:50.169][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:23:50.169][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:23:50.169][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:23:50.169][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:23:50.169][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 16:23:50.184][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:23:50.184][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 16:23:50.184][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.184][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:50.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.200][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:50.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.200][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:50.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.200][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:50.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:50.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:50.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.231][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:50.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.231][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:50.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.247][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:50.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.247][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:50.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.247][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:50.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:50.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:50.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.278][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:50.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.278][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:50.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.278][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:50.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.294][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:50.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.294][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-04-12 16:23:50.309][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-04-12 16:23:50.309][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-04-12 16:23:50.309][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-04-12 16:23:50.309][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-12 16:23:50.309][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-04-12 16:23:50.309][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-04-12 16:23:50.309][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-04-12 16:23:50.309][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-04-12 16:23:50.325][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-04-12 16:23:50.325][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-12 16:23:50.325][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-04-12 16:23:50.325][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-04-12 16:23:50.325][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-04-12 16:23:50.325][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-04-12 16:23:50.325][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-04-12 16:23:50.325][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-04-12 16:23:50.325][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-04-12 16:23:50.341][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-12 16:23:50.341][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-04-12 16:23:50.341][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-04-12 16:23:50.341][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-04-12 16:23:50.341][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-04-12 16:23:50.341][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-04-12 16:23:50.341][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-04-12 16:23:50.341][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-04-12 16:23:50.356][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-04-12 16:23:50.356][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-04-12 16:23:50.356][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-04-12 16:23:50.356][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-04-12 16:23:50.356][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-04-12 16:23:50.356][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-04-12 16:23:50.356][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-04-12 16:23:50.356][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-04-12 16:23:50.356][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-04-12 16:23:50.372][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-04-12 16:23:50.372][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-04-12 16:23:50.372][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-04-12 16:23:50.372][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-04-12 16:23:50.372][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-04-12 16:23:50.372][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-04-12 16:23:50.372][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-04-12 16:23:50.372][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-04-12 16:23:50.388][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-04-12 16:23:50.388][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-04-12 16:23:50.388][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-04-12 16:23:50.388][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-04-12 16:23:50.388][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-04-12 16:23:50.388][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-04-12 16:23:50.388][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-04-12 16:23:50.388][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-04-12 16:23:50.388][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-04-12 16:23:50.403][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-04-12 16:23:50.403][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-04-12 16:23:50.403][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-04-12 16:23:50.403][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-04-12 16:23:50.403][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-04-12 16:23:50.403][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-04-12 16:23:50.403][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-04-12 16:23:50.403][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-04-12 16:23:50.419][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-04-12 16:23:50.419][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-04-12 16:23:50.419][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-04-12 16:23:50.419][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-04-12 16:23:50.419][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-04-12 16:23:50.419][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-04-12 16:23:50.419][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-12 16:23:50.434][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-12 16:23:50.434][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-04-12 16:23:50.434][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-04-12 16:23:50.434][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-04-12 16:23:50.434][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-04-12 16:23:50.434][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-04-12 16:23:50.434][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-04-12 16:23:50.434][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-04-12 16:23:50.434][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-04-12 16:23:50.450][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-04-12 16:23:50.450][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-04-12 16:23:50.450][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-04-12 16:23:50.450][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-04-12 16:23:50.450][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-04-12 16:23:50.450][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-04-12 16:23:50.450][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-04-12 16:23:50.466][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-04-12 16:23:50.466][initialize] This is biodb version 1.2.2.
biodb.DEBUG[2022-04-12 16:23:50.481][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 16:23:50.481][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.481][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.481][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:50.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:23:50.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:23:50.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.497][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:50.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:23:50.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:23:50.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.497][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:50.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:23:50.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:23:50.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.513][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:50.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:23:50.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:23:50.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.513][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:50.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:23:50.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:23:50.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:50.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:23:50.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:23:50.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:50.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:23:50.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:23:50.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.544][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:50.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:23:50.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:23:50.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.544][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:50.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:23:50.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:23:50.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.559][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:50.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:23:50.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:23:50.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.559][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:50.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:23:50.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:23:50.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.575][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:50.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:23:50.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:23:50.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.575][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:50.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:23:50.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:23:50.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.591][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:50.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:23:50.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:23:50.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.591][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:50.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:23:50.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:23:50.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.606][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:50.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:23:50.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:23:50.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.606][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:23:50.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:23:50.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:23:50.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:50.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:50.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:50.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:23:50.622][biodb$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2022-04-12 16:23:50.622][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2022-04-12 16:23:50.622][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:23:50.622][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-04-12 16:23:50.638][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:23:50.638][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:23:50.638][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:23:50.638][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:23:50.638][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-04-12 16:23:50.638][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2022-04-12 16:23:50.638][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-04-12 16:23:50.638][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:23:50.638][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:23:50.638][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2022-04-12 16:23:50.638][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:23:50.638][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2022-04-12 16:23:50.638][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2022-04-12 16:23:50.638][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2022-04-12 16:23:50.638][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2022-04-12 16:23:50.638][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2022-04-12 16:23:50.638][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2022-04-12 16:23:50.638][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2022-04-12 16:23:50.638][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2022-04-12 16:23:50.638][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2022-04-12 16:23:50.638][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2022-04-12 16:23:50.638][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2022-04-12 16:23:50.638][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-04-12 16:23:50.653][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 16:23:50.653][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 16:23:50.653][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 16:23:50.653][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-04-12 16:23:50.653][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:23:50.653][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:23:50.653][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:23:50.653][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:23:50.653][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:23:50.653][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:23:50.653][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-12 16:23:50.653][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2022-04-12 16:23:50.653][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:23:50.653][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:23:50.653][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-04-12 16:23:50.653][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2022-04-12 16:23:50.653][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2022-04-12 16:23:50.669][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-12 16:23:50.669][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-12 16:23:50.669][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2022-04-12 16:23:50.669][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-12 16:23:50.669][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-12 16:23:50.684][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-12 16:23:50.700][super$initialize] Initialize connector chebi.
biodb.DEBUG[2022-04-12 16:23:50.700][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2022-04-12 16:23:50.716][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2022-04-12 16:23:50.716][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2022-04-12 16:23:50.716][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-04-12 16:23:50.716][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-04-12 16:23:50.716][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2022-04-12 16:23:50.731][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2022-04-12 16:23:50.778][biodb::testThat]
biodb.INFO [2022-04-12 16:23:50.778][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2022-04-12 16:23:50.778][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:23:50.794][biodb::testThat]
biodb.TRACE[2022-04-12 16:23:51.528][loadFileContents] Loaded 1 files from cache: [1]: "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2022-04-12 16:23:51.544][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:23:51.559][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:23:51.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:23:51.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:23:51.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:23:51.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:51.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:51.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:51.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:23:51.606][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:23:51.606][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:23:51.622][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:51.622][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:51.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:23:51.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:23:51.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:51.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:51.669][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:23:51.669][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:23:51.669][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:51.669][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:51.731][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:23:51.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:23:51.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:51.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:51.747][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:23:51.747][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:23:51.747][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:51.763][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:51.763][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:23:51.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:23:51.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:51.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:51.794][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:23:51.794][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:23:51.794][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:51.794][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:51.794][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:23:51.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:23:51.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:51.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:51.825][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:23:51.825][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:23:51.825][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:51.825][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:51.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:23:51.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:23:51.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:51.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:51.856][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:23:51.856][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:23:51.856][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:51.856][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:51.856][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:23:51.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:23:51.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:51.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:51.888][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:23:51.888][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:23:51.888][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:51.888][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:51.888][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:23:51.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:23:51.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:51.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:51.919][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:23:51.919][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:23:51.919][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:51.919][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:51.919][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:23:51.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:23:51.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:51.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:51.950][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:23:51.950][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:23:51.966][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:51.966][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:51.966][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:23:51.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:23:51.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:51.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:51.997][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:23:51.997][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:23:51.997][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:51.997][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:51.997][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:23:51.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:23:52.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.028][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:23:52.028][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:23:52.028][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.028][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.044][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:23:52.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:23:52.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:23:52.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:23:52.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:23:52.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:23:52.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:23:52.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:23:52.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:23:52.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:23:52.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:23:52.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:23:52.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:23:52.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:23:52.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:23:52.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:23:52.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:23:52.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:23:52.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:23:52.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:23:52.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:23:52.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:23:52.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:23:52.216][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2022-04-12 16:23:52.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:23:52.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:23:52.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.294][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:23:52.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:23:52.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:23:52.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:23:52.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.356][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:23:52.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:23:52.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:23:52.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:23:52.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:23:52.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:23:52.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.388][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 16:23:52.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 16:23:52.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.388][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 16:23:52.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 16:23:52.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.403][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 16:23:52.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 16:23:52.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.403][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 16:23:52.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 16:23:52.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:23:52.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:23:52.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:23:52.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:23:52.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:23:52.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:23:52.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:23:52.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:23:52.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:23:52.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:23:52.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:23:52.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:23:52.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:23:52.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:23:52.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:23:52.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:23:52.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:23:52.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:23:52.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:23:52.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:23:52.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:23:52.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:23:52.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:23:52.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:23:52.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:23:52.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:23:52.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:23:52.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:23:52.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.700][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:23:52.700][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:23:52.716][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.716][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:23:52.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:23:52.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.731][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:23:52.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:23:52.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:23:52.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:23:52.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:23:52.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:23:52.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.763][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:23:52.763][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:23:52.763][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.763][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:23:52.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:23:52.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.794][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:23:52.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:23:52.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.794][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:23:52.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:23:52.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.809][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:23:52.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:23:52.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.809][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:23:52.809][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:23:52.809][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.825][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.825][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:23:52.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:23:52.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.841][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:23:52.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:23:52.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.841][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:23:52.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:23:52.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.856][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:23:52.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:23:52.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.872][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:23:52.872][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:23:52.872][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.872][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.872][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:23:52.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:23:52.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:23:52.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:23:52.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:23:52.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:23:52.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:23:52.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:23:52.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.919][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:23:52.919][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:23:52.919][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.919][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:23:52.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:23:52.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:23:52.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:23:52.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:23:52.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:23:52.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:23:52.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:23:52.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.966][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:23:52.966][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:23:52.966][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.966][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:23:52.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:23:52.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.981][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:23:52.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:23:52.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.997][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:23:52.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:23:52.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:52.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:52.997][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:23:52.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:23:52.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.013][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:23:53.013][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:23:53.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.013][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.013][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:23:53.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:23:53.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.028][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-12 16:23:53.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:23:53.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.044][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-12 16:23:53.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:23:53.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.044][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-12 16:23:53.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:23:53.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.044][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-12 16:23:53.059][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:23:53.059][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.059][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.059][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-12 16:23:53.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:23:53.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.075][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:23:53.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:23:53.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.075][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:23:53.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:23:53.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.091][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:23:53.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:23:53.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.091][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:23:53.091][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:23:53.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.106][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.106][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:23:53.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:23:53.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.122][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:23:53.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:23:53.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.122][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:23:53.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:23:53.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.122][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:23:53.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:23:53.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.138][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:23:53.138][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:23:53.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.138][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.153][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:23:53.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:23:53.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.169][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:23:53.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:23:53.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.169][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:23:53.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:23:53.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.169][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:23:53.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:23:53.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.184][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:23:53.184][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:23:53.184][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.184][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.184][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:23:53.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:23:53.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.200][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:23:53.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:23:53.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:23:53.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:23:53.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:23:53.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:23:53.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.216][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:23:53.231][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:23:53.231][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.231][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:23:53.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:23:53.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.247][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:23:53.247][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:23:53.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.247][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.263][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:23:53.263][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:23:53.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.263][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.263][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:23:53.263][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:23:53.278][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.278][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.278][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:23:53.278][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:23:53.278][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.278][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.294][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:23:53.294][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:23:53.294][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.294][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.309][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:23:53.309][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:23:53.309][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.309][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.309][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:23:53.309][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:23:53.309][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.325][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.325][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:23:53.325][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:23:53.325][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.325][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.341][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-12 16:23:53.341][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:23:53.341][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.341][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.356][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:23:53.356][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:23:53.356][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.356][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.356][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:23:53.356][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:23:53.356][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.372][ef$get] fields variable is a list.
biodb.INFO [2022-04-12 16:23:53.372][biodb::testThat]
biodb.INFO [2022-04-12 16:23:53.372][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2022-04-12 16:23:53.372][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:23:53.372][biodb::testThat]
biodb.DEBUG[2022-04-12 16:23:53.403][private$loadEntries] Creating entries from ids [1]: "15440".
biodb.DEBUG[2022-04-12 16:23:53.403][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:23:53.419][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15440".
biodb.TRACE[2022-04-12 16:23:53.419][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:23:53.419][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml".
biodb.DEBUG[2022-04-12 16:23:53.419][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:23:53.481][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:23:53.481][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:23:53.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:23:53.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:23:53.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:23:53.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:23:53.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:23:53.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:23:53.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:23:53.497][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:23:53.497][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:23:53.497][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.513][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:23:53.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:23:53.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.544][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:23:53.544][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:23:53.544][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.544][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.544][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:23:53.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:23:53.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.559][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:23:53.575][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:23:53.575][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.575][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.575][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:23:53.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:23:53.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.591][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:23:53.591][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:23:53.591][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.591][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:23:53.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:23:53.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.622][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:23:53.622][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:23:53.622][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.622][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:23:53.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:23:53.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.638][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:23:53.638][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:23:53.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.638][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.653][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:23:53.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:23:53.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.669][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:23:53.669][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:23:53.669][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.669][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.669][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:23:53.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:23:53.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.684][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:23:53.684][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:23:53.684][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.684][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:23:53.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:23:53.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.716][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:23:53.716][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:23:53.716][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.716][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.716][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:23:53.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:23:53.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.731][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:23:53.731][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:23:53.731][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.731][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.731][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:23:53.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:23:53.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.747][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:23:53.763][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:23:53.763][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.763][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.763][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:23:53.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:23:53.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:23:53.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:23:53.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:23:53.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:23:53.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:23:53.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:23:53.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:23:53.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:23:53.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:23:53.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:23:53.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:23:53.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:23:53.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:23:53.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:23:53.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:23:53.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:23:53.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:23:53.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:23:53.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:23:53.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:23:53.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:23:53.841][self$createEntryFromContent] Accession numbers: 15440.
biodb.TRACE[2022-04-12 16:23:53.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-04-12 16:23:53.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-04-12 16:23:53.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-04-12 16:23:53.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-04-12 16:23:53.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-04-12 16:23:53.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-04-12 16:23:53.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-12 16:23:53.856][biodb::testThat]
biodb.INFO [2022-04-12 16:23:53.856][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2022-04-12 16:23:53.856][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:23:53.856][biodb::testThat]
biodb.TRACE[2022-04-12 16:23:53.872][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:23:53.872][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:23:53.872][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.872][ef$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:23:53.872][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2022-04-12 16:23:53.903][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:23:53.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:23:53.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.903][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:23:53.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:23:53.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:53.919][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:23:53.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:23:53.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:53.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:23:53.919][function(conn, opt)] With value "squalene".
biodb.DEBUG[2022-04-12 16:23:53.934][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2022-04-12 16:23:53.950][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:23:53.966][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2022-04-12 16:23:53.966][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:23:53.981][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2022-04-12 16:23:54.013][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:23:54.028][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:23:54.028][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:23:54.028][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL%20NAMES&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-12 16:23:55.450][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL%20NAMES&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-12 16:23:56.294][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:23:56.356][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content"
biodb.TRACE[2022-04-12 16:23:56.419][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.request"
biodb.DEBUG[2022-04-12 16:23:56.450][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2022-04-12 16:23:56.466][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:23:56.481][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:23:56.481][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:56.481][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:56.481][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:23:56.481][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:23:56.481][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:56.481][ef$get] fields variable is a list.
biodb.INFO [2022-04-12 16:23:56.481][biodb::testThat]
biodb.INFO [2022-04-12 16:23:56.497][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2022-04-12 16:23:56.497][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:23:56.497][biodb::testThat]
biodb.TRACE[2022-04-12 16:23:56.528][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:23:56.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:23:56.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:56.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:56.528][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:23:56.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:23:56.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:56.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:56.544][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:23:56.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:23:56.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:56.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:23:56.638][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:23:56.638][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:23:56.638][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-12 16:23:56.653][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:23:56.700][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2022-04-12 16:23:56.731][biodb::testThat]
biodb.INFO [2022-04-12 16:23:56.731][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2022-04-12 16:23:56.731][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:23:56.731][biodb::testThat]
biodb.TRACE[2022-04-12 16:23:56.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:23:56.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:23:56.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:56.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:56.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:23:56.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:23:56.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:56.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:56.841][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:23:56.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:23:56.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:56.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:56.841][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:23:56.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:23:56.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:56.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:56.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:23:56.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:23:56.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:56.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:56.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:23:56.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:23:56.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:56.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:56.872][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 16:23:56.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 16:23:56.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:56.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:56.872][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 16:23:56.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 16:23:56.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:56.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:56.888][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 16:23:56.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 16:23:56.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:56.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:56.888][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 16:23:56.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 16:23:56.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:56.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:56.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:23:56.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:23:56.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:56.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:56.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:23:56.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:23:56.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:56.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:56.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:23:56.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:23:56.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:56.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:56.981][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:23:56.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:23:56.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:56.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:56.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:23:56.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:23:56.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:56.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:56.997][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:23:56.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:23:56.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:56.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:56.997][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 16:23:56.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 16:23:57.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:57.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:57.013][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 16:23:57.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 16:23:57.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:57.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:57.013][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 16:23:57.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 16:23:57.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:57.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:23:57.028][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 16:23:57.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 16:23:57.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:23:57.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-12 16:23:57.028][biodb::testThat]
biodb.INFO [2022-04-12 16:23:57.044][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2022-04-12 16:23:57.044][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:23:57.044][biodb::testThat]
biodb.INFO [2022-04-12 16:23:57.059][biodb::testThat]
biodb.INFO [2022-04-12 16:23:57.059][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2022-04-12 16:23:57.059][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:23:57.059][biodb::testThat]
biodb.INFO [2022-04-12 16:23:57.059][biodb::testThat]
biodb.INFO [2022-04-12 16:23:57.059][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2022-04-12 16:23:57.075][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:23:57.075][biodb::testThat]
biodb.DEBUG[2022-04-12 16:23:57.075][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2022-04-12 16:23:57.950][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2022-04-12 16:23:59.216][biodb::testThat]
biodb.INFO [2022-04-12 16:23:59.216][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2022-04-12 16:23:59.216][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:23:59.216][biodb::testThat]
biodb.DEBUG[2022-04-12 16:24:00.497][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.INFO [2022-04-12 16:24:01.060][biodb::testThat]
biodb.INFO [2022-04-12 16:24:01.075][biodb::testThat] Running test function test.searchCompound (" We can search for a compound ").
biodb.INFO [2022-04-12 16:24:01.075][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:24:01.075][biodb::testThat]
biodb.TRACE[2022-04-12 16:24:01.106][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:01.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:01.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:01.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:01.106][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:01.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:01.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:01.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:01.122][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:01.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:01.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:01.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:01.200][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:24:01.200][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:24:01.216][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-12 16:24:01.216][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:24:01.216][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-04-12 16:24:01.231][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:24:01.247][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:24:01.247][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-12 16:24:01.247][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:24:01.247][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2022-04-12 16:24:01.278][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-12 16:24:01.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-12 16:24:01.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:01.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:01.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:01.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:01.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:01.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:01.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:01.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:01.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:01.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:01.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:01.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:01.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:01.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:01.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:01.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:01.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:01.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:01.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:01.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:01.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:01.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:01.388][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:24:01.419][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:24:01.419][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:24:01.435][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-12 16:24:02.106][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-12 16:24:03.044][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:24:03.075][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content"
biodb.TRACE[2022-04-12 16:24:03.341][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.request"
biodb.DEBUG[2022-04-12 16:24:03.356][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:24:03.356][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:24:03.356][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:24:03.356][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-12 16:24:03.872][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-12 16:24:04.466][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:24:04.481][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content"
biodb.TRACE[2022-04-12 16:24:05.591][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.request"
biodb.DEBUG[2022-04-12 16:24:05.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:05.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:05.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:05.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:05.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:05.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:05.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:05.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:05.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:05.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:05.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:05.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:05.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:05.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:05.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:05.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:05.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:05.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:05.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:05.685][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:24:05.685][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:24:05.685][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:24:05.685][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-12 16:24:06.200][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-12 16:24:06.747][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:24:06.763][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content"
biodb.TRACE[2022-04-12 16:24:06.810][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.request"
biodb.DEBUG[2022-04-12 16:24:07.653][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:24:07.669][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:24:07.669][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-12 16:24:07.669][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:24:07.669][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-04-12 16:24:07.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:07.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:07.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:07.731][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:07.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:07.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:07.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:07.731][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:07.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:07.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:07.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:07.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:07.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:07.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:07.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:07.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:07.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:07.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:07.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:07.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:07.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:07.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:07.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:07.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:07.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:07.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:24:07.778][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2022-04-12 16:24:07.856][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:24:07.872][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2022-04-12 16:24:07.872][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-12 16:24:07.872][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 16:24:07.872][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:24:07.872][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-12 16:24:07.872][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 16:24:07.872][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 16:24:07.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:07.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:07.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:07.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:07.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:07.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:07.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:24:07.903][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.DEBUG[2022-04-12 16:24:08.153][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:24:08.153][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:24:08.153][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.TRACE[2022-04-12 16:24:08.669][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747).
biodb.DEBUG[2022-04-12 16:24:09.216][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:24:09.231][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.content"
biodb.TRACE[2022-04-12 16:24:09.310][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.request"
biodb.TRACE[2022-04-12 16:24:09.341][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml"
biodb.DEBUG[2022-04-12 16:24:09.372][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 16:24:09.403][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:24:09.403][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:24:09.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:09.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:09.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:09.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:09.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:09.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:09.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:09.419][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:09.419][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:09.435][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:09.435][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:09.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:09.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:09.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:09.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:09.450][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:24:09.450][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:24:09.450][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:09.450][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:09.450][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:24:09.466][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:24:09.466][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:09.466][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:09.466][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:24:09.466][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:24:09.466][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:09.466][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:09.481][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:24:09.481][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:24:09.481][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:09.481][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:09.481][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:09.481][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:09.481][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:09.481][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:09.497][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:24:09.497][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:09.497][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:09.497][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:09.497][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:09.497][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:09.497][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:09.513][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:09.513][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:09.513][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:09.513][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:09.513][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:09.513][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:09.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:09.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:09.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:09.528][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:24:09.528][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:24:09.528][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:09.528][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:09.544][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:24:09.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:24:09.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:09.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:09.560][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:24:09.560][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:24:09.560][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:09.560][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:09.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:09.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:09.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:09.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:09.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:09.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:09.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:09.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:09.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:09.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:09.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:09.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:09.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:09.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:09.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:09.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:09.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:09.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:09.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:09.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:09.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:09.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:09.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:09.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:09.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:09.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:09.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:09.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:09.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:09.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:09.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:09.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:09.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:09.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:09.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:09.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:09.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:09.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:09.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:09.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:09.653][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2022-04-12 16:24:09.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:09.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:09.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:09.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:09.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:09.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:09.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:09.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:09.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:09.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:09.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:09.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:09.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:09.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:09.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:09.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:09.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:09.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:09.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:09.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:09.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:09.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:09.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:09.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:09.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:09.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:09.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:24:09.716][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2022-04-12 16:24:09.716][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:24:09.731][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2022-04-12 16:24:09.731][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-12 16:24:09.731][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 16:24:09.731][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:24:09.731][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-12 16:24:09.731][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 16:24:09.731][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 16:24:09.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:09.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:09.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:09.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:09.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:09.763][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:09.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:24:09.778][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.DEBUG[2022-04-12 16:24:09.981][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:24:09.997][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:24:09.997][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.TRACE[2022-04-12 16:24:10.528][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285).
biodb.DEBUG[2022-04-12 16:24:11.075][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:24:11.091][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.content"
biodb.TRACE[2022-04-12 16:24:11.591][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.request"
biodb.TRACE[2022-04-12 16:24:12.950][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml"
biodb.DEBUG[2022-04-12 16:24:12.966][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 16:24:12.997][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:24:12.997][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:24:13.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:13.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:13.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:13.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:13.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:13.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:13.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:13.044][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:13.060][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:13.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:13.060][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:13.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:13.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:13.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:13.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:13.075][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:24:13.075][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:24:13.075][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:13.075][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:13.075][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:24:13.091][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:24:13.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:13.091][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:13.091][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:24:13.091][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:24:13.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:13.091][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:13.106][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:24:13.106][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:24:13.106][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:13.106][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:13.106][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:13.106][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:13.106][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:13.106][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:13.122][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:24:13.122][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:13.122][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:13.122][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:13.122][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:13.122][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:13.122][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:13.138][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:13.138][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:13.138][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:13.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:13.138][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:13.138][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:13.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:13.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:13.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:13.153][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:24:13.153][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:24:13.153][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:13.153][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:13.169][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:24:13.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:24:13.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:13.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:13.185][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:24:13.185][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:24:13.185][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:13.185][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:13.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:13.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:13.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:13.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:13.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:13.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:13.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:13.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:13.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:13.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:13.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:13.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:13.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:13.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:13.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:13.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:13.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:13.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:13.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:13.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:13.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:13.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:13.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:13.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:13.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:13.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:13.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:13.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:13.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:13.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:13.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:13.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:13.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:13.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:13.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:13.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:13.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:13.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:13.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:13.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:13.263][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2022-04-12 16:24:13.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:13.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:13.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:13.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:13.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:13.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:13.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:13.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:13.278][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:13.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:13.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:13.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:13.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:13.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:13.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:13.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:13.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:13.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:13.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:13.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:13.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:13.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:13.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:13.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:13.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:13.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:13.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:24:13.310][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2022-04-12 16:24:13.310][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:24:13.310][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2022-04-12 16:24:13.325][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-12 16:24:13.325][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 16:24:13.325][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:24:13.325][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-12 16:24:13.325][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 16:24:13.325][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 16:24:13.325][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:13.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:13.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:13.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:13.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:13.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:13.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:24:13.341][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.DEBUG[2022-04-12 16:24:13.341][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:24:13.341][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:24:13.356][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.TRACE[2022-04-12 16:24:13.872][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174).
biodb.DEBUG[2022-04-12 16:24:14.419][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:24:14.435][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.content"
biodb.TRACE[2022-04-12 16:24:19.060][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.request"
biodb.TRACE[2022-04-12 16:24:19.107][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml"
biodb.DEBUG[2022-04-12 16:24:19.278][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 16:24:19.310][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:24:19.310][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:24:19.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:19.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:19.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:19.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:19.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:19.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:19.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:19.341][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:19.341][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:19.341][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:19.341][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:19.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:19.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:19.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:19.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:19.357][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:24:19.357][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:24:19.372][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:19.372][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:19.372][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:24:19.372][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:24:19.372][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:19.372][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:19.372][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:24:19.388][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:24:19.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:19.388][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:19.388][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:24:19.388][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:24:19.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:19.403][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:19.403][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:19.403][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:19.403][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:19.403][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:19.403][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:24:19.403][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:19.419][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:19.419][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:19.419][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:19.419][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:19.419][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:19.419][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:19.419][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:19.435][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:19.435][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:19.435][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:19.435][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:19.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:19.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:19.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:19.450][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:24:19.450][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:24:19.450][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:19.450][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:19.466][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:24:19.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:24:19.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:19.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:19.482][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:24:19.482][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:24:19.482][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:19.482][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:19.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:19.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:19.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:19.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:19.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:19.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:19.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:19.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:19.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:19.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:19.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:19.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:19.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:19.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:19.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:19.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:19.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:19.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:19.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:19.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:19.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:19.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:19.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:19.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:19.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:19.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:19.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:19.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:19.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:19.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:19.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:19.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:19.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:19.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:19.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:19.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:19.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:19.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:19.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:19.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:19.575][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2022-04-12 16:24:19.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:19.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:19.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:19.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:19.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:19.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:19.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:19.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:19.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:19.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:19.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:19.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:19.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:19.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:19.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:19.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:19.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:19.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:19.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:19.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:19.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:19.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:19.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:19.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:19.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:19.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:19.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:24:19.622][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2022-04-12 16:24:19.622][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:24:19.622][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2022-04-12 16:24:19.622][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-12 16:24:19.622][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 16:24:19.622][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:24:19.638][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-12 16:24:19.638][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 16:24:19.638][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 16:24:19.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:19.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:19.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:19.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:19.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:19.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:19.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:24:19.653][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.DEBUG[2022-04-12 16:24:19.653][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:24:19.653][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:24:19.653][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.TRACE[2022-04-12 16:24:20.169][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441).
biodb.DEBUG[2022-04-12 16:24:20.732][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:24:20.747][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.content"
biodb.TRACE[2022-04-12 16:24:22.185][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.request"
biodb.TRACE[2022-04-12 16:24:22.216][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml"
biodb.DEBUG[2022-04-12 16:24:22.232][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 16:24:22.263][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:24:22.263][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:24:22.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:22.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:22.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:22.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:22.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:22.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:22.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:22.294][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:22.294][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:22.294][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.294][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:22.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:22.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:22.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:22.310][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:24:22.310][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:24:22.325][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.325][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:22.325][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:24:22.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:24:22.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:22.341][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:24:22.341][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:24:22.341][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.341][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:22.341][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:24:22.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:24:22.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:22.357][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:24:22.372][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:24:22.372][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.372][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:22.372][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:24:22.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:24:22.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:22.388][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:24:22.403][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:24:22.403][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.403][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:22.403][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:24:22.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:24:22.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:22.419][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:22.419][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:22.419][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.419][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:22.419][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:22.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:22.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:22.435][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:24:22.450][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:22.450][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.450][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:22.450][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:24:22.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:22.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:22.466][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:22.466][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:22.466][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.466][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:22.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:22.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:22.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:22.482][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:22.482][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:22.497][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.497][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:22.497][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:22.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:22.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:22.513][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:24:22.513][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:24:22.513][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.513][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:22.513][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:24:22.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:24:22.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:22.528][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:24:22.528][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:24:22.528][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.544][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:22.544][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:24:22.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:24:22.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:22.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:22.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:22.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:22.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:22.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:22.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:22.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:22.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:22.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:22.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:22.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:22.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:22.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:22.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:22.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:22.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:22.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:22.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:22.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:22.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:22.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:22.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:22.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:22.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:22.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:22.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:22.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:22.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:22.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:22.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:22.638][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2022-04-12 16:24:22.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:22.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:22.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:22.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:22.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:22.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:22.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:22.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:22.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:22.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:22.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:22.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:22.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:22.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:22.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:22.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:22.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:24:22.669][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2022-04-12 16:24:22.669][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:24:22.669][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2022-04-12 16:24:22.685][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-12 16:24:22.685][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 16:24:22.685][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:24:22.685][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-12 16:24:22.685][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 16:24:22.685][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 16:24:22.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:22.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:22.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:22.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:22.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:22.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:22.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:24:22.700][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.DEBUG[2022-04-12 16:24:22.700][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:24:22.700][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:24:22.716][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.TRACE[2022-04-12 16:24:23.232][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442).
biodb.DEBUG[2022-04-12 16:24:23.794][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:24:23.810][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.content"
biodb.TRACE[2022-04-12 16:24:24.763][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.request"
biodb.TRACE[2022-04-12 16:24:27.872][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml"
biodb.DEBUG[2022-04-12 16:24:27.888][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 16:24:27.919][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:24:27.919][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:24:27.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:27.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:27.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:27.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:27.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:27.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:27.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:27.950][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:27.950][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:27.950][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:27.950][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:27.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:27.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:27.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:27.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:27.982][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:24:27.982][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:24:27.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:27.982][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:27.982][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:24:27.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:24:27.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:27.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:27.997][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:24:28.013][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:24:28.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:28.013][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:28.013][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:24:28.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:24:28.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:28.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:28.028][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:24:28.028][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:24:28.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:28.044][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:28.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:24:28.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:24:28.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:28.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:28.060][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:24:28.060][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:24:28.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:28.060][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:28.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:24:28.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:24:28.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:28.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:28.091][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:28.091][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:28.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:28.091][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:28.091][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:28.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:28.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:28.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:28.122][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:24:28.122][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:28.122][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:28.122][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:28.122][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:24:28.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:28.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:28.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:28.138][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:28.138][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:28.153][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:28.153][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:28.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:28.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:28.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:28.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:28.169][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:28.169][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:28.169][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:28.169][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:28.185][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:28.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:28.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:28.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:28.200][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:24:28.200][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:24:28.200][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:28.200][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:28.200][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:24:28.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:24:28.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:28.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:28.216][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:24:28.216][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:24:28.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:28.232][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:28.232][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:24:28.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:24:28.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:28.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:28.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:28.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:28.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:28.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:28.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:28.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:28.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:28.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:28.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:28.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:28.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:28.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:28.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:28.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:28.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:28.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:28.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:28.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:28.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:28.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:28.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:28.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:28.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:28.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:28.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:28.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:28.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:28.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:28.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:28.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:28.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:28.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:28.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:28.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:28.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:28.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:28.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:28.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:28.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:28.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:28.341][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2022-04-12 16:24:28.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:28.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:28.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:28.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:28.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:28.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:28.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:28.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:28.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:28.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:28.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:28.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:28.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:28.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:28.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:28.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:28.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:28.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:28.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:24:28.372][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2022-04-12 16:24:28.372][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:24:28.388][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2022-04-12 16:24:28.388][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-12 16:24:28.388][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 16:24:28.388][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:24:28.388][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-12 16:24:28.403][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 16:24:28.403][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 16:24:28.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:28.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:28.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:28.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:28.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:28.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:28.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:24:28.419][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.DEBUG[2022-04-12 16:24:28.419][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:24:28.419][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:24:28.419][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.TRACE[2022-04-12 16:24:29.107][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310).
biodb.DEBUG[2022-04-12 16:24:29.653][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:24:29.669][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.content"
biodb.TRACE[2022-04-12 16:24:31.060][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.request"
biodb.TRACE[2022-04-12 16:24:31.091][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml"
biodb.DEBUG[2022-04-12 16:24:31.107][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 16:24:31.153][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:24:31.153][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:24:31.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:31.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:31.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:31.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:31.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:31.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:31.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:31.169][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:31.185][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:31.185][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:31.185][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:31.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:31.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:31.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:31.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:31.200][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:24:31.200][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:24:31.200][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:31.200][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:31.216][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:24:31.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:24:31.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:31.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:31.216][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:24:31.232][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:24:31.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:31.232][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:31.232][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:24:31.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:24:31.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:31.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:31.247][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:24:31.247][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:24:31.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:31.247][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:31.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:24:31.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:24:31.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:31.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:31.279][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:24:31.279][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:24:31.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:31.279][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:31.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:24:31.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:24:31.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:31.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:31.294][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:31.294][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:31.294][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:31.294][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:31.310][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:24:31.310][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:31.310][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:31.310][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:31.310][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:24:31.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:31.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:31.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:31.325][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:31.325][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:31.325][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:31.325][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:31.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:31.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:31.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:31.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:31.357][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:31.357][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:31.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:31.357][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:31.357][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:31.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:31.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:31.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:31.372][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:24:31.372][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:24:31.372][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:31.372][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:31.388][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:24:31.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:24:31.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:31.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:31.388][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:24:31.388][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:24:31.404][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:31.404][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:31.404][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:24:31.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:24:31.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:31.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:31.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:31.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:31.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:31.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:31.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:31.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:31.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:31.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:31.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:31.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:31.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:31.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:31.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:31.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:31.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:31.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:31.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:31.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:31.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:31.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:31.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:31.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:31.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:31.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:31.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:31.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:31.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:31.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:31.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:31.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:31.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:31.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:31.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:31.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:31.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:31.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:31.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:31.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:31.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:31.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:31.482][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2022-04-12 16:24:31.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:31.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:31.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:31.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:31.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:31.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:31.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:31.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:31.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:31.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:31.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:31.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:31.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:31.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:31.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:31.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:31.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:31.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:31.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:24:31.513][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2022-04-12 16:24:31.528][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:24:31.528][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2022-04-12 16:24:31.528][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-12 16:24:31.528][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 16:24:31.528][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:24:31.528][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-12 16:24:31.528][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 16:24:31.528][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 16:24:31.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:31.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:31.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:31.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:31.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:31.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:31.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:24:31.544][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.DEBUG[2022-04-12 16:24:31.560][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:24:31.560][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:24:31.560][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.TRACE[2022-04-12 16:24:32.060][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216).
biodb.DEBUG[2022-04-12 16:24:32.622][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:24:32.638][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.content"
biodb.TRACE[2022-04-12 16:24:32.669][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.request"
biodb.TRACE[2022-04-12 16:24:32.700][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml"
biodb.DEBUG[2022-04-12 16:24:32.700][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 16:24:32.747][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:24:32.747][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:24:32.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:32.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:32.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:32.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:32.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:32.763][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:32.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:32.763][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:32.763][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:32.763][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:32.779][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:32.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:32.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:32.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:32.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:32.794][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:24:32.794][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:24:32.810][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:32.810][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:32.810][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:24:32.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:24:32.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:32.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:32.825][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:24:32.825][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:24:32.825][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:32.825][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:32.825][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:24:32.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:24:32.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:32.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:32.841][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:24:32.841][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:24:32.857][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:32.857][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:32.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:24:32.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:24:32.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:32.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:32.872][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:24:32.872][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:24:32.872][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:32.872][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:32.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:24:32.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:24:32.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:32.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:32.888][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:32.888][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:32.888][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:32.904][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:32.904][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:24:32.904][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:32.904][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:32.904][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:32.904][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:24:32.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:32.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:32.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:32.919][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:32.919][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:32.919][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:32.919][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:32.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:32.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:32.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:32.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:32.935][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:32.950][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:32.950][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:32.950][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:32.950][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:32.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:32.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:32.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:32.966][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:24:32.966][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:24:32.966][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:32.966][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:32.966][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:24:32.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:24:32.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:32.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:32.982][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:24:32.982][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:24:32.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:32.997][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:32.997][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:24:32.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:24:32.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:32.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:33.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:33.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:33.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:33.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:33.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:33.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:33.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:33.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:33.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:33.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:33.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:33.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:33.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:33.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:33.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:33.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:33.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:33.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:33.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:33.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:33.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:33.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:33.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:33.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:33.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:33.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:33.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:33.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:33.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:33.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:33.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:33.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:33.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:33.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:33.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:33.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:33.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:33.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:33.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:33.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:33.091][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2022-04-12 16:24:33.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:33.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:33.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:33.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:33.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:33.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:33.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:33.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:33.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:33.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:33.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:33.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:33.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:33.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:33.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:33.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:33.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:33.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:33.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:24:33.122][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2022-04-12 16:24:33.122][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:24:33.122][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2022-04-12 16:24:33.122][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-12 16:24:33.122][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 16:24:33.138][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:24:33.138][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-12 16:24:33.138][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 16:24:33.138][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 16:24:33.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:33.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:33.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:33.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:33.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:33.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:33.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:24:33.154][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.DEBUG[2022-04-12 16:24:33.154][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:24:33.154][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:24:33.154][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.TRACE[2022-04-12 16:24:33.779][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860).
biodb.DEBUG[2022-04-12 16:24:34.357][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:24:34.372][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.content"
biodb.TRACE[2022-04-12 16:24:34.419][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.request"
biodb.TRACE[2022-04-12 16:24:34.450][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml"
biodb.DEBUG[2022-04-12 16:24:34.450][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 16:24:34.497][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:24:34.497][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:24:34.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:34.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:34.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:34.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:34.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:34.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:34.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:34.513][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:34.513][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:34.529][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:34.529][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:34.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:34.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:34.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:34.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:34.544][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:24:34.544][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:24:34.544][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:34.544][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:34.560][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:24:34.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:24:34.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:34.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:34.575][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:24:34.575][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:24:34.575][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:34.575][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:34.575][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:24:34.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:24:34.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:34.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:34.591][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:24:34.591][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:24:34.591][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:34.591][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:34.607][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:24:34.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:24:34.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:34.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:34.622][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:24:34.622][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:24:34.622][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:34.622][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:34.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:24:34.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:24:34.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:34.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:34.638][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:34.638][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:34.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:34.654][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:34.654][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:24:34.654][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:34.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:34.654][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:34.654][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:24:34.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:34.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:34.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:34.669][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:34.669][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:34.669][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:34.669][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:34.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:34.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:34.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:34.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:34.685][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:34.685][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:34.685][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:34.700][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:34.700][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:34.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:34.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:34.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:34.716][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:24:34.716][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:24:34.716][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:34.716][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:34.716][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:24:34.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:24:34.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:34.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:34.732][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:24:34.732][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:24:34.732][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:34.732][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:34.732][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:24:34.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:24:34.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:34.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:34.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:34.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:34.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:34.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:34.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:34.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:34.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:34.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:34.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:34.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:34.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:34.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:34.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:34.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:34.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:34.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:34.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:34.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:34.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:34.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:34.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:34.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:34.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:34.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:34.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:34.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:34.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:34.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:34.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:34.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:34.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:34.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:34.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:34.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:34.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:34.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:34.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:34.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:34.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:34.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:34.825][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2022-04-12 16:24:34.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:34.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:34.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:34.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:34.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:34.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:34.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:34.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:34.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:37.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:37.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:37.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:37.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:37.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:37.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:37.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:37.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:37.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:37.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:24:37.107][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2022-04-12 16:24:37.122][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:24:37.122][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2022-04-12 16:24:37.122][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-12 16:24:37.122][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 16:24:37.122][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:24:37.138][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-12 16:24:37.138][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 16:24:37.138][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 16:24:37.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:37.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:37.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:37.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:37.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:37.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:37.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:24:37.154][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.DEBUG[2022-04-12 16:24:37.169][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:24:37.169][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:24:37.169][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.TRACE[2022-04-12 16:24:37.825][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861).
biodb.DEBUG[2022-04-12 16:24:39.450][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:24:39.466][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.content"
biodb.TRACE[2022-04-12 16:24:39.497][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.request"
biodb.TRACE[2022-04-12 16:24:39.529][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml"
biodb.DEBUG[2022-04-12 16:24:39.544][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 16:24:39.591][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:24:39.591][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:24:39.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:39.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:39.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:39.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:39.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:39.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:39.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:39.607][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:39.607][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:39.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:39.607][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:39.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:39.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:39.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:39.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:39.622][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:24:39.638][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:24:39.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:39.638][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:39.638][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:24:39.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:24:39.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:39.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:39.654][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:24:39.654][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:24:39.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:39.654][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:39.654][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:24:39.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:24:39.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:39.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:39.669][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:24:39.669][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:24:39.685][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:39.685][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:39.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:24:39.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:24:39.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:39.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:39.700][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:24:39.700][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:24:39.700][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:39.700][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:39.700][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:24:39.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:24:39.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:39.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:39.716][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:39.716][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:39.716][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:39.716][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:39.732][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:24:39.732][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:39.732][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:39.732][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:39.732][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:24:39.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:39.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:39.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:39.747][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:39.747][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:39.763][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:39.763][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:39.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:39.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:39.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:39.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:39.779][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:39.779][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:39.779][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:39.779][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:39.779][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:39.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:39.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:39.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:39.794][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:24:39.794][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:24:39.794][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:39.794][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:39.794][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:24:39.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:24:39.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:39.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:39.810][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:24:39.810][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:24:39.810][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:39.825][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:39.825][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:24:39.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:24:39.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:39.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:39.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:39.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:39.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:39.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:39.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:39.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:39.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:39.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:39.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:39.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:39.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:39.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:39.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:39.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:39.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:39.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:39.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:39.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:39.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:39.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:39.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:39.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:39.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:39.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:39.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:39.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:39.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:39.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:39.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:39.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:39.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:39.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:39.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:39.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:39.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:39.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:39.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:39.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:39.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:39.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:39.904][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2022-04-12 16:24:39.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:39.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:39.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:39.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:39.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:39.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:39.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:39.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:39.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:39.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:39.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:39.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:39.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:39.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:39.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:39.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:39.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:39.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:39.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:24:39.935][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2022-04-12 16:24:39.935][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:24:39.935][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2022-04-12 16:24:39.950][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-12 16:24:39.950][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 16:24:39.950][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:24:39.950][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-12 16:24:39.950][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 16:24:39.950][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 16:24:39.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:39.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:39.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:39.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:39.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:39.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:39.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:24:39.966][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.DEBUG[2022-04-12 16:24:39.982][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:24:39.982][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:24:39.982][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.TRACE[2022-04-12 16:24:40.529][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662).
biodb.DEBUG[2022-04-12 16:24:41.091][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:24:41.107][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.content"
biodb.TRACE[2022-04-12 16:24:41.138][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.request"
biodb.TRACE[2022-04-12 16:24:41.169][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml"
biodb.DEBUG[2022-04-12 16:24:41.169][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 16:24:41.216][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:24:41.232][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:24:41.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:41.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:41.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:41.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:41.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:41.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:41.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:41.247][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:41.247][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:41.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:41.247][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:41.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:41.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:41.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:41.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:41.263][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:24:41.263][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:24:41.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:41.279][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:41.279][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:24:41.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:24:41.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:41.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:41.294][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:24:41.294][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:24:41.294][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:41.294][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:41.294][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:24:41.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:24:41.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:41.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:41.310][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:24:41.310][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:24:41.325][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:41.325][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:41.325][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:24:41.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:24:41.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:41.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:41.341][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:24:41.341][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:24:41.341][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:41.341][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:41.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:24:41.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:24:41.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:41.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:41.357][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:41.357][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:41.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:41.357][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:41.357][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:24:41.372][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:41.372][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:41.372][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:41.372][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:24:41.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:41.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:41.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:41.388][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:41.388][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:41.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:41.388][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:41.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:41.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:41.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:41.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:41.404][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:41.404][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:41.404][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:41.404][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:41.419][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:41.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:41.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:41.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:41.419][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:24:41.435][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:24:41.435][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:41.435][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:41.435][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:24:41.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:24:41.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:41.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:41.450][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:24:41.450][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:24:41.450][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:41.450][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:41.450][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:24:41.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:24:41.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:41.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:41.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:41.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:41.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:41.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:41.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:41.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:41.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:41.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:41.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:41.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:41.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:41.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:41.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:41.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:41.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:41.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:41.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:41.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:41.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:41.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:41.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:41.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:41.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:41.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:41.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:41.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:41.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:41.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:41.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:41.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:41.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:41.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:41.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:41.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:41.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:41.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:41.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:41.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:41.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:41.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:41.544][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2022-04-12 16:24:41.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:41.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:41.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:41.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:41.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:41.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:41.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:41.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:41.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:41.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:41.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:41.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:41.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:41.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:41.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:41.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:41.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:41.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:41.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:24:41.575][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2022-04-12 16:24:41.575][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:24:41.575][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2022-04-12 16:24:41.575][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-12 16:24:41.575][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 16:24:41.575][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:24:41.575][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-12 16:24:41.591][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 16:24:41.591][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 16:24:41.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:41.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:41.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:41.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:41.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:41.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:41.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:24:41.607][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.DEBUG[2022-04-12 16:24:41.607][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:24:41.607][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:24:41.607][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.TRACE[2022-04-12 16:24:42.122][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084).
biodb.DEBUG[2022-04-12 16:24:42.700][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:24:42.732][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.content"
biodb.TRACE[2022-04-12 16:24:42.763][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.request"
biodb.TRACE[2022-04-12 16:24:42.794][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml"
biodb.DEBUG[2022-04-12 16:24:42.810][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 16:24:42.841][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:24:42.841][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:24:42.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:42.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:42.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:42.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:42.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:42.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:42.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:42.872][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:42.872][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:42.872][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:42.872][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:42.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:42.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:42.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:42.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:42.888][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:24:42.888][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:24:42.888][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:42.904][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:42.904][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:24:42.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:24:42.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:42.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:42.919][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:24:42.919][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:24:42.935][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:42.935][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:42.935][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:24:42.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:24:42.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:42.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:42.950][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:24:42.950][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:24:42.950][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:42.950][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:42.950][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:24:42.966][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:24:42.966][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:42.966][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:42.966][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:42.966][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:42.966][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:42.966][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:42.982][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:24:42.982][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:42.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:42.982][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:42.982][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:24:42.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:42.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:42.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:42.997][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:42.997][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:42.997][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:42.997][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:42.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:43.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:43.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:43.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:43.013][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:43.029][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:43.029][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:43.029][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:43.029][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:43.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:43.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:43.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:43.044][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:24:43.044][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:24:43.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:43.044][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:43.044][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:24:43.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:24:43.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:43.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:43.060][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:24:43.060][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:24:43.075][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:43.075][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:43.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:43.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:43.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:43.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:43.075][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:43.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:43.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:43.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:43.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:43.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:43.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:43.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:43.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:43.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:43.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:43.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:43.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:43.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:43.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:43.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:43.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:43.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:43.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:43.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:43.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:43.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:43.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:43.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:43.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:43.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:43.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:43.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:43.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:43.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:43.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:43.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:43.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:43.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:43.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:43.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:43.154][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2022-04-12 16:24:43.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:43.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:43.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:43.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:43.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:43.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:43.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:43.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:43.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:43.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:43.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:43.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:43.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:43.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:43.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:43.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:43.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:43.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:43.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:24:43.185][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2022-04-12 16:24:43.185][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:24:43.185][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2022-04-12 16:24:43.200][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-12 16:24:43.200][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 16:24:43.200][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:24:43.200][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-12 16:24:43.200][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 16:24:43.200][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 16:24:43.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:43.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:43.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:43.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:43.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:43.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:43.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:24:43.216][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.DEBUG[2022-04-12 16:24:43.216][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:24:43.232][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:24:43.232][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.TRACE[2022-04-12 16:24:43.732][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086).
biodb.DEBUG[2022-04-12 16:24:44.294][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:24:44.310][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.content"
biodb.TRACE[2022-04-12 16:24:44.529][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.request"
biodb.TRACE[2022-04-12 16:24:44.560][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml"
biodb.DEBUG[2022-04-12 16:24:44.575][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 16:24:44.607][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:24:44.622][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:24:44.622][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:44.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:44.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:44.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:44.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:44.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:44.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:44.638][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:44.638][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:44.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:44.654][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:44.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:44.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:44.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:44.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:44.669][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:24:44.669][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:24:44.669][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:44.669][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:44.669][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:24:44.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:24:44.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:44.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:44.685][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:24:44.700][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:24:44.700][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:44.700][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:44.700][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:24:44.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:24:44.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:44.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:44.716][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:24:44.716][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:24:44.716][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:44.716][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:44.732][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:24:44.732][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:24:44.732][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:44.732][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:44.732][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:44.732][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:44.732][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:44.747][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:44.747][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:24:44.747][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:44.747][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:44.747][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:44.747][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:24:44.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:44.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:44.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:44.763][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:44.763][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:44.779][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:44.779][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:44.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:44.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:44.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:44.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:44.794][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:44.794][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:44.794][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:44.794][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:44.794][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:44.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:44.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:44.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:44.825][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:24:44.825][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:24:44.825][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:44.825][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:44.825][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:24:44.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:24:44.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:44.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:44.841][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:24:44.841][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:24:44.841][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:44.857][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:44.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:44.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:44.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:44.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:44.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:44.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:44.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:44.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:44.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:44.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:44.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:44.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:44.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:44.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:44.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:44.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:44.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:44.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:44.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:44.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:44.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:44.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:44.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:44.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:44.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:44.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:44.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:44.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:44.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:44.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:44.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:44.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:44.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:44.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:44.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:44.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:44.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:44.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:44.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:44.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:44.935][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2022-04-12 16:24:44.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:44.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:44.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:44.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:44.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:44.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:44.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:44.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:44.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:44.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:44.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:44.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:44.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:44.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:44.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:44.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:44.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:44.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:44.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:24:44.966][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2022-04-12 16:24:44.966][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:24:44.966][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2022-04-12 16:24:44.982][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-12 16:24:44.982][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 16:24:44.982][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:24:44.982][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-12 16:24:44.982][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 16:24:44.982][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 16:24:44.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:44.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:44.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:44.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:44.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:44.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:44.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:24:44.997][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.DEBUG[2022-04-12 16:24:44.997][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:24:45.013][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:24:45.013][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.TRACE[2022-04-12 16:24:45.529][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123).
biodb.DEBUG[2022-04-12 16:24:46.075][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:24:46.091][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.content"
biodb.TRACE[2022-04-12 16:24:46.122][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.request"
biodb.TRACE[2022-04-12 16:24:46.154][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml"
biodb.DEBUG[2022-04-12 16:24:46.169][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 16:24:46.200][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:24:46.200][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:24:46.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:46.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:46.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:46.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:46.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:46.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:46.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:46.216][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:46.232][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:46.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:46.232][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:46.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:46.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:46.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:46.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:46.263][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:24:46.263][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:24:46.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:46.263][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:46.263][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:24:46.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:24:46.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:46.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:46.279][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:24:46.279][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:24:46.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:46.294][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:46.294][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:24:46.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:24:46.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:46.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:46.310][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:24:46.310][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:24:46.310][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:46.310][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:46.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:24:46.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:24:46.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:46.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:46.325][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:24:46.325][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:24:46.325][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:46.341][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:46.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:24:46.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:24:46.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:46.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:46.357][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:46.357][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:46.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:46.357][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:46.357][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:24:46.357][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:46.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:46.372][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:46.372][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:24:46.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:46.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:46.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:46.388][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:46.388][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:46.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:46.388][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:46.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:46.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:46.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:46.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:46.404][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:46.404][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:46.404][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:46.404][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:46.419][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:46.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:46.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:46.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:46.419][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:24:46.435][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:24:46.435][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:46.435][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:46.435][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:24:46.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:24:46.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:46.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:46.450][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:24:46.450][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:24:46.450][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:46.450][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:46.450][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:24:46.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:24:46.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:46.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:46.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:46.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:46.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:46.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:46.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:46.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:46.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:46.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:46.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:46.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:46.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:46.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:46.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:46.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:46.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:46.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:46.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:46.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:46.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:46.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:46.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:46.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:46.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:46.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:46.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:46.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:46.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:46.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:46.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:46.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:46.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:46.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:46.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:46.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:46.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:46.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:46.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:46.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:46.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:46.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:46.544][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2022-04-12 16:24:46.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:46.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:46.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:46.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:46.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:46.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:46.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:46.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:46.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:46.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:46.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:46.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:46.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:46.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:46.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:46.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:46.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:46.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:46.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:24:46.575][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2022-04-12 16:24:46.575][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:24:46.591][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2022-04-12 16:24:46.591][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-12 16:24:46.591][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 16:24:46.591][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:24:46.591][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-12 16:24:46.591][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 16:24:46.591][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 16:24:46.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:46.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:46.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:46.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:46.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:46.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:46.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:24:46.607][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.DEBUG[2022-04-12 16:24:46.607][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:24:46.607][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:24:46.622][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.TRACE[2022-04-12 16:24:47.138][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117).
biodb.DEBUG[2022-04-12 16:24:47.700][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:24:47.825][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.content"
biodb.TRACE[2022-04-12 16:24:48.576][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.request"
biodb.TRACE[2022-04-12 16:24:49.154][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml"
biodb.DEBUG[2022-04-12 16:24:49.435][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 16:24:49.466][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:24:49.466][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:24:49.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:49.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:49.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:49.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:49.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:49.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:49.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:49.482][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:49.482][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:49.482][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:49.497][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:49.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:49.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:49.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:49.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:49.513][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:24:49.513][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:24:49.513][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:49.513][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:49.513][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:24:49.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:24:49.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:49.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:49.529][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:24:49.529][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:24:49.529][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:49.529][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:49.529][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:24:49.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:24:49.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:49.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:49.544][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:24:49.544][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:24:49.544][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:49.544][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:49.544][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:24:49.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:24:49.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:49.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:49.575][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:24:49.575][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:24:49.575][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:49.575][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:49.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:24:49.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:24:49.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:49.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:49.591][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:49.591][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:49.591][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:49.591][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:49.591][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:24:49.591][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:49.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:49.607][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:49.607][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:24:49.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:49.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:49.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:49.622][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:49.622][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:49.622][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:49.622][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:49.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:49.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:49.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:49.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:49.638][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:49.638][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:49.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:49.638][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:49.638][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:49.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:49.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:49.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:49.654][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:24:49.654][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:24:49.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:49.654][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:49.654][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:24:49.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:24:49.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:49.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:49.669][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:24:49.669][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:24:49.669][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:49.669][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:49.685][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:24:49.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:24:49.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:49.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:49.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:49.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:49.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:49.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:49.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:49.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:49.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:49.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:49.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:49.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:49.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:49.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:49.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:49.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:49.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:49.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:49.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:49.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:49.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:49.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:49.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:49.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:49.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:49.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:49.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:49.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:49.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:49.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:49.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:49.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:49.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:49.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:49.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:49.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:49.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:49.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:49.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:49.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:49.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:49.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:49.763][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2022-04-12 16:24:49.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:49.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:49.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:49.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:49.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:49.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:49.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:49.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:49.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:49.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:49.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:49.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:49.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:49.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:49.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:49.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:49.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:49.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:49.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:24:49.794][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2022-04-12 16:24:49.794][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:24:49.794][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2022-04-12 16:24:49.794][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-12 16:24:49.794][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 16:24:49.794][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:24:49.810][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-12 16:24:49.810][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 16:24:49.810][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 16:24:49.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:49.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:49.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:49.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:49.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:49.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:49.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:24:49.825][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.DEBUG[2022-04-12 16:24:49.825][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:24:49.825][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:24:49.825][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.TRACE[2022-04-12 16:24:50.326][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307).
biodb.DEBUG[2022-04-12 16:24:50.982][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:24:50.997][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.content"
biodb.TRACE[2022-04-12 16:24:51.044][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.request"
biodb.TRACE[2022-04-12 16:24:51.075][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml"
biodb.DEBUG[2022-04-12 16:24:51.107][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 16:24:51.138][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:24:51.138][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:24:51.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:51.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:51.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:51.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:51.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:51.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:51.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:51.169][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:51.169][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:51.169][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:51.169][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:51.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:51.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:51.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:51.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:51.185][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:24:51.185][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:24:51.200][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:51.200][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:51.200][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:24:51.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:24:51.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:51.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:51.216][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:24:51.216][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:24:51.216][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:51.216][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:51.216][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:24:51.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:24:51.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:51.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:51.232][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:24:51.247][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:24:51.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:51.247][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:51.247][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:24:51.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:24:51.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:51.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:51.263][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:24:51.263][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:24:51.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:51.279][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:51.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:24:51.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:24:51.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:51.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:51.294][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:51.294][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:51.294][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:51.294][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:51.294][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:24:51.294][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:51.294][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:51.294][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:51.310][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:24:51.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:51.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:51.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:51.325][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:51.325][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:51.325][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:51.325][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:51.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:51.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:51.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:51.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:51.341][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:51.341][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:51.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:51.357][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:51.357][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:51.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:51.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:51.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:51.372][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:24:51.372][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:24:51.372][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:51.372][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:51.372][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:24:51.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:24:51.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:51.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:51.388][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:24:51.388][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:24:51.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:51.388][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:51.404][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:24:51.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:24:51.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:51.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:51.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:51.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:51.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:51.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:51.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:51.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:51.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:51.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:51.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:51.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:51.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:51.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:51.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:51.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:51.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:51.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:51.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:51.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:51.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:51.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:51.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:51.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:51.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:51.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:51.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:51.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:51.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:51.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:51.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:51.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:51.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:51.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:51.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:51.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:51.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:51.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:51.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:51.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:51.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:51.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:51.482][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2022-04-12 16:24:51.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:51.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:51.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:51.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:51.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:51.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:51.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:51.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:51.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:51.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:51.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:51.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:51.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:51.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:51.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:51.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:51.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:51.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:51.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:24:51.544][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2022-04-12 16:24:51.544][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:24:51.544][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2022-04-12 16:24:51.544][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-12 16:24:51.544][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 16:24:51.560][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:24:51.560][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-12 16:24:51.560][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 16:24:51.560][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 16:24:51.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:51.575][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:51.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:51.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:51.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:51.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:51.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:24:51.591][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.DEBUG[2022-04-12 16:24:51.591][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:24:51.607][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:24:51.607][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.TRACE[2022-04-12 16:24:52.122][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803).
biodb.DEBUG[2022-04-12 16:24:52.685][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:24:52.701][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.content"
biodb.TRACE[2022-04-12 16:24:52.747][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.request"
biodb.TRACE[2022-04-12 16:24:52.935][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml"
biodb.DEBUG[2022-04-12 16:24:53.935][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 16:24:53.982][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:24:53.982][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:24:53.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:53.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:53.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:53.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:53.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:53.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:53.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:53.997][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:54.013][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:54.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:54.013][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:54.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:54.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:54.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:54.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:54.029][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:24:54.029][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:24:54.029][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:54.029][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:54.044][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:24:54.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:24:54.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:54.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:54.060][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:24:54.060][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:24:54.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:54.060][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:54.060][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:24:54.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:24:54.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:54.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:54.076][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:24:54.091][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:24:54.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:54.091][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:54.091][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:24:54.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:24:54.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:54.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:54.107][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:24:54.107][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:24:54.107][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:54.107][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:54.122][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:24:54.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:24:54.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:54.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:54.138][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:54.138][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:54.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:54.138][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:54.138][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:24:54.138][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:54.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:54.154][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:54.154][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:24:54.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:54.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:54.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:54.169][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:54.169][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:54.169][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:54.169][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:54.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:54.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:54.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:54.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:54.185][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:54.185][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:54.201][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:54.201][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:54.201][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:54.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:54.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:54.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:54.216][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:24:54.216][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:24:54.216][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:54.216][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:54.216][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:24:54.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:24:54.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:54.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:54.247][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:24:54.247][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:24:54.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:54.247][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:54.247][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:24:54.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:24:54.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:54.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:54.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:54.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:54.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:54.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:54.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:54.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:54.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:54.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:54.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:54.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:54.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:54.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:54.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:54.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:54.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:54.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:54.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:54.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:54.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:54.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:54.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:54.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:54.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:54.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:54.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:54.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:54.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:54.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:54.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:54.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:54.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:54.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:54.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:54.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:54.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:54.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:54.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:54.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:54.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:54.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:54.341][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2022-04-12 16:24:54.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:54.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:54.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:54.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:54.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:54.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:54.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:54.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:54.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:54.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:54.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:54.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:54.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:54.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:54.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:54.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:54.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:54.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:54.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:24:54.388][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2022-04-12 16:24:54.388][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:24:54.388][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2022-04-12 16:24:54.388][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-12 16:24:54.388][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 16:24:54.388][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:24:54.388][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-12 16:24:54.388][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 16:24:54.404][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 16:24:54.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:54.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:54.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:54.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:54.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:54.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:54.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:24:54.419][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.DEBUG[2022-04-12 16:24:54.419][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:24:54.419][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:24:54.419][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.TRACE[2022-04-12 16:24:54.935][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962).
biodb.DEBUG[2022-04-12 16:24:55.482][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:24:55.513][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.content"
biodb.TRACE[2022-04-12 16:24:57.529][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.request"
biodb.TRACE[2022-04-12 16:24:57.607][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml"
biodb.DEBUG[2022-04-12 16:24:57.622][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 16:24:57.654][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:24:57.654][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:24:57.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:57.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:57.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:57.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:57.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:57.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:57.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:57.685][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:57.685][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:57.685][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:57.685][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:57.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:57.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:57.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:57.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:57.716][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:24:57.716][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:24:57.716][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:57.732][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:57.732][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:24:57.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:24:57.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:57.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:57.747][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:24:57.747][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:24:57.747][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:57.747][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:57.747][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:24:57.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:24:57.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:57.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:57.763][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:24:57.779][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:24:57.779][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:57.779][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:57.779][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:24:57.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:24:57.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:57.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:57.794][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:24:57.794][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:24:57.794][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:57.794][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:57.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:24:57.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:24:57.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:57.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:57.826][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:57.826][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:24:57.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:57.826][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:57.826][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:24:57.826][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:57.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:57.826][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:57.841][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:24:57.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:57.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:57.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:57.857][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:57.857][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:57.857][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:57.857][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:57.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:57.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:57.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:57.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:57.872][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:57.872][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:57.872][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:57.872][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:57.888][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:24:57.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:24:57.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:57.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:57.888][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:24:57.904][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:24:57.904][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:57.904][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:57.904][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:24:57.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:24:57.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:57.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:57.919][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:24:57.919][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:24:57.919][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:57.919][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:57.919][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:24:57.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:24:57.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:57.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:57.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:57.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:57.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:57.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:57.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:57.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:57.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:57.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:57.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:57.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:57.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:57.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:57.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:24:57.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:24:57.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:57.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:57.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:57.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:57.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:57.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:57.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:57.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:57.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:57.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:57.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:57.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:57.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:57.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:57.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:57.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:57.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:57.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:58.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:58.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:24:58.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:24:58.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:58.013][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2022-04-12 16:24:58.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:58.076][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:24:58.091][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:24:58.091][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-12 16:24:58.091][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:24:58.091][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-04-12 16:24:58.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:58.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:58.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:58.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:58.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:58.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:58.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:58.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:58.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:58.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:58.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:58.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:58.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:58.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:58.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:58.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:58.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:58.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:58.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:58.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:58.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:58.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:58.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:58.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.341][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:58.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:58.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:58.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:58.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:58.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:58.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:58.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:58.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:58.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:58.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:58.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:58.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:58.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:58.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:58.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:58.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:58.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:58.419][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:58.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:58.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:58.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:58.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:58.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:58.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:58.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:58.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:58.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:58.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:58.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:58.451][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:58.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:58.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:58.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:58.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:58.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:58.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:58.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:58.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:58.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:58.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:58.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:58.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:58.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:58.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:58.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:58.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:58.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:58.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:58.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:58.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:58.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:58.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:58.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:58.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:58.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:58.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:58.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:58.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:58.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:58.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:58.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:58.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:58.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:58.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.576][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:58.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:58.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:58.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:58.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:58.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:58.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:58.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:58.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:58.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:58.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:58.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:58.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:58.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:58.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:58.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:58.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:58.622][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:58.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:58.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:58.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:58.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:58.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:58.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:58.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:58.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:58.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:58.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:58.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:58.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:58.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:58.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:58.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:58.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:58.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:58.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:58.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:58.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:58.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:58.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:58.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:58.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:58.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:58.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:58.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:58.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:58.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:58.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:58.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:58.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:24:58.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:24:58.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:24:58.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:24:58.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:24:58.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:24:58.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:24:58.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:24:58.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:58.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:58.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:58.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:58.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:58.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:58.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:58.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:58.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:24:58.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:58.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:24:58.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:24:58.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:24:58.857][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:24:58.857][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:24:58.857][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:24:58.857][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-12 16:24:59.357][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-12 16:24:59.919][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:24:59.935][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1eb5a44d25716d90ff717fcfe93533e3.content"
biodb.TRACE[2022-04-12 16:25:00.654][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1eb5a44d25716d90ff717fcfe93533e3.request"
biodb.DEBUG[2022-04-12 16:25:01.138][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:01.138][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:25:01.154][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:25:01.154][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-12 16:25:01.685][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-12 16:25:02.326][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:25:02.341][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ef91a3654a792571304ae6f83c5871b.content"
biodb.TRACE[2022-04-12 16:25:02.857][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ef91a3654a792571304ae6f83c5871b.request"
biodb.DEBUG[2022-04-12 16:25:03.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:03.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:03.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:03.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:03.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:03.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:03.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:03.044][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2022-04-12 16:25:03.044][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:25:03.044][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2022-04-12 16:25:03.044][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-12 16:25:03.044][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 16:25:03.044][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:25:03.060][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-12 16:25:03.060][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 16:25:03.060][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 16:25:03.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:03.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:03.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:03.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:03.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:03.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:03.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:03.076][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648".
biodb.DEBUG[2022-04-12 16:25:03.091][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:25:03.091][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:25:03.091][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648".
biodb.TRACE[2022-04-12 16:25:03.607][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4648).
biodb.DEBUG[2022-04-12 16:25:04.404][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:25:04.419][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/844829d8afb6d338ebac906e62f6cb8e.content"
biodb.TRACE[2022-04-12 16:25:04.451][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/844829d8afb6d338ebac906e62f6cb8e.request"
biodb.TRACE[2022-04-12 16:25:04.826][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml"
biodb.DEBUG[2022-04-12 16:25:04.826][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 16:25:04.872][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:25:04.872][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:25:04.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:04.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:04.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:04.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:04.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:04.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:04.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:04.888][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:04.888][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:04.904][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:04.904][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:04.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:04.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:04.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:04.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:04.919][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:04.919][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:04.919][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:04.919][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:04.935][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:04.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:04.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:04.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:04.951][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:04.951][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:04.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:04.951][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:04.951][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:04.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:04.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:04.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:04.966][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:04.966][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:04.966][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:04.982][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:04.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:04.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:04.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:04.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:04.998][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:04.998][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:04.998][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:04.998][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:04.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:04.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:05.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:05.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:05.013][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:05.029][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:05.029][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:05.029][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:05.029][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:05.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:05.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:05.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:05.044][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:05.044][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:05.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:05.044][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:05.044][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:05.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:05.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:05.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:05.060][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:05.076][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:05.076][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:05.076][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:05.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:05.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:05.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:05.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:05.091][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:05.091][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:05.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:05.091][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:05.091][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:05.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:05.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:05.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:05.107][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:05.107][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:05.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:05.123][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:05.123][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:05.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:05.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:05.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:05.138][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:05.138][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:05.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:05.138][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:05.138][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:05.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:05.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:05.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:05.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:05.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:05.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:05.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:05.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:05.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:05.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:05.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:05.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:05.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:05.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:05.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:05.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:05.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:05.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:05.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:05.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:05.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:05.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:05.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:05.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:05.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:05.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:05.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:05.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:05.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:05.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:05.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:05.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:05.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:05.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:05.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:05.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:05.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:05.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:05.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:05.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:05.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:05.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:05.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:05.232][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2022-04-12 16:25:05.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:05.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:05.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:05.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:05.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:05.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:05.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:05.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:05.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:05.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:05.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:05.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:05.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:05.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:05.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:05.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:05.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:05.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:05.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:05.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:05.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:05.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:05.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:05.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:05.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:05.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:05.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:05.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:05.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:05.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:05.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:05.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:05.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:05.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:05.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:05.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:05.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:05.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:05.310][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2022-04-12 16:25:05.310][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:25:05.310][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2022-04-12 16:25:05.310][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-12 16:25:05.310][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 16:25:05.310][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:25:05.310][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-12 16:25:05.310][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 16:25:05.310][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 16:25:05.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:05.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:05.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:05.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:05.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:05.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:05.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:05.326][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447".
biodb.DEBUG[2022-04-12 16:25:05.341][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:25:05.341][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:25:05.341][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447".
biodb.TRACE[2022-04-12 16:25:05.857][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=62447).
biodb.DEBUG[2022-04-12 16:25:06.419][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:25:06.435][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ceadc6ac0ce91f601616e22be7c76851.content"
biodb.TRACE[2022-04-12 16:25:06.529][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/ceadc6ac0ce91f601616e22be7c76851.request"
biodb.TRACE[2022-04-12 16:25:06.794][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml"
biodb.DEBUG[2022-04-12 16:25:06.810][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 16:25:06.841][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:25:06.857][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:25:06.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:06.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:06.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:06.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:06.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:06.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:06.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:06.872][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:06.872][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:06.872][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:06.872][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:06.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:06.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:06.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:06.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:06.904][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:06.904][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:06.904][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:06.904][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:06.904][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:06.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:06.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:06.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:06.919][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:06.919][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:06.935][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:06.935][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:06.935][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:06.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:06.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:06.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:06.951][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:06.951][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:06.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:06.951][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:06.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:06.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:06.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:06.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:06.982][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:06.982][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:06.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:06.982][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:06.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:06.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:06.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:06.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:06.997][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:06.997][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:07.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.013][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.013][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:07.013][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:07.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.013][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.013][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:07.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:07.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.044][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.044][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.044][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.076][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:07.076][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:07.076][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.076][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.076][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:07.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:07.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.091][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:07.091][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:07.107][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.107][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.107][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:07.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:07.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.123][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:07.123][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:07.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.123][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.123][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:07.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:07.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.138][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:07.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:07.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:07.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:07.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:07.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:07.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:07.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:07.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:07.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:07.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:07.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:07.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:07.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:07.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:07.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:07.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:07.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:07.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:07.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:07.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:07.232][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2022-04-12 16:25:07.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:07.294][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:07.294][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:07.310][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-12 16:25:07.310][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:07.310][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-04-12 16:25:07.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:07.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:07.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:07.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:07.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:07.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:07.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:07.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:07.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:07.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:07.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:07.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:07.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:07.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:07.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:07.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:07.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:07.419][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:07.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:07.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:07.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:07.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:07.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:07.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:07.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:07.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:07.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:07.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:07.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:07.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:07.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:07.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:07.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:07.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:07.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:07.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:07.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:07.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:07.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:07.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:07.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:07.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:07.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:07.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:07.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:07.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:07.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:07.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:07.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:07.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:07.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:07.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:07.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:07.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:07.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:07.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:07.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:07.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:07.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:07.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:07.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:07.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:07.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:07.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:07.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:07.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:07.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:07.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:07.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:07.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:07.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:07.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:07.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:07.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:07.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:07.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:07.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:07.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:07.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:07.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:07.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:07.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:07.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:07.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:07.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:07.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:07.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:07.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:07.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:07.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:07.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:07.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:07.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:07.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:07.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:07.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:07.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:07.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:07.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:07.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:07.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:07.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:07.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:07.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:07.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:07.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:07.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:07.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:07.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:07.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:07.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:07.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:07.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:07.794][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:07.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:07.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:07.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:07.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:07.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:07.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:07.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:07.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:07.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:07.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:07.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:07.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:07.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:07.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:07.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:07.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:07.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:07.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:07.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:07.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:07.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:07.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:07.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:07.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:07.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:07.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:07.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:07.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:07.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:07.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:07.935][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:07.935][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:07.951][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-12 16:25:07.951][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:07.951][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-04-12 16:25:07.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:07.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:07.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:07.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:07.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:07.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:07.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:07.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:07.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:07.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:07.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:07.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:07.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:07.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:08.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:08.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:08.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:08.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:08.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:08.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:08.044][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:08.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:08.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:08.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:08.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:08.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:08.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:08.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:08.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:08.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:08.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:08.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:08.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:08.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:08.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:08.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:08.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:08.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:08.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:08.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:08.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:08.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:08.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:08.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:08.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:08.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:08.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:08.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:08.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:08.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:08.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:08.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:08.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:08.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:08.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:08.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:08.169][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:08.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:08.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:08.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:08.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:08.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:08.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:08.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:08.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:08.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:08.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:08.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:08.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:08.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:08.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:08.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:08.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:08.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:08.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:08.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:08.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:08.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:08.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:08.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:08.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:08.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:08.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:08.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:08.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:08.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:08.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:08.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:08.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:08.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:08.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:08.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:08.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:08.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:08.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:08.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:08.294][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:08.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:08.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:08.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:08.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:08.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:08.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:08.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:08.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:08.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:08.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:08.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:08.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:08.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:08.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:08.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:08.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:08.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:08.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:08.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:08.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:08.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:08.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:08.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:08.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:08.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:08.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:08.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:08.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:08.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:08.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:08.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:08.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:08.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:08.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:08.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:08.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:08.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:08.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:08.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:08.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:08.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:08.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:08.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:08.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:08.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:08.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:08.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:08.451][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:08.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:08.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.482][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-12 16:25:08.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-12 16:25:08.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-12 16:25:08.497][biodb::testThat]
biodb.INFO [2022-04-12 16:25:08.497][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2022-04-12 16:25:08.497][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:08.497][biodb::testThat]
biodb.TRACE[2022-04-12 16:25:08.497][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-12 16:25:08.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-12 16:25:08.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:08.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:08.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:08.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:08.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:08.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:08.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:08.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:08.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:08.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:08.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:08.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:08.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:08.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:08.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:08.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:08.685][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:08.685][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:08.685][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-12 16:25:08.685][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:08.685][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-12 16:25:08.685][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:08.701][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:08.701][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-12 16:25:08.701][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:08.701][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-12 16:25:08.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:08.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:08.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:08.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:08.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:08.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:08.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:08.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:08.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:08.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:08.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:08.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:08.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:08.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:08.732][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:08.732][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:08.732][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-12 16:25:08.732][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:08.732][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-12 16:25:08.732][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-12 16:25:08.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:08.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:08.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:08.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:08.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:08.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:08.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:08.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:08.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:08.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:08.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:08.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.763][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:08.763][private$selectFields]
biodb.TRACE[2022-04-12 16:25:08.763][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 16:25:08.763][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 16:25:08.763][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:08.763][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:08.763][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:08.763][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.763][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.763][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:08.763][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:08.779][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.779][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.779][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:08.779][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:08.779][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:08.779][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:08.779][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.779][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.779][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-12 16:25:08.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:08.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:08.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:08.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:08.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:08.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:08.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.810][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-12 16:25:08.810][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-12 16:25:08.810][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-12 16:25:08.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:08.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:08.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:08.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:08.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:08.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:08.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:08.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:08.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:08.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:08.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:09.029][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:09.029][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:25:09.029][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:25:09.029][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-12 16:25:09.560][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-12 16:25:10.232][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:25:10.263][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content"
biodb.TRACE[2022-04-12 16:25:10.404][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.request"
biodb.DEBUG[2022-04-12 16:25:10.419][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:10.435][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:25:10.435][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:25:10.435][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
biodb.TRACE[2022-04-12 16:25:11.076][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
biodb.DEBUG[2022-04-12 16:25:11.732][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:25:11.779][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content"
biodb.TRACE[2022-04-12 16:25:11.841][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.request"
biodb.DEBUG[2022-04-12 16:25:11.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:11.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:11.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:11.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:11.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:11.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:11.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:11.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:11.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:11.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:11.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:11.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:11.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:11.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:11.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:11.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:11.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:11.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:11.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:11.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:11.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:11.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:11.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:11.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:11.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:11.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:11.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:11.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:11.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:11.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:11.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:11.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:11.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:11.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:11.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:11.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:11.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:11.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:11.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:11.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:11.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:11.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:11.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:11.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:11.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:11.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:11.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:11.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:11.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:11.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:11.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:11.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:11.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:11.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:11.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:11.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:11.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:12.013][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-12 16:25:12.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:12.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:12.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:12.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:12.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:12.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:12.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:12.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.076][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:12.076][private$selectFields]
biodb.TRACE[2022-04-12 16:25:12.076][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 16:25:12.091][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 16:25:12.091][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:12.091][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.091][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.091][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.091][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.091][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.091][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.107][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:12.107][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:12.107][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.107][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.107][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.107][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.107][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-12 16:25:12.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.123][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-04-12 16:25:12.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:12.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:12.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:12.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:12.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:12.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:12.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:12.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.201][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:12.201][private$selectFields]
biodb.TRACE[2022-04-12 16:25:12.201][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 16:25:12.201][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 16:25:12.201][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:12.216][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.216][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.216][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.216][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.216][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.216][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.216][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.216][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.216][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:12.232][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:12.232][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.232][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.248][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.248][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-12 16:25:12.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.263][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-12 16:25:12.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:12.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:12.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:12.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:12.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:12.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:12.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:12.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.294][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:12.294][private$selectFields]
biodb.TRACE[2022-04-12 16:25:12.294][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 16:25:12.294][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 16:25:12.294][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:12.294][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.294][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.294][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.294][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.294][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.294][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.310][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.310][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.310][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:12.310][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:12.310][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.310][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.310][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.310][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.310][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-12 16:25:12.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.326][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-04-12 16:25:12.326][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-12 16:25:12.341][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-12 16:25:12.341][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-12 16:25:12.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-12 16:25:12.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-12 16:25:12.357][biodb::testThat]
biodb.INFO [2022-04-12 16:25:12.357][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2022-04-12 16:25:12.357][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:12.357][biodb::testThat]
biodb.TRACE[2022-04-12 16:25:12.357][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-12 16:25:12.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-12 16:25:12.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:12.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:12.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:12.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:12.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:12.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:12.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:12.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:12.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:12.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:12.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:12.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:12.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:12.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:12.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:12.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:12.623][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:12.638][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:12.638][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-12 16:25:12.638][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:12.638][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-12 16:25:12.638][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:12.654][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:12.654][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-12 16:25:12.654][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:12.654][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-12 16:25:12.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:12.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:12.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:12.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:12.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:12.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:12.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:12.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:12.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:12.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:12.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:12.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:12.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:12.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:12.701][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:12.701][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:12.701][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-12 16:25:12.716][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:12.716][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-12 16:25:12.716][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-12 16:25:12.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:12.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:12.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:12.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:12.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:12.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:12.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:12.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.748][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:12.748][private$selectFields]
biodb.TRACE[2022-04-12 16:25:12.748][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 16:25:12.748][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 16:25:12.748][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:12.748][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.763][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.763][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.763][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.763][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.763][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.763][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.763][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.763][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:12.763][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:12.763][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.779][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.779][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.779][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.779][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-12 16:25:12.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:12.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.810][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-12 16:25:12.810][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-12 16:25:12.810][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-12 16:25:12.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:12.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:12.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:12.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:12.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:12.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:12.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:12.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:12.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:12.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:12.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:12.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:12.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:12.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:12.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:12.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:12.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:12.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:13.029][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:13.029][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:13.029][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-04-12 16:25:13.029][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:13.044][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-04-12 16:25:13.044][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:13.044][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:13.044][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-04-12 16:25:13.044][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:13.044][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-04-12 16:25:13.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:13.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:13.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:13.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:13.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:13.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:13.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:13.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:13.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:13.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:13.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:13.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:13.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:13.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:13.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:13.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:13.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:13.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:13.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:13.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:13.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:13.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:13.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:13.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:13.138][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-12 16:25:13.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:13.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:13.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:13.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:13.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:13.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:13.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:13.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.154][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.154][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:13.154][private$selectFields]
biodb.TRACE[2022-04-12 16:25:13.169][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 16:25:13.169][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 16:25:13.169][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:13.169][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.169][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.169][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.169][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.169][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.169][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.169][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.169][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.169][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:13.185][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:13.185][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.185][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.185][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.185][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.185][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-12 16:25:13.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.201][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-04-12 16:25:13.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:13.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:13.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:13.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:13.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:13.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:13.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:13.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.232][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:13.232][private$selectFields]
biodb.TRACE[2022-04-12 16:25:13.232][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 16:25:13.232][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 16:25:13.232][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:13.232][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.232][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.232][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.232][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.232][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.248][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.248][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:13.248][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:13.248][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.248][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.248][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.248][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.248][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-12 16:25:13.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.263][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-12 16:25:13.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:13.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:13.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:13.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:13.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:13.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:13.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:13.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.279][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:13.294][private$selectFields]
biodb.TRACE[2022-04-12 16:25:13.294][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 16:25:13.294][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 16:25:13.294][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:13.294][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.294][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.294][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.294][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.294][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.294][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.294][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.294][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.294][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:13.310][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:13.310][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.310][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.310][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.310][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.310][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-12 16:25:13.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.326][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-04-12 16:25:13.326][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-12 16:25:13.326][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-12 16:25:13.341][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-12 16:25:13.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-12 16:25:13.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-12 16:25:13.341][biodb::testThat]
biodb.INFO [2022-04-12 16:25:13.341][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2022-04-12 16:25:13.341][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:13.341][biodb::testThat]
biodb.TRACE[2022-04-12 16:25:13.341][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-12 16:25:13.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-12 16:25:13.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:13.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:13.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:13.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:13.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:13.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:13.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:13.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:13.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:13.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:13.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:13.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:13.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:13.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:13.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:13.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:13.513][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:13.529][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:13.529][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-12 16:25:13.529][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:13.529][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-12 16:25:13.529][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:13.529][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:13.529][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-12 16:25:13.544][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:13.544][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-12 16:25:13.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:13.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:13.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:13.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:13.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:13.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:13.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:13.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:13.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:13.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:13.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:13.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:13.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:13.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:13.560][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:13.576][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:13.576][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-12 16:25:13.576][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:13.576][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-12 16:25:13.576][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-12 16:25:13.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:13.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:13.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:13.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:13.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:13.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:13.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:13.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.607][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:13.607][private$selectFields]
biodb.TRACE[2022-04-12 16:25:13.607][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 16:25:13.607][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 16:25:13.607][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:13.607][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.607][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.607][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.607][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.607][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.607][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.623][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:13.623][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:13.623][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.623][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.623][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.623][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.623][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-12 16:25:13.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.638][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-12 16:25:13.638][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-12 16:25:13.638][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-12 16:25:13.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:13.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:13.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:13.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:13.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:13.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:13.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:13.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:13.826][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:13.826][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:13.826][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-04-12 16:25:13.826][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:13.826][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-04-12 16:25:13.841][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:13.841][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:13.841][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-04-12 16:25:13.841][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:13.841][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-04-12 16:25:13.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:13.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:13.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:13.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:13.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:13.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:13.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:13.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:13.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:13.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:13.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:13.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:13.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:13.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:13.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:13.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:13.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:13.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:13.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:13.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:13.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:13.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:13.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:13.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:13.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:13.919][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-12 16:25:13.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:13.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:13.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:13.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:13.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:13.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:13.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:13.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.935][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:13.935][private$selectFields]
biodb.TRACE[2022-04-12 16:25:13.935][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 16:25:13.935][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 16:25:13.935][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:13.951][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.951][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.951][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.951][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.951][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.951][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.951][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:13.951][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:13.951][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.951][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.966][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.966][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-12 16:25:13.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.982][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-04-12 16:25:13.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:13.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:13.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:13.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:13.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:13.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:13.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:13.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:13.998][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:13.998][private$selectFields]
biodb.TRACE[2022-04-12 16:25:13.998][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 16:25:13.998][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 16:25:13.998][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:13.998][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.998][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:13.998][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:13.998][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:14.013][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:14.013][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:14.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:14.013][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:14.013][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:14.013][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:14.013][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:14.013][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:14.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:14.013][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:14.013][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-12 16:25:14.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:14.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:14.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:14.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:14.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:14.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:14.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:14.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:14.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:14.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:14.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:14.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:14.029][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-12 16:25:14.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:14.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:14.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:14.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:14.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:14.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:14.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:14.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:14.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:14.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:14.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:14.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:14.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:14.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:14.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:14.060][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:14.060][private$selectFields]
biodb.TRACE[2022-04-12 16:25:14.060][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 16:25:14.060][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 16:25:14.060][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:14.060][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:14.060][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:14.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:14.060][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:14.060][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:14.060][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:14.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:14.076][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:14.076][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:14.076][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:14.076][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:14.076][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:14.076][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:14.076][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:14.076][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-12 16:25:14.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:14.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:14.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:14.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:14.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:14.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:14.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:14.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:14.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:14.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:14.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:14.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:14.091][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-04-12 16:25:14.091][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-12 16:25:14.091][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-12 16:25:14.123][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-12 16:25:14.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-12 16:25:14.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:14.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-12 16:25:14.123][biodb::testThat]
biodb.INFO [2022-04-12 16:25:14.123][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2022-04-12 16:25:14.123][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:14.123][biodb::testThat]
biodb.DEBUG[2022-04-12 16:25:14.138][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2022-04-12 16:25:14.138][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:25:14.138][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2022-04-12 16:25:14.138][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-12 16:25:14.138][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 16:25:14.138][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:25:14.138][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-12 16:25:14.138][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 16:25:14.138][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 16:25:14.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:14.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:14.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:14.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:14.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:14.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:14.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:14.154][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGA".
biodb.DEBUG[2022-04-12 16:25:14.154][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:25:14.154][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:25:14.154][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGA".
biodb.TRACE[2022-04-12 16:25:14.701][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGA).
biodb.DEBUG[2022-04-12 16:25:15.638][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:25:15.685][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b5b4e4941cdc7bc8ff5e29f921c1e9db.content"
biodb.TRACE[2022-04-12 16:25:15.732][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b5b4e4941cdc7bc8ff5e29f921c1e9db.request"
biodb.TRACE[2022-04-12 16:25:15.794][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGA.xml"
biodb.DEBUG[2022-04-12 16:25:15.826][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 16:25:15.873][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:25:15.873][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:25:15.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:15.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:15.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:15.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:15.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:15.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:15.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:15.904][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:15.904][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:15.904][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:15.904][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:15.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:15.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:15.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:15.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:15.935][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:15.951][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:15.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:15.951][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:15.951][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:15.951][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:15.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:15.951][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:15.966][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:15.966][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:15.966][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:15.966][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:15.966][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:15.966][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:15.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:15.982][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:15.982][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:15.982][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:15.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:15.982][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:15.982][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:15.998][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:15.998][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:15.998][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:15.998][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:15.998][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:15.998][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:15.998][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:16.013][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:16.013][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:16.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:16.013][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:16.013][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:16.013][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:16.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:16.029][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:16.029][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:16.029][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:16.029][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:16.029][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:16.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:16.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:16.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:16.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:16.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:16.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:16.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:16.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:16.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:16.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:16.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:16.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:16.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:16.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:16.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:16.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:16.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:16.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:16.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:16.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:16.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:16.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:16.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:16.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:16.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:16.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:16.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:16.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:16.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:16.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:16.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:16.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:16.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:16.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:16.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:16.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:16.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:16.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:16.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:16.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:16.123][self$createEntryFromContent] Accession numbers: .
biodb.DEBUG[2022-04-12 16:25:16.138][self$createEntryFromContent] Found %d entry/ies without an accession number. Set it/them to NULL.1
biodb.INFO [2022-04-12 16:25:16.138][biodb::testThat]
biodb.INFO [2022-04-12 16:25:16.138][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2022-04-12 16:25:16.154][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:16.154][biodb::testThat]
biodb.DEBUG[2022-04-12 16:25:16.169][function(conn, opt)] IDS: [4]: "WRONGB, 15440, 2528, 7799"
biodb.DEBUG[2022-04-12 16:25:16.169][private$loadEntries] Creating entries from ids [3]: "WRONGB, 2528, 7799".
biodb.DEBUG[2022-04-12 16:25:16.169][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2022-04-12 16:25:16.169][cch$loadFileContent] Trying to load 3 files from cache: [3]: "WRONGB, 2528, 7799".
biodb.TRACE[2022-04-12 16:25:16.169][cch$loadFileContent] file.exist = [3]: "FALSE, TRUE, FALSE".
biodb.TRACE[2022-04-12 16:25:16.357][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml".
biodb.DEBUG[2022-04-12 16:25:16.357][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:25:16.373][conn$getEntryContent] 2 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-12 16:25:16.373][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 16:25:16.373][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 16:25:16.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:16.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:16.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:16.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:16.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:16.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:16.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:16.419][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGB".
biodb.DEBUG[2022-04-12 16:25:16.435][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:25:16.435][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:25:16.435][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGB".
biodb.TRACE[2022-04-12 16:25:17.060][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGB).
biodb.DEBUG[2022-04-12 16:25:17.779][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:25:17.826][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32348f2b7cfb460a97c8a8aa145f239f.content"
biodb.TRACE[2022-04-12 16:25:17.888][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32348f2b7cfb460a97c8a8aa145f239f.request"
biodb.DEBUG[2022-04-12 16:25:17.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:17.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:17.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:17.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:17.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:17.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:17.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:17.919][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
biodb.DEBUG[2022-04-12 16:25:17.919][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:25:17.919][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:25:17.919][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799".
biodb.TRACE[2022-04-12 16:25:18.513][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7799).
biodb.DEBUG[2022-04-12 16:25:19.216][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:25:19.248][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/07eb1d5438367a7b1616709944d88b07.content"
biodb.TRACE[2022-04-12 16:25:19.326][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/07eb1d5438367a7b1616709944d88b07.request"
biodb.TRACE[2022-04-12 16:25:19.373][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGB.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml"
biodb.DEBUG[2022-04-12 16:25:19.404][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 16:25:19.435][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2022-04-12 16:25:19.451][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2022-04-12 16:25:19.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:19.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:19.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:19.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:19.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:19.451][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:19.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:19.466][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:19.466][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:19.466][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.466][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:19.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:19.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.498][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:19.498][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:19.498][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.498][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.498][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:19.498][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:19.498][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.498][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.498][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:19.513][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:19.513][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.513][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.513][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:19.513][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:19.513][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.513][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.513][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:19.513][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:19.529][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.529][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.529][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:19.529][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:19.529][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.529][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.529][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:19.529][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:19.544][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.544][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.544][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:19.544][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:19.544][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.544][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.544][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:19.544][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:19.544][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.560][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.560][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:19.560][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:19.560][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.560][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:19.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:19.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:19.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:19.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:19.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:19.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:19.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:19.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:19.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:19.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:19.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:19.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:19.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:19.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:19.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:19.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:19.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:19.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:19.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:19.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:19.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:19.638][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:19.638][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:19.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.638][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:19.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:19.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.669][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:19.669][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:19.669][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.669][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.669][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:19.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:19.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.701][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:19.701][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:19.701][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.701][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.701][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:19.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:19.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.716][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:19.716][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:19.732][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.732][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.732][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:19.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:19.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.748][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:19.748][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:19.748][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.748][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.763][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:19.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:19.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.779][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:19.779][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:19.779][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.779][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.779][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:19.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:19.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.794][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:19.794][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:19.810][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.810][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.810][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:19.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:19.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.826][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:19.826][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:19.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.826][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:19.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:19.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.857][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:19.857][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:19.857][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.857][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.857][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:19.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:19.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.873][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:19.873][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:19.873][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.873][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.873][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:19.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:19.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.904][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:19.904][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:19.904][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.904][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.904][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:19.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:19.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:19.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:19.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:19.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:19.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:19.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:19.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:19.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:19.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:19.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:19.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:19.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:19.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:19.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:19.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:19.966][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:19.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:19.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:19.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:19.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:19.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:19.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:19.982][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:19.982][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:19.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.982][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:19.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:19.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:19.998][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:19.998][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:19.998][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:19.998][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.013][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:20.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:20.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.029][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:20.029][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:20.029][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.029][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.029][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:20.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:20.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.044][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:20.044][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:20.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.044][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:20.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:20.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.060][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:20.060][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:20.076][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.076][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.076][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:20.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:20.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.091][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:20.091][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:20.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.091][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.091][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:20.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:20.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.107][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:20.107][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:20.107][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.123][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.123][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:20.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:20.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.138][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:20.138][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:20.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.138][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:20.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:20.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.154][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:20.154][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:20.154][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.154][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.154][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:20.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:20.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.169][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:20.169][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:20.185][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.185][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.185][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:20.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:20.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.201][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:20.201][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:20.201][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.201][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.201][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:20.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:20.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:20.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:20.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:20.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:20.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:20.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:20.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:20.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:20.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:20.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:20.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:20.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:20.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:20.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:20.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:20.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:20.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:20.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:20.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:20.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:20.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:20.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:20.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:20.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:20.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:20.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:20.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:20.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:20.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:20.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:20.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:20.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:20.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:20.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:20.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:20.294][self$createEntryFromContent] Accession numbers: , 2528, 7799.
biodb.DEBUG[2022-04-12 16:25:20.310][self$createEntryFromContent] Found %d entry/ies without an accession number. Set it/them to NULL.1
biodb.DEBUG[2022-04-12 16:25:20.310][function(conn, opt)] Entries: [4]: "NULL, <environment>, <environment>, <environment>"
biodb.INFO [2022-04-12 16:25:20.310][biodb::testThat]
biodb.INFO [2022-04-12 16:25:20.326][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2022-04-12 16:25:20.326][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:20.326][biodb::testThat]
biodb.INFO [2022-04-12 16:25:20.341][biodb::testThat]
biodb.INFO [2022-04-12 16:25:20.341][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2022-04-12 16:25:20.341][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:20.341][biodb::testThat]
biodb.INFO [2022-04-12 16:25:20.357][biodb::testThat]
biodb.INFO [2022-04-12 16:25:20.357][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2022-04-12 16:25:20.357][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:20.357][biodb::testThat]
biodb.DEBUG[2022-04-12 16:25:20.357][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1*&searchCategory=CHEBI ID&maximumResults=100&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:20.373][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:25:20.373][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:25:20.373][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1*&searchCategory=CHEBI%20ID&maximumResults=100&starsCategory=ALL".
biodb.TRACE[2022-04-12 16:25:20.982][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1*&searchCategory=CHEBI%20ID&maximumResults=100&starsCategory=ALL).
biodb.DEBUG[2022-04-12 16:25:21.826][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:25:21.873][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/abfdad4f2c265f1c152262cabd0cf864.content"
biodb.TRACE[2022-04-12 16:25:21.935][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/abfdad4f2c265f1c152262cabd0cf864.request"
biodb.INFO [2022-04-12 16:25:21.966][biodb::testThat]
biodb.INFO [2022-04-12 16:25:21.982][biodb::testThat] Running test function test.annotateMzValues (" annotateMzValues() works correctly. ").
biodb.INFO [2022-04-12 16:25:21.982][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:21.982][biodb::testThat]
biodb.ERROR[2022-04-12 16:25:21.998][conn$annotateMzValues] No column named "mz" was found inside data frame.
biodb.ERROR[2022-04-12 16:25:22.029][ef$checkIsDefined] Field(s) "foo" is/are not defined.
biodb.INFO [2022-04-12 16:25:22.045][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-04-12 16:25:22.045][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2022-04-12 16:25:22.045][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2022-04-12 16:25:22.045][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-04-12 16:25:22.045][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:22.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:22.045][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.060][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-04-12 16:25:22.076][biodb::testContext]
biodb.INFO [2022-04-12 16:25:22.076][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 16:25:22.076][biodb::testContext] Test context - Test conversions
biodb.INFO [2022-04-12 16:25:22.076][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 16:25:22.076][biodb::testContext]
biodb.INFO [2022-04-12 16:25:22.091][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-04-12 16:25:22.107][self$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-04-12 16:25:22.107][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 16:25:22.107][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-04-12 16:25:22.107][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-04-12 16:25:22.107][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.123][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-04-12 16:25:22.123][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-04-12 16:25:22.123][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.123][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-04-12 16:25:22.123][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-04-12 16:25:22.123][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.138][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-04-12 16:25:22.138][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-04-12 16:25:22.138][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-04-12 16:25:22.138][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.138][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-04-12 16:25:22.138][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-04-12 16:25:22.154][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-04-12 16:25:22.154][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.154][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-04-12 16:25:22.154][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-04-12 16:25:22.154][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.154][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-04-12 16:25:22.170][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-04-12 16:25:22.170][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-04-12 16:25:22.170][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.170][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-04-12 16:25:22.170][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-04-12 16:25:22.170][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.170][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-04-12 16:25:22.185][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-04-12 16:25:22.185][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-04-12 16:25:22.185][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.185][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-04-12 16:25:22.185][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-04-12 16:25:22.185][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-04-12 16:25:22.185][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-04-12 16:25:22.201][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-04-12 16:25:22.201][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-04-12 16:25:22.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.201][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-04-12 16:25:22.201][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-04-12 16:25:22.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.216][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-04-12 16:25:22.216][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-04-12 16:25:22.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.216][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-04-12 16:25:22.232][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-04-12 16:25:22.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.232][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-04-12 16:25:22.232][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-04-12 16:25:22.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.232][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-04-12 16:25:22.232][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-04-12 16:25:22.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.248][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-04-12 16:25:22.248][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-04-12 16:25:22.248][self$set] Set key svn.binary.path to "C:\PROGRA~1\TORTOI~1\bin\svn.exe".
biodb.DEBUG[2022-04-12 16:25:22.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.248][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-04-12 16:25:22.263][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-04-12 16:25:22.263][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-04-12 16:25:22.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.263][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-04-12 16:25:22.263][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:22.263][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-04-12 16:25:22.263][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:22.263][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:22.279][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:22.279][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:22.279][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:22.279][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 16:25:22.279][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 16:25:22.279][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:22.279][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:22.279][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-04-12 16:25:22.279][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:22.279][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:22.295][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:22.295][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 16:25:22.295][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 16:25:22.295][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 16:25:22.295][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 16:25:22.295][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 16:25:22.295][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 16:25:22.295][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:22.295][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:22.295][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:22.295][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:22.295][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:22.295][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:22.295][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:22.295][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:22.310][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:22.310][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:22.310][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:22.310][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-04-12 16:25:22.310][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:22.310][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 16:25:22.310][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:22.310][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:22.310][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:22.326][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:22.326][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:22.326][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 16:25:22.326][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 16:25:22.326][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:22.326][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:22.326][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-04-12 16:25:22.326][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:22.326][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:22.326][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:22.341][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 16:25:22.341][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 16:25:22.341][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 16:25:22.341][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 16:25:22.341][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 16:25:22.341][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 16:25:22.341][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:22.341][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:22.341][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:22.341][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:22.341][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:22.341][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:22.341][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:22.341][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:22.341][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:22.357][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:22.357][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:22.357][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-04-12 16:25:22.357][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:22.357][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-04-12 16:25:22.357][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:22.357][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:22.357][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:22.357][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:22.357][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:22.373][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 16:25:22.373][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 16:25:22.373][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:22.373][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:22.373][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-04-12 16:25:22.373][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:22.373][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:22.373][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:22.373][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:22.373][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 16:25:22.388][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:22.388][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:22.388][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:22.388][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:22.388][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:22.388][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:22.388][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:22.388][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:22.388][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:22.388][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:22.388][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:22.404][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-04-12 16:25:22.404][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:22.404][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 16:25:22.404][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:22.404][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:22.404][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:22.404][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:22.404][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:22.404][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 16:25:22.404][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 16:25:22.420][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:22.420][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:22.420][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-04-12 16:25:22.420][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:22.420][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:22.420][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:22.420][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:22.420][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 16:25:22.420][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:22.420][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:22.420][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:22.435][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:22.435][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:22.435][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:22.435][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:22.435][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:22.435][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:22.435][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:22.435][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:22.435][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 16:25:22.435][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.482][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.482][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.482][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.498][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.498][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.513][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.513][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.513][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.529][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.529][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.529][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.545][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.545][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-04-12 16:25:22.545][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-04-12 16:25:22.545][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-04-12 16:25:22.560][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-04-12 16:25:22.560][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-12 16:25:22.560][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-04-12 16:25:22.560][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-04-12 16:25:22.560][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-04-12 16:25:22.560][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-04-12 16:25:22.560][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-04-12 16:25:22.560][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-12 16:25:22.576][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-04-12 16:25:22.576][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-04-12 16:25:22.576][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-04-12 16:25:22.576][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-04-12 16:25:22.576][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-04-12 16:25:22.576][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-04-12 16:25:22.576][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-04-12 16:25:22.576][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-12 16:25:22.576][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-04-12 16:25:22.591][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-04-12 16:25:22.591][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-04-12 16:25:22.591][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-04-12 16:25:22.591][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-04-12 16:25:22.591][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-04-12 16:25:22.591][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-04-12 16:25:22.591][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-04-12 16:25:22.591][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-04-12 16:25:22.591][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-04-12 16:25:22.607][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-04-12 16:25:22.607][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-04-12 16:25:22.607][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-04-12 16:25:22.607][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-04-12 16:25:22.607][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-04-12 16:25:22.607][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-04-12 16:25:22.607][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-04-12 16:25:22.607][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-04-12 16:25:22.607][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-04-12 16:25:22.623][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-04-12 16:25:22.623][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-04-12 16:25:22.623][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-04-12 16:25:22.623][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-04-12 16:25:22.623][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-04-12 16:25:22.623][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-04-12 16:25:22.623][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-04-12 16:25:22.623][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-04-12 16:25:22.623][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-04-12 16:25:22.638][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-04-12 16:25:22.638][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-04-12 16:25:22.638][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-04-12 16:25:22.638][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-04-12 16:25:22.638][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-04-12 16:25:22.638][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-04-12 16:25:22.654][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-04-12 16:25:22.654][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-04-12 16:25:22.654][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-04-12 16:25:22.654][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-04-12 16:25:22.654][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-04-12 16:25:22.654][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-04-12 16:25:22.654][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-04-12 16:25:22.654][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-04-12 16:25:22.654][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-04-12 16:25:22.670][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-04-12 16:25:22.670][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-04-12 16:25:22.670][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-04-12 16:25:22.670][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-04-12 16:25:22.670][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-12 16:25:22.670][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-12 16:25:22.670][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-04-12 16:25:22.670][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-04-12 16:25:22.670][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-04-12 16:25:22.685][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-04-12 16:25:22.685][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-04-12 16:25:22.685][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-04-12 16:25:22.685][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-04-12 16:25:22.685][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-04-12 16:25:22.685][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-04-12 16:25:22.685][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-04-12 16:25:22.685][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-04-12 16:25:22.685][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-04-12 16:25:22.685][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-04-12 16:25:22.701][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-04-12 16:25:22.701][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-04-12 16:25:22.701][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-04-12 16:25:22.701][initialize] This is biodb version 1.2.2.
biodb.DEBUG[2022-04-12 16:25:22.701][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 16:25:22.701][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.701][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.701][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:22.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:22.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:22.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:22.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:22.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:22.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.732][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:22.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:22.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.732][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:22.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:22.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.748][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:22.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:22.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.748][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:22.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:22.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:22.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:22.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:22.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:22.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.779][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:22.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:22.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.779][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:22.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:22.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.795][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:22.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:22.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.795][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:22.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:22.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.810][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:22.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:22.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.810][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:22.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:22.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.826][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:22.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:22.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.826][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:22.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:22.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:22.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.841][biodb$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2022-04-12 16:25:22.841][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2022-04-12 16:25:22.841][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:22.841][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-04-12 16:25:22.841][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:22.841][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:22.841][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:22.841][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:22.841][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:22.841][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2022-04-12 16:25:22.841][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-04-12 16:25:22.857][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:22.857][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:22.857][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2022-04-12 16:25:22.857][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:22.857][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2022-04-12 16:25:22.857][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2022-04-12 16:25:22.857][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2022-04-12 16:25:22.857][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2022-04-12 16:25:22.857][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2022-04-12 16:25:22.857][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2022-04-12 16:25:22.857][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2022-04-12 16:25:22.857][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2022-04-12 16:25:22.857][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2022-04-12 16:25:22.857][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2022-04-12 16:25:22.857][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2022-04-12 16:25:22.857][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:22.857][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 16:25:22.857][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 16:25:22.857][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 16:25:22.857][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-04-12 16:25:22.857][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:22.857][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:22.857][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:22.857][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:22.857][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:22.873][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:22.873][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-12 16:25:22.873][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2022-04-12 16:25:22.873][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:22.873][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:22.873][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:22.873][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2022-04-12 16:25:22.873][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2022-04-12 16:25:22.873][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-12 16:25:22.873][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-12 16:25:22.873][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2022-04-12 16:25:22.873][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-12 16:25:22.873][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-12 16:25:22.888][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-12 16:25:22.888][super$initialize] Initialize connector chebi.
biodb.DEBUG[2022-04-12 16:25:22.888][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2022-04-12 16:25:22.888][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2022-04-12 16:25:22.888][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2022-04-12 16:25:22.888][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-04-12 16:25:22.888][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-04-12 16:25:22.888][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2022-04-12 16:25:22.888][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2022-04-12 16:25:22.904][biodb::testThat]
biodb.INFO [2022-04-12 16:25:22.904][biodb::testThat] Running test function test_chebi_convCasToChebi (" convCasToChebi() works. ").
biodb.INFO [2022-04-12 16:25:22.904][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:22.904][biodb::testThat]
biodb.DEBUG[2022-04-12 16:25:22.904][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2022-04-12 16:25:22.920][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:22.920][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2022-04-12 16:25:22.920][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:22.920][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2022-04-12 16:25:22.920][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:22.920][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:22.920][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2022-04-12 16:25:22.935][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:22.951][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2022-04-12 16:25:22.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:22.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:22.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:22.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:22.966][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:22.966][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:22.966][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2022-04-12 16:25:22.966][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:22.998][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2022-04-12 16:25:22.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:22.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:22.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:22.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:22.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:22.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:22.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:23.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:23.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:23.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:23.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:23.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:23.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:23.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:23.029][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:23.045][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:23.045][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2022-04-12 16:25:23.045][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:23.045][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2022-04-12 16:25:23.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:23.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:23.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:23.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:23.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:23.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:23.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:23.060][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:23.060][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:23.060][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2022-04-12 16:25:23.060][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:23.076][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2022-04-12 16:25:23.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:23.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:23.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:23.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:23.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:23.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:23.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:23.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:23.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:23.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:23.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:23.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:23.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:23.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:23.091][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:23.091][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:23.091][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2022-04-12 16:25:23.091][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:23.091][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2022-04-12 16:25:23.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:23.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:23.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:23.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:23.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:23.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:23.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:23.107][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:23.107][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:23.123][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2022-04-12 16:25:23.123][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:23.123][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2022-04-12 16:25:23.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:23.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:23.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:23.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:23.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:23.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:23.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:23.123][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:23.138][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:23.138][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70e3912746e7e39b39fbbffe6c90b502".
biodb.TRACE[2022-04-12 16:25:23.138][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:23.216][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70e3912746e7e39b39fbbffe6c90b502.content".
biodb.DEBUG[2022-04-12 16:25:23.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:23.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:23.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:23.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:23.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:23.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:23.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-04-12 16:25:23.248][biodb::testThat]
biodb.INFO [2022-04-12 16:25:23.248][biodb::testThat] Running test function test_chebi_convInchiToChebi (" convInchiToChebi() works. ").
biodb.INFO [2022-04-12 16:25:23.248][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:23.248][biodb::testThat]
biodb.DEBUG[2022-04-12 16:25:23.248][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI=1S/C15H24/c1-9(2)11-7-8-15(4)12-6-5-10(3)14(15)13(11)12/h5,9,11-14H,6-8H2,1-4H3/t11?,12?,13?,14?,15-/m0/s1&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:23.263][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:25:23.263][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:25:23.263][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI=1S/C15H24/c1-9(2)11-7-8-15(4)12-6-5-10(3)14(15)13(11)12/h5,9,11-14H,6-8H2,1-4H3/t11?,12?,13?,14?,15-/m0/s1&searchCategory=INCHI/INCHI%20KEY&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2022-04-12 16:25:23.857][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI=1S/C15H24/c1-9(2)11-7-8-15(4)12-6-5-10(3)14(15)13(11)12/h5,9,11-14H,6-8H2,1-4H3/t11?,12?,13?,14?,15-/m0/s1&searchCategory=INCHI/INCHI%20KEY&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2022-04-12 16:25:24.529][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:25:24.576][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3d0a94707e73df0ba810a5a87df958c6.content"
biodb.TRACE[2022-04-12 16:25:24.638][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3d0a94707e73df0ba810a5a87df958c6.request"
biodb.DEBUG[2022-04-12 16:25:24.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:24.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:24.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:24.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:24.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:24.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:24.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:24.701][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:24.701][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:25:24.701][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:25:24.701][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI/INCHI%20KEY&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2022-04-12 16:25:25.310][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI/INCHI%20KEY&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2022-04-12 16:25:25.982][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:25:26.029][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c23a09621704f6dcea62f90283def982.content"
biodb.TRACE[2022-04-12 16:25:26.091][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c23a09621704f6dcea62f90283def982.request"
biodb.DEBUG[2022-04-12 16:25:26.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:26.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:26.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:26.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:26.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:26.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-04-12 16:25:26.123][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-04-12 16:25:26.138][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2022-04-12 16:25:26.138][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2022-04-12 16:25:26.138][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-04-12 16:25:26.138][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:26.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:26.138][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:26.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:26.154][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-04-12 16:25:26.154][biodb::testContext]
biodb.INFO [2022-04-12 16:25:26.154][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 16:25:26.154][biodb::testContext] Test context - Test web services
biodb.INFO [2022-04-12 16:25:26.170][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 16:25:26.170][biodb::testContext]
biodb.INFO [2022-04-12 16:25:26.185][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-04-12 16:25:26.201][self$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-04-12 16:25:26.201][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 16:25:26.216][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-04-12 16:25:26.216][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-04-12 16:25:26.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.216][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-04-12 16:25:26.216][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-04-12 16:25:26.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.232][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-04-12 16:25:26.232][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-04-12 16:25:26.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.248][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-04-12 16:25:26.248][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-04-12 16:25:26.248][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-04-12 16:25:26.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.248][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-04-12 16:25:26.248][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-04-12 16:25:26.263][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-04-12 16:25:26.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.263][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-04-12 16:25:26.263][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-04-12 16:25:26.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.279][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-04-12 16:25:26.279][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-04-12 16:25:26.279][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-04-12 16:25:26.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.279][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-04-12 16:25:26.295][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-04-12 16:25:26.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.310][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-04-12 16:25:26.310][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-04-12 16:25:26.310][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-04-12 16:25:26.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.326][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-04-12 16:25:26.326][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-04-12 16:25:26.326][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-04-12 16:25:26.326][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-04-12 16:25:26.326][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-04-12 16:25:26.326][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-04-12 16:25:26.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.341][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-04-12 16:25:26.341][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-04-12 16:25:26.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.341][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-04-12 16:25:26.341][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-04-12 16:25:26.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.357][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-04-12 16:25:26.357][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-04-12 16:25:26.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.357][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-04-12 16:25:26.357][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-04-12 16:25:26.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.373][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-04-12 16:25:26.373][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-04-12 16:25:26.373][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.373][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-04-12 16:25:26.373][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-04-12 16:25:26.388][self$set] Set key svn.binary.path to "C:\PROGRA~1\TORTOI~1\bin\svn.exe".
biodb.DEBUG[2022-04-12 16:25:26.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.388][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-04-12 16:25:26.388][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-04-12 16:25:26.388][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-04-12 16:25:26.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.404][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-04-12 16:25:26.404][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:26.404][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-04-12 16:25:26.404][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:26.404][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:26.404][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:26.420][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:26.420][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:26.420][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 16:25:26.420][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 16:25:26.420][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:26.420][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:26.420][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-04-12 16:25:26.420][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:26.420][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:26.435][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:26.435][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 16:25:26.435][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 16:25:26.435][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 16:25:26.435][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 16:25:26.435][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 16:25:26.435][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 16:25:26.435][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:26.435][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:26.435][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:26.435][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:26.435][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:26.435][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:26.451][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:26.451][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:26.451][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:26.451][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:26.451][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:26.451][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-04-12 16:25:26.451][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:26.451][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 16:25:26.466][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:26.466][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:26.466][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:26.466][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:26.466][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:26.466][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 16:25:26.466][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 16:25:26.466][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:26.466][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:26.466][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-04-12 16:25:26.482][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:26.482][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:26.482][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:26.482][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 16:25:26.482][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 16:25:26.482][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 16:25:26.482][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 16:25:26.482][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 16:25:26.482][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 16:25:26.482][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:26.482][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:26.482][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:26.482][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:26.498][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:26.498][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:26.498][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:26.498][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:26.498][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:26.498][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:26.498][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:26.498][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-04-12 16:25:26.498][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:26.513][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-04-12 16:25:26.513][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:26.513][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:26.513][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:26.513][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:26.513][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:26.513][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 16:25:26.513][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 16:25:26.513][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:26.529][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:26.529][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-04-12 16:25:26.529][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:26.529][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:26.529][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:26.529][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:26.529][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 16:25:26.529][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:26.529][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:26.545][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:26.545][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:26.545][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:26.545][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:26.545][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:26.545][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:26.545][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:26.545][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:26.545][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:26.545][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-04-12 16:25:26.560][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:26.560][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 16:25:26.560][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:26.560][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:26.560][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:26.560][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:26.560][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:26.560][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 16:25:26.576][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 16:25:26.576][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:26.576][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:26.576][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-04-12 16:25:26.576][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:26.576][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:26.576][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:26.576][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:26.576][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 16:25:26.591][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:26.591][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:26.591][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:26.591][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:26.591][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:26.591][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:26.591][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:26.591][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:26.591][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:26.591][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:26.607][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:26.607][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 16:25:26.607][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:26.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:26.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:26.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:26.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.623][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:26.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:26.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.623][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:26.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:26.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.638][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:26.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:26.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.638][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:26.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:26.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:26.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:26.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:26.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:26.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:26.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:26.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.670][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:26.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:26.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.670][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:26.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:26.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.685][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:26.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:26.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.685][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:26.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:26.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.701][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:26.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:26.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.701][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:26.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:26.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:26.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:26.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:26.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:26.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.716][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-04-12 16:25:26.716][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-04-12 16:25:26.732][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-04-12 16:25:26.732][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-04-12 16:25:26.732][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-12 16:25:26.732][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-04-12 16:25:26.732][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-04-12 16:25:26.732][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-04-12 16:25:26.732][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-04-12 16:25:26.748][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-04-12 16:25:26.748][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-12 16:25:26.748][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-04-12 16:25:26.748][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-04-12 16:25:26.748][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-04-12 16:25:26.748][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-04-12 16:25:26.748][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-04-12 16:25:26.748][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-04-12 16:25:26.748][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-04-12 16:25:26.763][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-12 16:25:26.763][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-04-12 16:25:26.763][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-04-12 16:25:26.763][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-04-12 16:25:26.763][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-04-12 16:25:26.763][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-04-12 16:25:26.763][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-04-12 16:25:26.779][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-04-12 16:25:26.779][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-04-12 16:25:26.779][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-04-12 16:25:26.779][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-04-12 16:25:26.779][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-04-12 16:25:26.779][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-04-12 16:25:26.779][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-04-12 16:25:26.779][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-04-12 16:25:26.795][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-04-12 16:25:26.795][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-04-12 16:25:26.795][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-04-12 16:25:26.795][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-04-12 16:25:26.795][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-04-12 16:25:26.795][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-04-12 16:25:26.810][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-04-12 16:25:26.810][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-04-12 16:25:26.810][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-04-12 16:25:26.810][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-04-12 16:25:26.810][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-04-12 16:25:26.810][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-04-12 16:25:26.810][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-04-12 16:25:26.810][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-04-12 16:25:26.810][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-04-12 16:25:26.826][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-04-12 16:25:26.826][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-04-12 16:25:26.826][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-04-12 16:25:26.826][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-04-12 16:25:26.826][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-04-12 16:25:26.826][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-04-12 16:25:26.826][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-04-12 16:25:26.826][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-04-12 16:25:26.841][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-04-12 16:25:26.841][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-04-12 16:25:26.841][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-04-12 16:25:26.841][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-04-12 16:25:26.841][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-04-12 16:25:26.841][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-04-12 16:25:26.841][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-04-12 16:25:26.841][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-04-12 16:25:26.841][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-04-12 16:25:26.857][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-04-12 16:25:26.857][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-12 16:25:26.857][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-12 16:25:26.857][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-04-12 16:25:26.857][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-04-12 16:25:26.857][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-04-12 16:25:26.857][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-04-12 16:25:26.857][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-04-12 16:25:26.857][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-04-12 16:25:26.873][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-04-12 16:25:26.873][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-04-12 16:25:26.873][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-04-12 16:25:26.873][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-04-12 16:25:26.873][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-04-12 16:25:26.873][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-04-12 16:25:26.873][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-04-12 16:25:26.873][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-04-12 16:25:26.873][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-04-12 16:25:26.888][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-04-12 16:25:26.888][initialize] This is biodb version 1.2.2.
biodb.DEBUG[2022-04-12 16:25:26.888][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 16:25:26.888][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:26.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:26.888][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:26.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:26.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:26.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:26.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:26.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:26.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:26.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:26.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:26.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:26.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:26.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:26.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.920][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:26.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:26.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:26.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:26.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.920][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:26.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:26.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:26.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:26.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.935][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:26.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:26.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:26.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:26.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.935][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:26.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:26.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:26.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:26.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:26.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:26.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:26.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:26.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:26.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:26.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:26.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:26.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.966][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:26.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:26.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:26.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:26.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.966][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:26.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:26.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:26.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:26.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:26.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:26.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:26.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:26.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:26.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:26.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:26.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:26.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:26.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:26.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:26.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:26.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:26.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:26.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:26.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:27.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:27.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:27.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:27.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:27.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:27.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:27.013][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:27.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:27.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:27.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:27.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:27.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:27.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:27.013][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:27.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:27.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:27.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:27.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:27.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:27.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:27.029][biodb$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2022-04-12 16:25:27.029][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2022-04-12 16:25:27.029][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:27.029][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-04-12 16:25:27.029][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:27.045][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:27.045][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:27.045][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:27.045][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:27.045][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2022-04-12 16:25:27.045][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-04-12 16:25:27.045][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:27.045][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:27.045][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2022-04-12 16:25:27.045][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:27.045][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2022-04-12 16:25:27.045][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2022-04-12 16:25:27.045][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2022-04-12 16:25:27.045][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2022-04-12 16:25:27.045][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2022-04-12 16:25:27.045][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2022-04-12 16:25:27.045][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2022-04-12 16:25:27.045][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2022-04-12 16:25:27.045][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2022-04-12 16:25:27.045][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2022-04-12 16:25:27.045][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2022-04-12 16:25:27.045][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:27.060][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 16:25:27.060][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 16:25:27.060][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 16:25:27.060][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-04-12 16:25:27.060][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:27.060][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:27.060][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:27.060][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:27.060][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:27.060][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:27.060][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-12 16:25:27.060][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2022-04-12 16:25:27.060][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:27.060][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:27.060][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:27.060][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2022-04-12 16:25:27.060][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2022-04-12 16:25:27.076][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-12 16:25:27.076][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-12 16:25:27.076][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2022-04-12 16:25:27.076][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-12 16:25:27.076][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-12 16:25:27.076][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-12 16:25:27.076][super$initialize] Initialize connector chebi.
biodb.DEBUG[2022-04-12 16:25:27.076][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2022-04-12 16:25:27.076][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2022-04-12 16:25:27.091][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2022-04-12 16:25:27.091][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-04-12 16:25:27.091][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-04-12 16:25:27.091][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2022-04-12 16:25:27.091][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2022-04-12 16:25:27.091][biodb::testThat]
biodb.INFO [2022-04-12 16:25:27.091][biodb::testThat] Running test function test.chebi.wsGetLiteEntity (" Web service getLiteEntity works fine. ").
biodb.INFO [2022-04-12 16:25:27.091][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:27.091][biodb::testThat]
biodb.DEBUG[2022-04-12 16:25:27.091][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2022-04-12 16:25:27.107][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:27.107][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2022-04-12 16:25:27.107][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:27.107][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2022-04-12 16:25:27.107][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:27.123][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:25:27.123][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:25:27.123][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI%20ID&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2022-04-12 16:25:27.748][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI%20ID&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2022-04-12 16:25:28.466][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:25:28.513][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content"
biodb.TRACE[2022-04-12 16:25:28.560][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.request"
biodb.INFO [2022-04-12 16:25:28.591][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-04-12 16:25:28.591][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2022-04-12 16:25:28.591][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2022-04-12 16:25:28.591][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-04-12 16:25:28.607][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:28.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:28.607][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:28.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:28.607][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:28.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-04-12 16:25:28.623][biodb::testContext]
biodb.INFO [2022-04-12 16:25:28.623][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 16:25:28.623][biodb::testContext] Test context - Non regression tests
biodb.INFO [2022-04-12 16:25:28.623][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 16:25:28.623][biodb::testContext]
biodb.INFO [2022-04-12 16:25:28.654][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-04-12 16:25:28.654][self$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-04-12 16:25:28.654][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 16:25:28.654][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-04-12 16:25:28.670][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-04-12 16:25:28.670][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:28.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:28.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:28.670][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-04-12 16:25:28.670][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-04-12 16:25:28.670][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:28.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:28.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:28.685][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-04-12 16:25:28.685][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-04-12 16:25:28.685][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:28.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:28.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:28.685][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-04-12 16:25:28.685][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-04-12 16:25:28.685][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-04-12 16:25:28.701][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:28.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:28.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:28.701][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-04-12 16:25:28.701][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-04-12 16:25:28.701][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-04-12 16:25:28.701][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:28.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:28.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:28.716][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-04-12 16:25:28.716][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-04-12 16:25:28.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:28.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:28.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:28.716][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-04-12 16:25:28.716][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-04-12 16:25:28.716][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-04-12 16:25:28.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:28.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:28.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:28.732][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-04-12 16:25:28.732][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-04-12 16:25:28.732][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:28.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:28.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:28.732][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-04-12 16:25:28.748][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-04-12 16:25:28.748][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-04-12 16:25:28.748][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:28.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:28.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:28.748][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-04-12 16:25:28.748][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-04-12 16:25:28.748][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-04-12 16:25:28.748][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-04-12 16:25:28.763][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-04-12 16:25:28.763][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-04-12 16:25:28.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:28.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:28.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:28.763][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-04-12 16:25:28.763][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-04-12 16:25:28.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:28.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:28.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:28.779][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-04-12 16:25:28.779][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-04-12 16:25:28.779][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:28.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:28.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:28.779][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-04-12 16:25:28.779][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-04-12 16:25:28.779][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:28.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:28.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:28.795][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-04-12 16:25:28.795][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-04-12 16:25:28.795][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:28.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:28.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:28.795][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-04-12 16:25:28.795][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-04-12 16:25:28.795][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:28.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:28.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:28.810][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-04-12 16:25:28.810][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-04-12 16:25:28.810][self$set] Set key svn.binary.path to "C:\PROGRA~1\TORTOI~1\bin\svn.exe".
biodb.DEBUG[2022-04-12 16:25:28.810][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:28.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:28.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:28.810][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-04-12 16:25:28.826][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-04-12 16:25:28.826][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-04-12 16:25:28.826][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:28.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:28.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:28.841][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-04-12 16:25:28.841][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:28.841][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-04-12 16:25:28.841][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:28.841][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:28.841][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:28.857][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:28.857][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:28.857][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 16:25:28.857][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 16:25:28.857][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:28.857][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:28.857][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-04-12 16:25:28.857][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:28.857][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:28.857][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:28.873][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 16:25:28.873][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 16:25:28.873][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 16:25:28.873][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 16:25:28.873][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 16:25:28.873][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 16:25:28.873][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:28.873][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:28.873][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:28.873][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:28.873][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:28.873][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:28.873][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:28.873][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:28.873][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:28.888][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:28.888][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:28.888][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-04-12 16:25:28.888][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:28.888][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 16:25:28.888][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:28.888][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:28.888][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:28.888][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:28.904][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:28.904][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 16:25:28.904][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 16:25:28.904][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:28.904][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:28.904][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-04-12 16:25:28.904][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:28.904][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:28.904][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:28.904][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 16:25:28.904][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 16:25:28.904][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 16:25:28.904][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 16:25:28.904][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 16:25:28.904][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 16:25:28.920][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:28.920][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:28.920][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:28.920][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:28.920][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:28.920][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:28.920][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:28.920][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:28.920][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:28.920][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:28.920][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:28.935][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-04-12 16:25:28.935][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:28.935][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-04-12 16:25:28.935][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:28.935][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:28.935][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:28.935][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:28.935][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:28.935][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 16:25:28.951][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 16:25:28.951][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:28.951][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:28.951][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-04-12 16:25:28.951][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:28.951][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:28.951][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:28.951][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:28.951][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 16:25:28.951][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:28.951][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:28.966][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:28.966][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:28.966][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:28.966][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:28.966][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:28.966][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:28.966][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:28.966][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:28.966][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:28.966][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-04-12 16:25:28.982][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:28.982][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 16:25:28.982][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:28.982][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:28.982][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:28.982][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:28.982][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:28.982][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 16:25:28.982][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 16:25:28.982][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:28.982][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:28.998][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-04-12 16:25:28.998][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:28.998][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:28.998][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:28.998][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:28.998][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 16:25:28.998][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:28.998][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:28.998][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:28.998][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:28.998][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:28.998][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:29.013][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:29.013][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:29.013][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:29.013][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:29.013][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:29.013][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 16:25:29.013][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.013][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:29.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:29.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:29.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:29.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.045][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:29.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.045][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:29.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.060][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:29.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.060][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:29.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.060][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:29.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.076][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:29.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.076][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:29.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.091][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:29.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.091][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:29.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.091][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:29.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.107][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:29.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.107][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:29.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.123][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:29.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.123][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-04-12 16:25:29.123][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-04-12 16:25:29.123][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-04-12 16:25:29.123][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-04-12 16:25:29.123][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-12 16:25:29.138][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-04-12 16:25:29.138][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-04-12 16:25:29.138][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-04-12 16:25:29.138][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-04-12 16:25:29.138][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-04-12 16:25:29.138][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-12 16:25:29.138][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-04-12 16:25:29.138][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-04-12 16:25:29.154][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-04-12 16:25:29.154][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-04-12 16:25:29.154][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-04-12 16:25:29.154][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-04-12 16:25:29.154][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-04-12 16:25:29.154][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-12 16:25:29.154][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-04-12 16:25:29.154][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-04-12 16:25:29.154][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-04-12 16:25:29.170][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-04-12 16:25:29.170][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-04-12 16:25:29.170][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-04-12 16:25:29.170][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-04-12 16:25:29.170][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-04-12 16:25:29.170][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-04-12 16:25:29.170][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-04-12 16:25:29.170][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-04-12 16:25:29.185][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-04-12 16:25:29.185][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-04-12 16:25:29.185][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-04-12 16:25:29.185][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-04-12 16:25:29.185][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-04-12 16:25:29.185][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-04-12 16:25:29.185][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-04-12 16:25:29.185][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-04-12 16:25:29.185][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-04-12 16:25:29.201][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-04-12 16:25:29.201][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-04-12 16:25:29.201][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-04-12 16:25:29.201][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-04-12 16:25:29.201][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-04-12 16:25:29.201][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-04-12 16:25:29.201][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-04-12 16:25:29.201][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-04-12 16:25:29.201][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-04-12 16:25:29.216][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-04-12 16:25:29.216][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-04-12 16:25:29.216][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-04-12 16:25:29.216][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-04-12 16:25:29.216][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-04-12 16:25:29.216][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-04-12 16:25:29.216][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-04-12 16:25:29.216][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-04-12 16:25:29.216][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-04-12 16:25:29.232][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-04-12 16:25:29.232][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-04-12 16:25:29.232][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-04-12 16:25:29.232][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-04-12 16:25:29.232][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-04-12 16:25:29.232][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-04-12 16:25:29.232][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-04-12 16:25:29.248][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-04-12 16:25:29.248][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-04-12 16:25:29.248][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-12 16:25:29.248][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-12 16:25:29.248][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-04-12 16:25:29.248][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-04-12 16:25:29.248][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-04-12 16:25:29.263][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-04-12 16:25:29.263][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-04-12 16:25:29.263][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-04-12 16:25:29.263][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-04-12 16:25:29.263][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-04-12 16:25:29.263][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-04-12 16:25:29.263][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-04-12 16:25:29.263][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-04-12 16:25:29.263][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-04-12 16:25:29.279][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-04-12 16:25:29.279][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-04-12 16:25:29.279][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-04-12 16:25:29.279][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-04-12 16:25:29.279][initialize] This is biodb version 1.2.2.
biodb.DEBUG[2022-04-12 16:25:29.279][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 16:25:29.279][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.279][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:29.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:29.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:29.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:29.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:29.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:29.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:29.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:29.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:29.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:29.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:29.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:29.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:29.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:29.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:29.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:29.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:29.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:29.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:29.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:29.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:29.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:29.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:29.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:29.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:29.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:29.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:29.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:29.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:29.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:29.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:29.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:29.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:29.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.373][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:29.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:29.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:29.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.373][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:29.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:29.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:29.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:29.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:29.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:29.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:29.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:29.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:29.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.404][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:29.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:29.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:29.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.404][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:29.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:29.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:29.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.420][biodb$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2022-04-12 16:25:29.420][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2022-04-12 16:25:29.420][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:29.420][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-04-12 16:25:29.420][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:29.420][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:29.420][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:29.420][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:29.420][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:29.420][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2022-04-12 16:25:29.420][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-04-12 16:25:29.420][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:29.435][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:29.435][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2022-04-12 16:25:29.435][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:29.435][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2022-04-12 16:25:29.435][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2022-04-12 16:25:29.435][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2022-04-12 16:25:29.435][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2022-04-12 16:25:29.435][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2022-04-12 16:25:29.435][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2022-04-12 16:25:29.435][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2022-04-12 16:25:29.435][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2022-04-12 16:25:29.435][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2022-04-12 16:25:29.435][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2022-04-12 16:25:29.435][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2022-04-12 16:25:29.435][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:29.435][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 16:25:29.435][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 16:25:29.435][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 16:25:29.435][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-04-12 16:25:29.435][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:29.435][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:29.435][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:29.435][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:29.435][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:29.435][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:29.451][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-12 16:25:29.451][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2022-04-12 16:25:29.451][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:29.451][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:29.451][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:29.451][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2022-04-12 16:25:29.451][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2022-04-12 16:25:29.451][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-12 16:25:29.451][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-12 16:25:29.451][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2022-04-12 16:25:29.451][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-12 16:25:29.451][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-12 16:25:29.451][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-12 16:25:29.466][super$initialize] Initialize connector chebi.
biodb.DEBUG[2022-04-12 16:25:29.466][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2022-04-12 16:25:29.466][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2022-04-12 16:25:29.466][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2022-04-12 16:25:29.466][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-04-12 16:25:29.466][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-04-12 16:25:29.466][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2022-04-12 16:25:29.466][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2022-04-12 16:25:29.466][biodb::testThat]
biodb.INFO [2022-04-12 16:25:29.466][biodb::testThat] Running test function test.chebi.encoding.issue.in.xml (" ChEBI encoding issue in XML is handled. ").
biodb.INFO [2022-04-12 16:25:29.482][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:29.482][biodb::testThat]
biodb.DEBUG[2022-04-12 16:25:29.482][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2022-04-12 16:25:29.482][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:29.482][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2022-04-12 16:25:29.482][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:29.498][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2022-04-12 16:25:29.498][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:29.498][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:29.498][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2022-04-12 16:25:29.498][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:29.498][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.DEBUG[2022-04-12 16:25:29.513][private$loadEntries] Creating entries from ids [1]: "2571".
biodb.DEBUG[2022-04-12 16:25:29.513][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:25:29.513][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2571".
biodb.TRACE[2022-04-12 16:25:29.513][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-04-12 16:25:29.513][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-04-12 16:25:29.513][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:25:29.513][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-12 16:25:29.513][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-04-12 16:25:29.513][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-04-12 16:25:29.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:29.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:29.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:29.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:29.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:29.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:29.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:29.529][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2571".
biodb.DEBUG[2022-04-12 16:25:29.529][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-04-12 16:25:29.529][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-04-12 16:25:29.529][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2571".
biodb.TRACE[2022-04-12 16:25:30.091][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2571).
biodb.DEBUG[2022-04-12 16:25:30.966][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-04-12 16:25:31.013][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52df2611aa7f9f4c531cce8ac62e2fa0.content"
biodb.TRACE[2022-04-12 16:25:31.076][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52df2611aa7f9f4c531cce8ac62e2fa0.request"
biodb.TRACE[2022-04-12 16:25:31.138][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2571.xml"
biodb.DEBUG[2022-04-12 16:25:31.170][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-04-12 16:25:31.201][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:25:31.201][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:25:31.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:31.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:31.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:31.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:31.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:31.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:31.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:31.232][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:31.232][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:31.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:31.232][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:31.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:31.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:31.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:31.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:31.263][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:31.263][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:31.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:31.263][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:31.263][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:31.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:31.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:31.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:31.295][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:31.295][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:31.295][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:31.295][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:31.295][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:31.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:31.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:31.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:31.326][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:31.326][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:31.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:31.326][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:31.326][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:31.326][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:31.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:31.326][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:31.326][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:31.341][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:31.341][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:31.341][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:31.341][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:31.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:31.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:31.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:31.373][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:31.373][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:31.373][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:31.373][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:31.373][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:31.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:31.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:31.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:31.404][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:31.404][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:31.404][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:31.404][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:31.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:31.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:31.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:31.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:31.420][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:31.435][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:31.435][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:31.435][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:31.435][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:31.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:31.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:31.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:31.451][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:31.451][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:31.451][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:31.451][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:31.466][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:31.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:31.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:31.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:31.482][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:31.482][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:31.482][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:31.482][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:31.482][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:31.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:31.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:31.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:31.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:31.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:31.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:31.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:31.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:31.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:31.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:31.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:31.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:31.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:31.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:31.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:31.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:31.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:31.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:31.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:31.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:31.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:31.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:31.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:31.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:31.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:31.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:31.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:31.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:31.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:31.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:31.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:31.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:31.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:31.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:31.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:31.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:31.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:31.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:31.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:31.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:31.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:31.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:31.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:31.576][self$createEntryFromContent] Accession numbers: 2571.
biodb.INFO [2022-04-12 16:25:31.576][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-04-12 16:25:31.576][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2022-04-12 16:25:31.576][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2022-04-12 16:25:31.591][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-04-12 16:25:31.591][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:31.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:31.591][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:31.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:31.591][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:31.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 355 ]
>
> proc.time()
user system elapsed
39.06 1.29 104.95
|
biodbChebi.Rcheck/tests_x64/testthat.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2022-04-12 16:25:35.154][biodb::testContext]
biodb.INFO [2022-04-12 16:25:35.154][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 16:25:35.154][biodb::testContext] Test context - Generic tests
biodb.INFO [2022-04-12 16:25:35.154][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 16:25:35.154][biodb::testContext]
biodb.INFO [2022-04-12 16:25:35.185][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-04-12 16:25:35.185][self$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-04-12 16:25:35.201][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 16:25:35.201][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-04-12 16:25:35.201][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-04-12 16:25:35.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.201][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-04-12 16:25:35.232][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-04-12 16:25:35.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.232][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-04-12 16:25:35.232][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-04-12 16:25:35.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.248][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-04-12 16:25:35.248][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-04-12 16:25:35.248][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-04-12 16:25:35.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.248][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-04-12 16:25:35.248][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-04-12 16:25:35.248][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-04-12 16:25:35.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.263][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-04-12 16:25:35.263][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-04-12 16:25:35.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.263][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-04-12 16:25:35.263][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-04-12 16:25:35.263][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-04-12 16:25:35.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.279][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-04-12 16:25:35.279][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-04-12 16:25:35.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.295][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-04-12 16:25:35.295][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-04-12 16:25:35.295][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-04-12 16:25:35.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.295][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-04-12 16:25:35.295][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-04-12 16:25:35.295][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-04-12 16:25:35.295][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-04-12 16:25:35.310][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-04-12 16:25:35.310][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-04-12 16:25:35.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.310][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-04-12 16:25:35.310][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-04-12 16:25:35.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.310][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-04-12 16:25:35.310][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-04-12 16:25:35.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.326][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-04-12 16:25:35.326][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-04-12 16:25:35.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.326][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-04-12 16:25:35.326][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-04-12 16:25:35.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.326][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-04-12 16:25:35.341][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-04-12 16:25:35.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.341][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-04-12 16:25:35.341][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-04-12 16:25:35.341][self$set] Set key svn.binary.path to "C:\PROGRA~1\TORTOI~1\bin\svn.exe".
biodb.DEBUG[2022-04-12 16:25:35.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.341][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-04-12 16:25:35.357][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-04-12 16:25:35.357][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-04-12 16:25:35.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.357][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-04-12 16:25:35.404][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:35.420][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-04-12 16:25:35.420][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:35.420][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:35.420][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:35.420][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:35.420][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:35.420][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 16:25:35.435][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 16:25:35.435][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:35.435][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:35.435][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-04-12 16:25:35.435][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:35.435][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:35.435][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:35.435][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 16:25:35.435][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 16:25:35.435][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 16:25:35.435][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 16:25:35.435][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 16:25:35.435][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 16:25:35.435][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:35.435][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:35.435][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:35.451][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:35.451][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:35.451][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:35.451][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:35.451][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:35.451][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:35.451][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:35.451][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:35.451][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-04-12 16:25:35.451][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:35.451][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 16:25:35.466][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:35.466][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:35.466][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:35.466][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:35.466][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:35.466][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 16:25:35.466][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 16:25:35.466][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:35.466][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:35.466][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-04-12 16:25:35.466][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:35.482][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:35.482][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:35.482][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 16:25:35.482][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 16:25:35.482][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 16:25:35.482][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 16:25:35.482][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 16:25:35.482][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 16:25:35.482][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:35.482][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:35.482][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:35.482][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:35.482][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:35.482][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:35.482][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:35.482][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:35.498][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:35.498][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:35.498][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:35.498][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-04-12 16:25:35.498][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:35.498][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-04-12 16:25:35.498][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:35.498][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:35.498][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:35.498][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:35.498][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:35.513][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 16:25:35.513][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 16:25:35.513][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:35.513][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:35.513][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-04-12 16:25:35.513][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:35.513][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:35.513][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:35.513][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:35.513][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 16:25:35.513][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:35.513][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:35.529][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:35.529][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:35.529][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:35.529][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:35.529][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:35.529][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:35.529][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:35.529][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:35.529][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:35.529][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-04-12 16:25:35.545][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:35.545][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 16:25:35.545][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:35.545][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:35.545][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:35.545][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:35.545][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:35.545][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 16:25:35.560][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 16:25:35.560][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:35.560][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:35.560][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-04-12 16:25:35.560][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:35.560][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:35.560][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:35.560][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:35.560][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 16:25:35.560][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:35.560][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:35.560][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:35.576][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:35.576][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:35.576][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:35.576][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:35.576][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:35.576][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:35.576][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:35.576][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:35.576][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 16:25:35.576][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.591][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.591][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.591][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.623][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.623][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.623][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.638][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.638][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.638][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.670][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.670][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.670][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-04-12 16:25:35.670][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-04-12 16:25:35.685][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-04-12 16:25:35.685][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-04-12 16:25:35.685][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-12 16:25:35.685][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-04-12 16:25:35.685][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-04-12 16:25:35.685][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-04-12 16:25:35.685][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-04-12 16:25:35.685][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-04-12 16:25:35.685][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-12 16:25:35.685][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-04-12 16:25:35.701][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-04-12 16:25:35.701][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-04-12 16:25:35.701][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-04-12 16:25:35.701][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-04-12 16:25:35.701][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-04-12 16:25:35.701][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-04-12 16:25:35.701][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-12 16:25:35.701][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-04-12 16:25:35.701][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-04-12 16:25:35.701][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-04-12 16:25:35.716][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-04-12 16:25:35.716][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-04-12 16:25:35.716][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-04-12 16:25:35.716][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-04-12 16:25:35.716][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-04-12 16:25:35.716][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-04-12 16:25:35.716][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-04-12 16:25:35.716][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-04-12 16:25:35.716][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-04-12 16:25:35.716][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-04-12 16:25:35.732][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-04-12 16:25:35.732][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-04-12 16:25:35.732][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-04-12 16:25:35.732][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-04-12 16:25:35.732][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-04-12 16:25:35.732][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-04-12 16:25:35.732][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-04-12 16:25:35.732][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-04-12 16:25:35.732][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-04-12 16:25:35.732][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-04-12 16:25:35.732][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-04-12 16:25:35.748][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-04-12 16:25:35.748][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-04-12 16:25:35.748][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-04-12 16:25:35.748][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-04-12 16:25:35.748][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-04-12 16:25:35.748][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-04-12 16:25:35.748][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-04-12 16:25:35.748][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-04-12 16:25:35.748][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-04-12 16:25:35.748][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-04-12 16:25:35.763][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-04-12 16:25:35.763][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-04-12 16:25:35.763][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-04-12 16:25:35.763][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-04-12 16:25:35.763][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-04-12 16:25:35.763][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-04-12 16:25:35.763][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-04-12 16:25:35.763][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-04-12 16:25:35.763][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-04-12 16:25:35.763][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-04-12 16:25:35.763][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-04-12 16:25:35.779][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-04-12 16:25:35.779][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-04-12 16:25:35.779][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-12 16:25:35.779][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-12 16:25:35.779][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-04-12 16:25:35.779][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-04-12 16:25:35.779][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-04-12 16:25:35.779][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-04-12 16:25:35.795][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-04-12 16:25:35.795][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-04-12 16:25:35.795][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-04-12 16:25:35.795][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-04-12 16:25:35.795][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-04-12 16:25:35.795][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-04-12 16:25:35.795][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-04-12 16:25:35.795][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-04-12 16:25:35.795][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-04-12 16:25:35.795][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-04-12 16:25:35.810][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-04-12 16:25:35.810][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-04-12 16:25:35.810][initialize] This is biodb version 1.2.2.
biodb.DEBUG[2022-04-12 16:25:35.826][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 16:25:35.826][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.826][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.826][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:35.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:35.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:35.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:35.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:35.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:35.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:35.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:35.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.857][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:35.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:35.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.857][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:35.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:35.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.873][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:35.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:35.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.873][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:35.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:35.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:35.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:35.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:35.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:35.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:35.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:35.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:35.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:35.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:35.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:35.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.920][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:35.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:35.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.920][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:35.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:35.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.935][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:35.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:35.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.935][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:35.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:35.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:35.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:35.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:35.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:35.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:35.951][biodb$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2022-04-12 16:25:35.951][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2022-04-12 16:25:35.951][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:35.951][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-04-12 16:25:35.966][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:35.966][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:35.966][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:35.966][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:35.966][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:35.966][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2022-04-12 16:25:35.966][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-04-12 16:25:35.966][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:35.966][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:35.966][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2022-04-12 16:25:35.966][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:35.966][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2022-04-12 16:25:35.966][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2022-04-12 16:25:35.966][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2022-04-12 16:25:35.966][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2022-04-12 16:25:35.966][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2022-04-12 16:25:35.966][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2022-04-12 16:25:35.966][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2022-04-12 16:25:35.966][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2022-04-12 16:25:35.966][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2022-04-12 16:25:35.966][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2022-04-12 16:25:35.966][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2022-04-12 16:25:35.966][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:35.966][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 16:25:35.966][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 16:25:35.966][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 16:25:35.982][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-04-12 16:25:35.982][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:35.982][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:35.982][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:35.982][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:35.982][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:35.982][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:35.982][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-12 16:25:35.982][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2022-04-12 16:25:35.982][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:35.982][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:35.982][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:35.982][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2022-04-12 16:25:35.982][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2022-04-12 16:25:35.998][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-12 16:25:35.998][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-12 16:25:35.998][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2022-04-12 16:25:35.998][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-12 16:25:35.998][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-12 16:25:35.998][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-12 16:25:36.029][super$initialize] Initialize connector chebi.
biodb.DEBUG[2022-04-12 16:25:36.029][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2022-04-12 16:25:36.029][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2022-04-12 16:25:36.029][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2022-04-12 16:25:36.045][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-04-12 16:25:36.045][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-04-12 16:25:36.045][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2022-04-12 16:25:36.045][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2022-04-12 16:25:36.076][biodb::testThat]
biodb.INFO [2022-04-12 16:25:36.076][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2022-04-12 16:25:36.076][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:36.091][biodb::testThat]
biodb.TRACE[2022-04-12 16:25:36.091][loadFileContents] Loaded 1 files from cache: [1]: "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2022-04-12 16:25:36.107][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:25:36.107][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:25:36.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:36.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:36.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:36.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:36.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:36.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:36.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:36.123][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:36.123][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:36.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.138][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:36.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:36.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.154][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:36.154][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:36.170][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.170][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.185][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:36.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:36.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.201][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:36.201][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:36.201][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.216][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.216][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:36.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:36.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.232][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:36.232][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:36.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.232][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.232][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:36.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:36.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.248][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:36.248][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:36.248][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.263][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:36.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:36.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.263][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:36.279][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:36.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.279][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.279][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:36.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:36.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.295][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:36.295][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:36.295][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.295][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.295][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:36.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:36.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.310][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:36.310][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:36.310][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.310][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:36.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:36.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.326][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:36.326][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:36.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.326][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.326][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:36.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:36.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.341][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:36.341][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:36.341][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.357][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.357][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:36.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:36.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.373][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:36.373][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:36.373][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.373][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.373][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:36.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:36.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:36.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:36.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:36.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:36.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:36.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:36.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:36.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:36.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:36.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:36.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:36.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:36.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:36.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:36.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:36.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:36.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:36.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:36.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:36.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:36.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:36.482][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2022-04-12 16:25:36.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:36.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:36.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:36.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:36.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.513][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:36.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:36.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.529][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:36.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:36.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:36.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:36.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:36.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:36.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.545][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 16:25:36.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 16:25:36.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.545][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 16:25:36.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 16:25:36.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.545][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 16:25:36.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 16:25:36.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.560][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 16:25:36.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 16:25:36.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:36.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:36.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:36.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:36.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:36.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:36.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:36.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:36.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:36.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:36.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:36.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:36.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:36.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:36.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:36.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:36.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:36.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:36.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:36.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:36.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:36.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:36.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:36.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:36.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:36.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:36.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:36.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:36.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.701][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:36.701][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:36.701][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.701][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:36.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:36.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:36.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:36.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:36.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:36.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:36.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:36.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.732][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:36.732][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:36.732][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.732][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:36.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:36.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.748][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:36.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:36.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.748][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:36.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:36.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.763][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:36.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:36.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.763][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:36.763][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:36.763][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.763][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.763][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:36.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:36.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.779][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:36.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:36.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.779][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:36.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:36.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.795][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:36.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:36.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.795][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:36.795][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:36.795][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.795][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.810][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:36.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:36.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:36.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:36.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:36.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:36.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:36.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:36.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.826][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:36.826][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:36.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.826][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:36.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:36.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:36.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:36.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:36.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:36.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:36.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:36.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.857][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:36.857][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:36.857][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.857][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:36.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:36.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.873][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:36.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:36.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.873][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:36.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:36.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.888][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:36.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:36.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.888][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:36.888][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:36.888][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.888][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.888][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:36.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:36.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.904][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-12 16:25:36.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:36.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.904][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-12 16:25:36.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:36.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.920][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-12 16:25:36.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:36.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.920][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-12 16:25:36.920][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:36.920][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.920][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.920][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-12 16:25:36.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:36.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.935][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:36.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:36.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.935][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:36.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:36.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.951][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:36.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:36.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.951][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:36.951][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:36.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.951][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.951][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:36.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:36.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.966][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:36.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:36.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.966][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:36.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:36.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.966][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:36.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:36.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.982][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:36.982][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:36.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.982][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.982][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:36.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:36.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:36.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:36.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:36.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:36.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:36.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:37.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.013][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:37.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:37.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.013][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:37.013][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:37.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.013][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.013][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:37.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:37.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.029][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:37.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:37.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.029][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:37.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:37.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.029][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:37.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:37.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.045][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:37.045][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:37.045][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.045][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:37.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:37.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.060][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:37.060][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:37.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.060][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.060][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:37.060][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:37.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.076][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.076][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:37.076][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:37.076][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.076][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.076][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:37.076][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:37.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.091][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.091][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:37.091][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:37.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.091][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.091][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:37.091][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:37.107][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.107][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.107][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:37.107][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:37.107][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.107][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.123][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:37.123][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:37.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.123][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.123][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-04-12 16:25:37.123][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:37.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.123][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.138][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:37.138][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:37.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.138][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.138][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:37.138][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:37.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.138][ef$get] fields variable is a list.
biodb.INFO [2022-04-12 16:25:37.154][biodb::testThat]
biodb.INFO [2022-04-12 16:25:37.154][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2022-04-12 16:25:37.154][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:37.154][biodb::testThat]
biodb.DEBUG[2022-04-12 16:25:37.170][private$loadEntries] Creating entries from ids [1]: "15440".
biodb.DEBUG[2022-04-12 16:25:37.170][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:25:37.185][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15440".
biodb.TRACE[2022-04-12 16:25:37.185][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:37.185][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml".
biodb.DEBUG[2022-04-12 16:25:37.185][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:25:37.232][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:25:37.232][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:25:37.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:37.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:37.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:37.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:37.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:37.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:37.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:37.248][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:37.248][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:37.248][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.248][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:37.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:37.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.279][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:37.279][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:37.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.279][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.279][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:37.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:37.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.295][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:37.295][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:37.295][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.295][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.295][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:37.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:37.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.310][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:37.310][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:37.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.326][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:37.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:37.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.326][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:37.341][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:37.341][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.341][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:37.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:37.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.357][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:37.357][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:37.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.357][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.357][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:37.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:37.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.373][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:37.373][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:37.373][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.373][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.373][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:37.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:37.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.388][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:37.388][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:37.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.388][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:37.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:37.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.404][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:37.404][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:37.404][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.404][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.404][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:37.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:37.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.420][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:37.420][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:37.420][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.420][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.420][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:37.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:37.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.435][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:37.435][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:37.435][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.435][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.435][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:37.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:37.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:37.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:37.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:37.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:37.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:37.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:37.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:37.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:37.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:37.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:37.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:37.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:37.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:37.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:37.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:37.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:37.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:37.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:37.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:37.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:37.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:37.513][self$createEntryFromContent] Accession numbers: 15440.
biodb.TRACE[2022-04-12 16:25:37.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-04-12 16:25:37.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-04-12 16:25:37.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-04-12 16:25:37.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-04-12 16:25:37.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-04-12 16:25:37.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-04-12 16:25:37.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-12 16:25:37.529][biodb::testThat]
biodb.INFO [2022-04-12 16:25:37.529][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2022-04-12 16:25:37.529][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:37.529][biodb::testThat]
biodb.TRACE[2022-04-12 16:25:37.529][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:37.529][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:37.529][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.529][ef$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:37.545][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2022-04-12 16:25:37.560][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:37.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:37.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.576][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:37.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:37.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.576][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:37.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:37.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:37.576][function(conn, opt)] With value "squalene".
biodb.DEBUG[2022-04-12 16:25:37.591][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2022-04-12 16:25:37.607][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:37.623][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2022-04-12 16:25:37.623][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:37.623][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2022-04-12 16:25:37.654][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:37.654][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:37.654][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-12 16:25:37.654][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:37.654][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-04-12 16:25:37.670][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2022-04-12 16:25:37.670][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:37.670][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:37.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.685][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.685][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:37.685][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:37.685][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.685][ef$get] fields variable is a list.
biodb.INFO [2022-04-12 16:25:37.685][biodb::testThat]
biodb.INFO [2022-04-12 16:25:37.685][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2022-04-12 16:25:37.685][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:37.685][biodb::testThat]
biodb.TRACE[2022-04-12 16:25:37.701][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:37.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:37.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.701][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:37.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:37.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.716][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:37.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:37.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:37.779][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:37.779][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:37.779][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-12 16:25:37.779][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:37.779][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2022-04-12 16:25:37.795][biodb::testThat]
biodb.INFO [2022-04-12 16:25:37.810][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2022-04-12 16:25:37.810][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:37.810][biodb::testThat]
biodb.TRACE[2022-04-12 16:25:37.841][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:37.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:37.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.841][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:37.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:37.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:37.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:37.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:37.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:37.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:37.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:37.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:37.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:37.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.873][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 16:25:37.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 16:25:37.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.873][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 16:25:37.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 16:25:37.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.873][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 16:25:37.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 16:25:37.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.888][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 16:25:37.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 16:25:37.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:37.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:37.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:37.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:37.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:37.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:37.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:37.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:37.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:37.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:37.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:37.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:37.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.951][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 16:25:37.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 16:25:37.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.951][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-04-12 16:25:37.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-04-12 16:25:37.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.951][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-04-12 16:25:37.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-04-12 16:25:37.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:37.966][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-04-12 16:25:37.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-04-12 16:25:37.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:37.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-12 16:25:37.966][biodb::testThat]
biodb.INFO [2022-04-12 16:25:37.966][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2022-04-12 16:25:37.966][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:37.966][biodb::testThat]
biodb.INFO [2022-04-12 16:25:37.966][biodb::testThat]
biodb.INFO [2022-04-12 16:25:37.982][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2022-04-12 16:25:37.982][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:37.982][biodb::testThat]
biodb.INFO [2022-04-12 16:25:37.982][biodb::testThat]
biodb.INFO [2022-04-12 16:25:37.982][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2022-04-12 16:25:37.982][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:37.982][biodb::testThat]
biodb.DEBUG[2022-04-12 16:25:37.982][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2022-04-12 16:25:39.451][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2022-04-12 16:25:40.654][biodb::testThat]
biodb.INFO [2022-04-12 16:25:40.670][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2022-04-12 16:25:40.670][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:40.670][biodb::testThat]
biodb.DEBUG[2022-04-12 16:25:41.263][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.INFO [2022-04-12 16:25:41.810][biodb::testThat]
biodb.INFO [2022-04-12 16:25:41.826][biodb::testThat] Running test function test.searchCompound (" We can search for a compound ").
biodb.INFO [2022-04-12 16:25:41.826][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:41.826][biodb::testThat]
biodb.TRACE[2022-04-12 16:25:41.841][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:41.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:41.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:41.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:41.857][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:41.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:41.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:41.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:41.873][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:41.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:41.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:41.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:41.982][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:41.982][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:41.982][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-12 16:25:41.982][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:41.998][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-04-12 16:25:42.013][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:42.029][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:42.029][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-12 16:25:42.029][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:42.029][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2022-04-12 16:25:42.060][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-12 16:25:42.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-12 16:25:42.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:42.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:42.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:42.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:42.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:42.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:42.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:42.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:42.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:42.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:42.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:42.185][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:42.201][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:42.201][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-12 16:25:42.201][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:42.201][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-12 16:25:42.217][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:42.217][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:42.217][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-12 16:25:42.217][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:42.217][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-12 16:25:42.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:42.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:42.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:42.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:42.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:42.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:42.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:42.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:42.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:42.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:42.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:42.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:42.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:42.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:42.279][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:42.295][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:42.295][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-12 16:25:42.295][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:42.295][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-12 16:25:42.342][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:42.357][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:42.357][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-12 16:25:42.357][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:42.357][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-04-12 16:25:42.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:42.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:42.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:42.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:42.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:42.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:42.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:42.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:42.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:42.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:42.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:42.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:42.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:42.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:42.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:42.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:42.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:42.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:42.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:42.451][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:42.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:42.451][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2022-04-12 16:25:42.513][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:25:42.513][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2022-04-12 16:25:42.513][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:42.529][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml".
biodb.DEBUG[2022-04-12 16:25:42.529][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:25:42.560][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:25:42.560][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:25:42.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:42.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:42.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:42.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:42.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:42.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:42.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:42.576][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:42.576][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:42.576][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.592][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:42.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:42.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.607][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:42.607][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:42.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.607][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.607][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:42.607][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:42.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.607][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.607][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:42.623][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:42.623][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.623][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.623][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:42.623][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:42.623][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.623][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.623][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:42.623][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:42.623][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.638][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.638][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:42.638][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:42.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.638][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.638][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:42.638][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:42.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.638][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.654][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:42.654][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:42.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.654][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.654][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:42.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:42.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.670][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:42.670][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:42.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.670][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.670][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:42.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:42.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.685][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:42.685][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:42.685][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.685][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:42.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:42.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:42.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:42.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:42.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:42.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:42.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:42.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:42.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:42.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:42.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:42.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:42.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:42.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:42.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:42.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:42.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:42.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:42.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:42.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:42.763][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2022-04-12 16:25:42.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:42.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:42.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:42.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:42.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:42.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:42.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:42.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:42.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:42.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:42.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:42.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:42.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:42.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:42.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:42.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:42.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:42.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:42.826][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2022-04-12 16:25:42.826][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:25:42.826][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2022-04-12 16:25:42.826][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:42.826][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml".
biodb.DEBUG[2022-04-12 16:25:42.842][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:25:42.857][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:25:42.857][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:25:42.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:42.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:42.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:42.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:42.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:42.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:42.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:42.873][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:42.873][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:42.873][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.888][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:42.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:42.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.888][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:42.888][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:42.904][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.904][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.904][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:42.904][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:42.904][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.904][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.904][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:42.904][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:42.904][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.904][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.920][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:42.920][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:42.920][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.920][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.920][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:42.920][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:42.920][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.920][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.920][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:42.920][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:42.920][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.935][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.935][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:42.935][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:42.935][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.935][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.935][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:42.935][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:42.935][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.935][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.935][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:42.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:42.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.951][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:42.951][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:42.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.951][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.967][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:42.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:42.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.982][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:42.982][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:42.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.982][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:42.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:42.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:42.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:42.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:42.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:42.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:42.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:42.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:42.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:42.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:42.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:43.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:43.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:43.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:43.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:43.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:43.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:43.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:43.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:43.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:43.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:43.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:43.045][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2022-04-12 16:25:43.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:43.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:43.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:43.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:43.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:43.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:43.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:43.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:43.076][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2022-04-12 16:25:43.076][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:25:43.092][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2022-04-12 16:25:43.092][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:43.092][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml".
biodb.DEBUG[2022-04-12 16:25:43.092][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:25:43.123][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:25:43.123][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:25:43.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:43.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:43.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:43.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:43.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:43.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:43.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:43.138][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:43.138][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:43.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.138][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:43.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:43.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.154][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:43.154][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:43.154][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.154][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.154][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:43.154][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:43.170][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.170][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.170][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:43.170][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:43.170][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.170][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.170][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:43.170][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:43.170][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.170][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.185][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:43.185][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:43.185][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.185][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.185][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:43.185][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.185][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.185][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.185][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:43.185][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:43.185][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.201][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.201][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:43.201][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:43.201][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.201][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.201][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:43.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:43.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.216][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:43.216][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:43.216][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.216][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.216][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:43.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:43.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.232][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:43.232][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:43.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.232][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:43.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:43.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:43.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:43.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:43.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:43.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:43.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:43.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:43.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:43.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:43.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:43.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:43.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:43.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:43.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:43.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:43.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:43.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:43.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:43.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:43.295][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2022-04-12 16:25:43.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:43.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:43.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:43.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:43.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:43.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:43.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:43.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:43.341][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2022-04-12 16:25:43.341][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:25:43.341][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2022-04-12 16:25:43.357][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:43.357][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml".
biodb.DEBUG[2022-04-12 16:25:43.357][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:25:43.373][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:25:43.373][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:25:43.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:43.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:43.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:43.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:43.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:43.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:43.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:43.388][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:43.388][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:43.404][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.404][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:43.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:43.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.404][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:43.420][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:43.420][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.420][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.420][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:43.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:43.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.435][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:43.435][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:43.435][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.435][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.435][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:43.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:43.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.451][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:43.451][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:43.451][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.451][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:43.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:43.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.467][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:43.467][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:43.467][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.467][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:43.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:43.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.482][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:43.482][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:43.482][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.482][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.482][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:43.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:43.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.498][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:43.498][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.498][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.498][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.498][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:43.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.513][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:43.513][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:43.529][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.529][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:43.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:43.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.545][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:43.545][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:43.545][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.545][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.545][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:43.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:43.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.560][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:43.560][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:43.560][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.560][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.560][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:43.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:43.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.576][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:43.576][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:43.576][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.576][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.576][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:43.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:43.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:43.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:43.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:43.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:43.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:43.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:43.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:43.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:43.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:43.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:43.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:43.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:43.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:43.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:43.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:43.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:43.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:43.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:43.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:43.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:43.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:43.654][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2022-04-12 16:25:43.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:43.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:43.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:43.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:43.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:43.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:43.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:43.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:43.685][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2022-04-12 16:25:43.685][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:25:43.685][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2022-04-12 16:25:43.685][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:43.685][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml".
biodb.DEBUG[2022-04-12 16:25:43.685][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:25:43.717][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:25:43.717][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:25:43.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:43.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:43.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:43.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:43.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:43.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:43.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:43.732][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:43.732][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:43.732][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.732][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:43.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:43.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.748][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:43.748][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:43.748][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.748][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.748][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:43.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:43.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.763][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:43.763][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:43.763][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.763][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.763][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:43.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:43.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.779][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:43.779][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:43.779][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.779][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.779][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:43.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:43.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.795][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:43.795][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:43.795][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.795][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.795][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:43.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:43.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.810][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:43.810][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:43.810][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.810][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.810][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:43.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:43.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.826][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:43.826][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.826][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.826][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:43.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.842][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:43.842][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:43.842][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.842][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:43.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:43.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.857][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:43.857][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:43.857][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.857][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.873][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:43.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:43.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.873][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:43.888][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:43.888][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.888][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.888][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:43.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:43.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.888][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:43.888][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:43.904][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.904][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.904][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:43.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:43.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:43.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:43.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:43.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:43.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:43.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:43.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:43.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:43.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:43.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:43.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:43.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:43.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:43.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:43.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:43.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:43.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:43.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:43.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:43.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:43.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:43.967][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2022-04-12 16:25:43.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:43.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:43.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:43.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:43.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:43.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:43.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:43.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:43.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:43.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:43.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:43.982][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2022-04-12 16:25:43.982][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:25:43.982][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2022-04-12 16:25:43.982][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:43.982][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml".
biodb.DEBUG[2022-04-12 16:25:43.982][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:25:44.013][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:25:44.013][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:25:44.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:44.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:44.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:44.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:44.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:44.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:44.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:44.045][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:44.045][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:44.045][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.045][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:44.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:44.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.060][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:44.060][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:44.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.060][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.060][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:44.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:44.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.060][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:44.076][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:44.076][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.076][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.076][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:44.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:44.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.076][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:44.076][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:44.076][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.092][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:44.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:44.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.092][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:44.092][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:44.092][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.092][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.107][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:44.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:44.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.107][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:44.107][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:44.107][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.107][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.107][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:44.123][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:44.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.123][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.123][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:44.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:44.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.123][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:44.123][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:44.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.138][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:44.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:44.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.138][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:44.138][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:44.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.138][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.154][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:44.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:44.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.154][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:44.154][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:44.154][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.154][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.154][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:44.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:44.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.170][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:44.170][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:44.170][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.170][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.170][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:44.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:44.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:44.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:44.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:44.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:44.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:44.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:44.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:44.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:44.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:44.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:44.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:44.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:44.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:44.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:44.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:44.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:44.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:44.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:44.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:44.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:44.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:44.232][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2022-04-12 16:25:44.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:44.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:44.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:44.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:44.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:44.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:44.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:44.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:44.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:44.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:44.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:44.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:44.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:44.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:44.263][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2022-04-12 16:25:44.263][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:25:44.263][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2022-04-12 16:25:44.263][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:44.263][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml".
biodb.DEBUG[2022-04-12 16:25:44.263][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:25:44.295][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:25:44.295][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:25:44.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:44.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:44.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:44.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:44.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:44.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:44.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:44.310][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:44.310][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:44.310][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.310][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:44.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:44.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.326][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:44.326][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:44.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.326][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.326][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:44.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:44.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.326][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:44.342][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:44.342][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.342][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.342][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:44.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:44.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.357][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:44.357][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:44.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.357][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:44.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:44.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.357][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:44.357][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:44.373][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.373][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.373][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:44.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:44.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.373][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:44.373][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:44.373][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.388][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.388][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:44.388][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:44.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.388][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.388][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:44.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:44.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.388][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:44.404][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:44.404][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.404][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:44.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:44.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.404][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:44.404][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:44.420][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.420][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.420][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:44.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:44.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.420][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:44.420][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:44.420][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.435][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.435][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:44.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:44.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.435][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:44.435][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:44.435][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.435][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:44.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:44.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:44.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:44.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:44.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:44.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:44.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:44.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:44.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:44.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:44.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:44.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:44.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:44.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:44.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:44.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:44.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:44.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:44.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:44.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:44.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:44.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:44.513][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2022-04-12 16:25:44.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:44.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:44.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:44.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:44.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:44.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:44.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:44.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:44.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:44.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:44.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:44.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:44.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:44.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:44.529][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2022-04-12 16:25:44.529][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:25:44.529][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2022-04-12 16:25:44.529][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:44.545][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml".
biodb.DEBUG[2022-04-12 16:25:44.545][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:25:44.560][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:25:44.560][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:25:44.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:44.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:44.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:44.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:44.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:44.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:44.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:44.576][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:44.576][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:44.576][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.576][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:44.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:44.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.592][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:44.592][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:44.592][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.592][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.592][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:44.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:44.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.607][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:44.607][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:44.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.607][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.607][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:44.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:44.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.623][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:44.623][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:44.623][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.623][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:44.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:44.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.638][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:44.638][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:44.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.638][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:44.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:44.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.638][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:44.654][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:44.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.654][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.654][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:44.654][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:44.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.654][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.654][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:44.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:44.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.670][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:44.670][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:44.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.670][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:44.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:44.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.685][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:44.685][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:44.685][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.685][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.685][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:44.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:44.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.701][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:44.701][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:44.701][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.701][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.701][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:44.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:44.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.717][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:44.717][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:44.717][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.717][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.717][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:44.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:44.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:44.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:44.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:44.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:44.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:44.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:44.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:44.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:44.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:44.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:44.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:44.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:44.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:44.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:44.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:44.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:44.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:44.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:44.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:44.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:44.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:44.779][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2022-04-12 16:25:44.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:44.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:44.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:44.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:44.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:44.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:44.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:44.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:44.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:44.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:44.795][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:44.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:44.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:44.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:44.795][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2022-04-12 16:25:44.795][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:25:44.810][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2022-04-12 16:25:44.810][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:44.810][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml".
biodb.DEBUG[2022-04-12 16:25:44.810][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:25:44.826][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:25:44.842][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:25:44.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:44.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:44.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:44.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:44.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:44.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:44.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:44.842][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:44.842][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:44.842][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.842][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:44.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:44.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.857][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:44.857][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:44.857][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.857][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.857][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:44.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:44.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.873][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:44.873][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:44.873][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.873][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.873][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:44.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:44.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.888][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:44.888][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:44.888][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.888][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:44.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:44.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.904][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:44.904][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:44.904][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.904][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.904][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:44.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:44.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.920][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:44.920][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:44.920][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.920][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.920][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:44.920][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:44.920][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.920][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.920][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:44.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:44.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.935][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:44.935][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:44.935][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.935][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:44.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:44.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.951][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:44.951][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:44.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.951][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.951][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:44.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:44.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.967][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:44.967][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:44.967][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.967][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.967][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:44.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:44.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.982][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:44.982][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:44.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.982][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.982][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:44.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:44.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:44.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:44.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:44.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:44.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:44.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:44.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:44.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:45.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:45.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:45.045][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2022-04-12 16:25:45.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:45.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:45.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:45.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:45.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:45.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:45.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:45.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:45.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:45.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:45.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:45.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:45.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:45.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:45.076][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2022-04-12 16:25:45.076][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:25:45.076][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2022-04-12 16:25:45.076][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:45.076][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml".
biodb.DEBUG[2022-04-12 16:25:45.076][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:25:45.092][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:25:45.107][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:25:45.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:45.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:45.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:45.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:45.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:45.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:45.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:45.107][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.107][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.107][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.123][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.138][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:45.138][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:45.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.138][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.138][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:45.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:45.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.154][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:45.154][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:45.154][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.154][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.154][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:45.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:45.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.170][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:45.170][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:45.170][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.170][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.170][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:45.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:45.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.185][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:45.185][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:45.185][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.185][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:45.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:45.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.201][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:45.201][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:45.201][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.201][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.201][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:45.201][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:45.201][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.201][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.201][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:45.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:45.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.217][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:45.217][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:45.217][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.217][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:45.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:45.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.232][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:45.232][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:45.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.232][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.232][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:45.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:45.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.248][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:45.248][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:45.248][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.248][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.248][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:45.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:45.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.263][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:45.263][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:45.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.263][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.263][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:45.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:45.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:45.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:45.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:45.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:45.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:45.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:45.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:45.326][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2022-04-12 16:25:45.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:45.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:45.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:45.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:45.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:45.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:45.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:45.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:45.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:45.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:45.342][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:45.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:45.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:45.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:45.357][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2022-04-12 16:25:45.357][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:25:45.357][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2022-04-12 16:25:45.357][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:45.357][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml".
biodb.DEBUG[2022-04-12 16:25:45.357][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:25:45.373][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:25:45.373][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:25:45.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:45.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:45.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:45.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:45.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:45.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:45.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:45.388][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.388][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.388][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.404][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:45.404][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:45.404][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.404][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.404][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:45.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:45.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.420][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:45.420][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:45.420][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.420][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.420][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:45.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:45.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.435][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:45.435][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:45.435][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.435][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.435][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:45.435][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:45.435][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.451][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.451][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:45.451][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:45.451][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.451][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.451][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:45.451][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:45.451][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.451][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.451][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:45.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:45.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.467][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:45.467][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:45.467][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.467][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:45.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:45.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.482][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:45.482][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:45.482][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.482][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.482][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:45.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:45.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.498][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:45.498][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:45.498][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.498][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.498][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:45.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:45.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.498][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:45.498][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:45.513][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.513][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:45.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:45.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:45.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:45.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:45.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:45.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:45.560][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2022-04-12 16:25:45.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:45.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:45.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:45.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:45.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:45.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:45.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:45.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:45.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:45.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:45.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:45.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:45.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:45.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:45.576][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2022-04-12 16:25:45.592][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:25:45.592][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2022-04-12 16:25:45.592][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:45.592][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml".
biodb.DEBUG[2022-04-12 16:25:45.592][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:25:45.607][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:25:45.607][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:25:45.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:45.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:45.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:45.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:45.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:45.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:45.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:45.623][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.623][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.623][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.623][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.638][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:45.638][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:45.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.638][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.638][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:45.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:45.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.654][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:45.654][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:45.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.654][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.654][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:45.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:45.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.654][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:45.670][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:45.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.670][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.670][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:45.670][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:45.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.670][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.670][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:45.670][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:45.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.670][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.670][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:45.670][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:45.685][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.685][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.685][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:45.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:45.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.685][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:45.685][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:45.685][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.685][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:45.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:45.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.701][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:45.701][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:45.701][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.701][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.701][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:45.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:45.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.717][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:45.717][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:45.717][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.717][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.717][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:45.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:45.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.732][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:45.732][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:45.732][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.732][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:45.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:45.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:45.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:45.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:45.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:45.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:45.779][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2022-04-12 16:25:45.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:45.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:45.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:45.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:45.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:45.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:45.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:45.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:45.795][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:45.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:45.795][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:45.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:45.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:45.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:45.810][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2022-04-12 16:25:45.810][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:25:45.810][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2022-04-12 16:25:45.810][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:45.810][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml".
biodb.DEBUG[2022-04-12 16:25:45.810][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:25:45.826][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:25:45.826][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:25:45.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:45.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:45.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:45.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:45.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:45.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:45.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:45.842][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.842][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.842][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.842][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.857][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:45.857][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:45.857][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.857][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.857][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:45.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:45.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.873][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:45.873][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:45.873][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.873][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.873][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:45.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:45.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.888][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:45.888][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:45.888][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.888][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:45.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:45.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.904][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:45.904][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:45.904][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.904][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.904][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:45.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:45.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.904][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:45.904][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:45.920][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.920][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.920][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:45.920][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:45.920][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.920][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.920][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:45.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:45.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.935][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:45.935][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:45.935][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.935][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:45.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:45.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.935][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:45.951][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:45.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.951][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.951][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:45.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:45.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.951][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:45.951][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:45.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.967][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.967][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:45.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:45.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.967][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:45.967][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:45.967][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.967][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.982][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:45.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:45.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:45.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:45.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:45.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:45.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:45.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:45.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:45.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:45.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:45.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:45.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:46.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:46.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:46.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:46.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:46.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:46.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:46.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:46.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:46.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:46.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:46.045][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2022-04-12 16:25:46.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:46.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:46.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:46.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:46.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:46.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:46.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:46.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:46.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:46.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:46.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:46.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:46.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:46.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:46.060][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2022-04-12 16:25:46.060][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:25:46.060][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2022-04-12 16:25:46.060][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:46.076][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml".
biodb.DEBUG[2022-04-12 16:25:46.076][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:25:46.092][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:25:46.092][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:25:46.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:46.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:46.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:46.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:46.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:46.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:46.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:46.107][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:46.107][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:46.107][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.107][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:46.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:46.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.123][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:46.123][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:46.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.123][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.123][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:46.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:46.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.138][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:46.138][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:46.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.138][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.138][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:46.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:46.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.138][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:46.138][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:46.154][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.154][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:46.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:46.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.154][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:46.170][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:46.170][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.170][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.170][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:46.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:46.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.170][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:46.170][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:46.185][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.185][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.185][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:46.185][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:46.185][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.185][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.185][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:46.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:46.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.201][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:46.201][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:46.201][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.201][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:46.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:46.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.217][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:46.217][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:46.217][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.217][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.217][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:46.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:46.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.217][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:46.217][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:46.217][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.232][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.232][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:46.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:46.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.232][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:46.232][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:46.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.232][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.248][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:46.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:46.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:46.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:46.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:46.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:46.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:46.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:46.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:46.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:46.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:46.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:46.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:46.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:46.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:46.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:46.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:46.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:46.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:46.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:46.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:46.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:46.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:46.295][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2022-04-12 16:25:46.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:46.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:46.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:46.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:46.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:46.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:46.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:46.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:46.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:46.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:46.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:46.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:46.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:46.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:46.326][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2022-04-12 16:25:46.326][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:25:46.326][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2022-04-12 16:25:46.326][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:46.326][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml".
biodb.DEBUG[2022-04-12 16:25:46.326][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:25:46.342][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:25:46.357][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:25:46.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:46.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:46.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:46.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:46.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:46.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:46.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:46.357][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:46.357][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:46.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.373][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:46.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:46.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.373][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:46.373][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:46.373][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.373][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.373][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:46.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:46.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.388][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:46.388][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:46.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.388][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.388][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:46.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:46.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.404][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:46.404][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:46.404][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.404][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:46.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:46.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.420][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:46.420][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:46.420][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.420][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.420][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:46.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:46.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.420][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:46.435][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:46.435][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.435][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.435][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:46.435][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:46.435][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.435][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.435][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:46.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:46.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.451][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:46.451][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:46.451][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.451][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:46.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:46.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.467][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:46.467][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:46.467][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.467][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.467][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:46.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:46.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.482][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:46.482][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:46.482][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.482][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.482][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:46.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:46.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.498][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:46.498][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:46.498][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.498][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.498][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:46.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:46.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:46.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:46.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:46.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:46.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:46.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:46.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:46.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:46.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:46.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:46.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:46.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:46.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:46.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:46.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:46.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:46.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:46.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:46.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:46.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:46.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:46.545][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2022-04-12 16:25:46.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:46.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:46.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:46.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:46.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:46.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:46.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:46.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:46.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:46.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:46.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:46.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:46.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:46.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:46.576][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2022-04-12 16:25:46.576][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:25:46.576][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2022-04-12 16:25:46.576][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:46.576][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml".
biodb.DEBUG[2022-04-12 16:25:46.576][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:25:46.607][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:25:46.607][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:25:46.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:46.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:46.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:46.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:46.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:46.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:46.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:46.623][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:46.623][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:46.623][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.623][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.623][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:46.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:46.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.623][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:46.638][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:46.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.638][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.638][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:46.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:46.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.638][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:46.638][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:46.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.638][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.654][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:46.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:46.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.654][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:46.654][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:46.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.654][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:46.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:46.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.670][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:46.670][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:46.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.670][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:46.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:46.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.685][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:46.685][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:46.685][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.685][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.685][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:46.685][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:46.685][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.685][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.685][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:46.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:46.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.701][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:46.701][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:46.701][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.701][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:46.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:46.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.717][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:46.717][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:46.717][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.717][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.717][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:46.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:46.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.717][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:46.732][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:46.732][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.732][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.732][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:46.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:46.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.748][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:46.748][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:46.748][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.748][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.748][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:46.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:46.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:46.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:46.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:46.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:46.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:46.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:46.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:46.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:46.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:46.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:46.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:46.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:46.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:46.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:46.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:46.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:46.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:46.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:46.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:46.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:46.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:46.795][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2022-04-12 16:25:46.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:46.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:46.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:46.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:46.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:46.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:46.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:46.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:46.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:46.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:46.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:46.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:46.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:46.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:46.826][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2022-04-12 16:25:46.826][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:25:46.826][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2022-04-12 16:25:46.826][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:46.826][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml".
biodb.DEBUG[2022-04-12 16:25:46.826][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:25:46.842][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:25:46.857][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:25:46.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:46.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:46.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:46.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:46.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:46.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:46.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:46.857][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:46.857][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:46.857][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.857][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:46.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:46.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.873][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:46.873][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:46.888][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.888][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.888][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:46.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:46.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.888][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:46.888][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:46.888][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.888][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.904][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:46.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:46.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.904][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:46.904][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:46.904][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.904][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.904][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:46.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:46.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.920][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:46.920][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:46.920][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.920][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:46.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:46.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.935][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:46.935][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:46.935][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.935][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.935][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:46.935][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:46.935][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.935][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.935][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:46.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:46.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.951][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:46.951][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:46.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.951][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:46.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:46.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.967][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:46.967][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:46.967][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.967][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.967][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:46.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:46.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.982][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:46.982][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:46.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.982][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.982][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:46.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:46.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.998][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:46.998][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:46.998][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.998][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.998][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:46.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:46.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:46.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:46.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:46.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:47.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:47.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:47.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:47.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:47.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:47.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:47.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:47.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:47.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:47.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:47.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:47.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:47.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:47.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:47.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:47.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:47.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:47.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:47.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:47.060][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2022-04-12 16:25:47.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:47.092][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:47.107][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:47.107][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-12 16:25:47.107][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:47.107][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-04-12 16:25:47.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:47.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:47.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:47.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:47.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:47.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:47.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:47.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:47.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:47.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:47.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:47.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:47.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:47.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:47.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:47.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:47.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:47.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:47.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:47.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:47.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:47.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:47.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:47.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:47.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:47.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:47.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:47.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:47.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:47.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:47.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:47.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:47.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:47.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:47.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:47.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:47.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:47.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:47.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:47.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:47.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:47.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:47.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:47.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:47.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:47.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:47.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:47.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:47.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:47.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:47.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:47.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:47.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:47.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:47.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:47.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:47.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:47.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:47.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:47.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:47.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:47.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:47.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:47.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:47.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:47.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:47.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:47.342][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:47.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:47.342][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:47.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:47.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:47.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:47.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:47.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:47.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:47.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:47.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:47.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:47.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:47.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:47.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:47.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:47.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:47.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:47.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:47.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:47.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:47.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:47.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:47.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:47.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:47.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:47.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:47.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:47.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:47.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:47.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:47.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:47.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:47.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:47.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:47.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:47.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:47.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:47.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:47.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:47.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:47.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:47.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:47.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:47.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:47.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:47.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:47.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:47.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:47.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:47.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:47.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:47.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:47.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:47.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:47.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:47.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:47.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:47.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:47.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:47.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:47.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:47.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:47.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:47.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:47.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:47.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:47.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:47.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:47.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:47.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:47.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:47.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:47.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:47.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:47.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:47.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:47.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:47.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:47.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:47.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:47.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:47.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:47.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:47.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:47.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:47.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:47.654][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:47.670][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:47.670][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1eb5a44d25716d90ff717fcfe93533e3".
biodb.TRACE[2022-04-12 16:25:47.670][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:47.670][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1eb5a44d25716d90ff717fcfe93533e3.content".
biodb.DEBUG[2022-04-12 16:25:47.670][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:47.670][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:47.670][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4ef91a3654a792571304ae6f83c5871b".
biodb.TRACE[2022-04-12 16:25:47.670][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:47.685][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ef91a3654a792571304ae6f83c5871b.content".
biodb.DEBUG[2022-04-12 16:25:47.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:47.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:47.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:47.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:47.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:47.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:47.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:47.685][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2022-04-12 16:25:47.685][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:25:47.685][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2022-04-12 16:25:47.701][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:47.701][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml".
biodb.DEBUG[2022-04-12 16:25:47.701][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:25:47.717][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:25:47.717][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:25:47.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:47.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:47.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:47.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:47.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:47.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:47.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:47.732][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:47.732][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:47.732][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.732][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:47.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:47.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.748][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:47.748][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:47.748][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.748][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.748][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:47.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:47.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.763][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:47.763][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:47.763][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.763][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.763][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:47.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:47.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.779][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:47.779][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:47.779][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.779][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.779][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:47.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:47.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.795][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:47.795][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:47.795][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.795][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.795][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:47.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:47.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.810][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:47.810][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:47.810][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.810][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.810][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:47.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:47.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.810][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:47.826][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.826][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.826][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:47.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:47.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.826][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:47.826][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:47.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.842][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:47.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:47.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.842][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:47.842][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:47.842][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.842][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.857][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:47.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:47.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.857][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:47.857][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:47.857][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.857][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.857][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:47.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:47.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.873][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:47.873][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:47.873][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.873][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.873][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:47.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:47.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:47.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:47.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:47.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:47.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:47.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:47.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:47.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:47.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:47.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:47.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:47.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:47.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:47.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:47.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:47.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:47.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:47.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:47.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:47.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:47.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:47.935][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2022-04-12 16:25:47.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:47.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:47.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:47.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:47.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:47.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:47.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:47.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:47.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:47.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:47.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:47.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:47.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:47.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:47.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:47.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:47.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:47.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:47.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:47.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:47.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:47.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:47.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:47.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:47.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:47.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:47.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:47.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:47.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:47.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:47.982][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2022-04-12 16:25:47.982][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:25:47.982][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2022-04-12 16:25:47.982][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:47.998][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml".
biodb.DEBUG[2022-04-12 16:25:47.998][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:25:48.013][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:25:48.013][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:25:48.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:48.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:48.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:48.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:48.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:48.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:48.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:48.029][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:48.029][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:48.029][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.029][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:48.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:48.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.045][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:48.045][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:48.045][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.045][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.045][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:48.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:48.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.060][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:48.060][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:48.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.060][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.060][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:48.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:48.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.060][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:48.076][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:48.076][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.076][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.076][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:48.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:48.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.076][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:48.076][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:48.092][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.092][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:48.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:48.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.092][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:48.092][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:48.092][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.092][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.107][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:48.107][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:48.107][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.107][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.107][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:48.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:48.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.107][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.123][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.123][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.123][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:48.123][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:48.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.138][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.138][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:48.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:48.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.138][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:48.138][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:48.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.154][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.154][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:48.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:48.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.154][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:48.154][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:48.154][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.154][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.154][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:48.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:48.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:48.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:48.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:48.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:48.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:48.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:48.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:48.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:48.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:48.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:48.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:48.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:48.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:48.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:48.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:48.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:48.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:48.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:48.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:48.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:48.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:48.232][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2022-04-12 16:25:48.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:48.263][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:48.279][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:48.279][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-12 16:25:48.279][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:48.279][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-04-12 16:25:48.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:48.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:48.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:48.310][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:48.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:48.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:48.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:48.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:48.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:48.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:48.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:48.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:48.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:48.342][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:48.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:48.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:48.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:48.373][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:48.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:48.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:48.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:48.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:48.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:48.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:48.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:48.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:48.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:48.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:48.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:48.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:48.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:48.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:48.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:48.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:48.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:48.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:48.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:48.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:48.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:48.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:48.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:48.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:48.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:48.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:48.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:48.451][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:48.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:48.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:48.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:48.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:48.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:48.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:48.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:48.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:48.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:48.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:48.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:48.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:48.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:48.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:48.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:48.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:48.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:48.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:48.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:48.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:48.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:48.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:48.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:48.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:48.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:48.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:48.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:48.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:48.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:48.545][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:48.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:48.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:48.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:48.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:48.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:48.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:48.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:48.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:48.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:48.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:48.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:48.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:48.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:48.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:48.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:48.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:48.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:48.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:48.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:48.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:48.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:48.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:48.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:48.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:48.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:48.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:48.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:48.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:48.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:48.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:48.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:48.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:48.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:48.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:48.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:48.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:48.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:48.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:48.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:48.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:48.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:48.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:48.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:48.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:48.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:48.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:48.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:48.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:48.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:48.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:48.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:48.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:48.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:48.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:48.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:48.717][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:48.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:48.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:48.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:48.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:48.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:48.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:48.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:48.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:48.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:48.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:48.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:48.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:48.779][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:48.795][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:48.795][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-04-12 16:25:48.795][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:48.795][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-04-12 16:25:48.826][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:48.826][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:48.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:48.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:48.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:48.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:48.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:48.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:48.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:48.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:48.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:48.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:48.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:48.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:48.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:48.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:48.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:48.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:48.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:48.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:48.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:48.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:48.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:48.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:48.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:48.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:48.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:48.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:48.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:48.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:48.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:48.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:48.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:48.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:48.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:48.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:48.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:48.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:48.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:48.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:48.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:48.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:48.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:48.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:48.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:48.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:48.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:48.982][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:48.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:48.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:48.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:48.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:48.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:48.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:49.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:49.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:49.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:49.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:49.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:49.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:49.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:49.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:49.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:49.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:49.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:49.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:49.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:49.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:49.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:49.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:49.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:49.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:49.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:49.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:49.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:49.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:49.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:49.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:49.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:49.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:49.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:49.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:49.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:49.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:49.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:49.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:49.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:49.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:49.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:49.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:49.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:49.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:49.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:49.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:49.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:49.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:49.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:49.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:49.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:49.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:49.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:49.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:49.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:49.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:49.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:49.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:49.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.170][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:49.170][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:49.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:49.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:49.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:49.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:49.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:49.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:49.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:49.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:49.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:49.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:49.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:49.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:49.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:49.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:49.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:49.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:49.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:49.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:49.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:49.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:49.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:49.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:49.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:49.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:49.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:49.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:49.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:49.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:49.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:49.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:49.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:49.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:49.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:49.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:49.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:49.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:49.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:49.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:49.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.310][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-12 16:25:49.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-12 16:25:49.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-12 16:25:49.310][biodb::testThat]
biodb.INFO [2022-04-12 16:25:49.310][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2022-04-12 16:25:49.310][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:49.326][biodb::testThat]
biodb.TRACE[2022-04-12 16:25:49.326][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-12 16:25:49.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-12 16:25:49.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:49.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:49.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:49.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:49.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:49.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:49.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:49.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:49.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:49.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:49.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:49.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:49.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:49.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:49.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:49.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:49.498][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:49.498][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:49.498][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-12 16:25:49.498][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:49.498][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-12 16:25:49.513][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:49.513][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:49.513][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-12 16:25:49.513][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:49.513][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-12 16:25:49.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:49.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:49.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:49.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:49.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:49.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:49.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:49.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:49.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:49.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:49.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:49.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:49.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:49.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:49.545][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:49.545][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:49.545][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-12 16:25:49.545][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:49.560][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-12 16:25:49.560][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-12 16:25:49.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:49.560][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:49.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:49.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:49.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:49.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:49.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:49.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:49.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:49.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:49.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:49.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.576][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:49.576][private$selectFields]
biodb.TRACE[2022-04-12 16:25:49.592][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 16:25:49.592][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 16:25:49.592][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:49.592][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:49.592][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:49.592][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.592][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.592][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:49.592][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:49.592][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.592][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.592][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:49.592][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:49.607][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:49.607][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:49.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.607][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.607][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-12 16:25:49.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:49.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:49.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:49.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:49.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:49.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:49.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.623][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-12 16:25:49.623][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-12 16:25:49.638][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-12 16:25:49.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:49.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:49.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:49.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:49.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:49.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:49.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:49.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:49.873][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:49.873][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:49.873][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-04-12 16:25:49.873][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:49.888][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-04-12 16:25:49.888][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:49.888][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:49.888][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-04-12 16:25:49.888][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:49.888][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-04-12 16:25:49.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:49.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:49.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:49.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:49.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:49.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:49.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:49.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:49.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:49.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:49.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:49.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:49.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:49.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:49.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:49.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:49.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:49.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:49.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:49.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:49.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:49.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:49.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:49.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:49.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:49.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:49.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:49.998][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-12 16:25:50.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:50.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:50.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:50.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:50.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:50.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:50.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:50.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.045][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:50.045][private$selectFields]
biodb.TRACE[2022-04-12 16:25:50.045][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 16:25:50.045][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 16:25:50.045][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:50.045][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.045][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.045][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.045][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.045][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.045][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.045][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.045][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.060][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:50.060][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:50.060][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.060][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.060][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.060][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-12 16:25:50.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.076][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-04-12 16:25:50.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:50.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:50.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:50.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:50.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:50.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:50.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:50.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.138][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:50.138][private$selectFields]
biodb.TRACE[2022-04-12 16:25:50.138][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 16:25:50.138][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 16:25:50.138][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:50.138][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.138][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.154][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.154][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.154][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.154][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.154][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.154][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:50.170][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:50.170][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.170][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.170][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.170][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.170][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-12 16:25:50.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.185][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-12 16:25:50.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:50.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:50.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:50.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:50.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:50.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:50.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:50.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.201][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:50.201][private$selectFields]
biodb.TRACE[2022-04-12 16:25:50.201][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 16:25:50.201][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 16:25:50.217][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:50.217][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.217][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.217][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.217][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.217][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.217][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.217][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.217][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.217][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:50.217][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:50.217][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.217][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.232][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.232][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-12 16:25:50.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.388][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-04-12 16:25:50.388][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-12 16:25:50.388][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-12 16:25:50.404][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-12 16:25:50.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-12 16:25:50.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-12 16:25:50.404][biodb::testThat]
biodb.INFO [2022-04-12 16:25:50.404][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2022-04-12 16:25:50.404][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:50.404][biodb::testThat]
biodb.TRACE[2022-04-12 16:25:50.404][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-12 16:25:50.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-12 16:25:50.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:50.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:50.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:50.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:50.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:50.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:50.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:50.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:50.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:50.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:50.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:50.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:50.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:50.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:50.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:50.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:50.560][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:50.560][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:50.560][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-12 16:25:50.560][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:50.576][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-12 16:25:50.576][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:50.576][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:50.576][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-12 16:25:50.576][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:50.576][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-12 16:25:50.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:50.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:50.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:50.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:50.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:50.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:50.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:50.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:50.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:50.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:50.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:50.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:50.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:50.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:50.607][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:50.607][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:50.607][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-12 16:25:50.607][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:50.607][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-12 16:25:50.623][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-12 16:25:50.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:50.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:50.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:50.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:50.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:50.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:50.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:50.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.638][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:50.638][private$selectFields]
biodb.TRACE[2022-04-12 16:25:50.638][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 16:25:50.638][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 16:25:50.638][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:50.638][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.638][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.638][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.638][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.638][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.654][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.654][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:50.654][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:50.654][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.654][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.654][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.654][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-12 16:25:50.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.670][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-12 16:25:50.670][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-12 16:25:50.670][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-12 16:25:50.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:50.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:50.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:50.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:50.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:50.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:50.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:50.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:50.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:50.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:50.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:50.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:50.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:50.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:50.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:50.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:50.842][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:50.842][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:50.842][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-04-12 16:25:50.842][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:50.857][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-04-12 16:25:50.857][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:50.857][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:50.857][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-04-12 16:25:50.857][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:50.857][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-04-12 16:25:50.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:50.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:50.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:50.873][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:50.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:50.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:50.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:50.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:50.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:50.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:50.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:50.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:50.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:50.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:50.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:50.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:50.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:50.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:50.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:50.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:50.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:50.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:50.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:50.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:50.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:50.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:50.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:50.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:50.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:50.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:50.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:50.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:50.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:50.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:50.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:50.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:50.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:50.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:50.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:50.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:50.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:50.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:50.920][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-12 16:25:50.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:50.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:50.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:50.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:50.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:50.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:50.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:50.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.951][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:50.951][private$selectFields]
biodb.TRACE[2022-04-12 16:25:50.951][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 16:25:50.951][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 16:25:50.951][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:50.951][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.951][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.951][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.951][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.951][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.951][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.951][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:50.967][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:50.967][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.967][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.967][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.967][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.967][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-12 16:25:50.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.982][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-04-12 16:25:50.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:50.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:50.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:50.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:50.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:50.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:50.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:50.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:50.998][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:50.998][private$selectFields]
biodb.TRACE[2022-04-12 16:25:50.998][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 16:25:50.998][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 16:25:50.998][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:50.998][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.998][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:50.998][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:50.998][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.013][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.013][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.013][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.013][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:51.013][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:51.013][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.013][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.013][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.013][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-12 16:25:51.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.029][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-12 16:25:51.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:51.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:51.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:51.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:51.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:51.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:51.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:51.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.045][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:51.045][private$selectFields]
biodb.TRACE[2022-04-12 16:25:51.060][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 16:25:51.060][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 16:25:51.060][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:51.060][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.060][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.060][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.060][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.060][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.076][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.076][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:51.076][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:51.076][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.076][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.076][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.076][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.076][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-12 16:25:51.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.092][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-04-12 16:25:51.092][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-12 16:25:51.092][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-12 16:25:51.107][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-12 16:25:51.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-12 16:25:51.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-12 16:25:51.107][biodb::testThat]
biodb.INFO [2022-04-12 16:25:51.107][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2022-04-12 16:25:51.107][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:51.107][biodb::testThat]
biodb.TRACE[2022-04-12 16:25:51.107][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-04-12 16:25:51.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-04-12 16:25:51.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:51.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:51.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:51.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:51.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:51.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:51.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:51.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:51.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:51.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:51.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:51.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:51.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:51.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:51.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:51.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:51.263][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:51.279][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:51.279][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-04-12 16:25:51.279][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:51.279][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-04-12 16:25:51.279][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:51.279][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:51.279][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-04-12 16:25:51.295][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:51.295][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-04-12 16:25:51.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:51.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:51.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:51.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:51.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:51.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:51.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:51.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:51.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:51.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:51.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:51.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:51.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:51.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:51.310][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:51.310][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:51.310][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-04-12 16:25:51.326][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:51.326][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-04-12 16:25:51.326][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-12 16:25:51.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:51.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:51.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:51.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:51.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:51.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:51.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:51.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.342][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:51.342][private$selectFields]
biodb.TRACE[2022-04-12 16:25:51.342][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 16:25:51.342][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 16:25:51.342][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:51.342][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.342][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.342][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.357][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.357][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.357][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.357][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.357][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:51.357][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:51.357][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.357][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.357][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.357][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-12 16:25:51.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.373][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-12 16:25:51.373][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-04-12 16:25:51.373][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-12 16:25:51.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:51.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:51.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:51.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:51.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:51.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:51.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:51.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:51.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:51.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:51.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:51.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:51.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:51.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:51.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:51.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:51.545][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:51.560][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:51.560][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-04-12 16:25:51.560][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:51.560][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-04-12 16:25:51.560][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:51.560][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:51.576][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-04-12 16:25:51.576][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:51.576][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-04-12 16:25:51.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:51.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:51.576][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:51.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:51.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:51.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:51.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:51.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:51.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:51.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:51.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:51.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:51.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:51.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:51.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:51.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:51.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:51.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:51.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:51.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:51.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:51.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:51.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:51.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:51.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:51.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:51.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:51.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:51.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:51.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:51.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:51.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:51.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:51.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:51.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:51.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:51.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:51.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:51.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:51.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:51.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:51.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:51.638][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-04-12 16:25:51.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:51.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:51.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:51.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:51.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:51.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:51.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:51.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.670][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:51.670][private$selectFields]
biodb.TRACE[2022-04-12 16:25:51.670][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 16:25:51.670][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 16:25:51.670][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:51.670][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.670][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.670][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.670][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.685][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.685][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.685][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.685][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:51.685][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:51.685][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.685][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.685][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.685][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.685][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-12 16:25:51.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.701][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-04-12 16:25:51.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:51.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:51.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:51.717][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:51.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:51.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:51.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:51.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.732][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:51.732][private$selectFields]
biodb.TRACE[2022-04-12 16:25:51.732][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 16:25:51.732][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 16:25:51.732][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:51.732][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.732][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.732][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.732][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.732][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.732][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.748][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.748][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.748][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:51.748][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:51.748][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.748][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.748][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.748][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.748][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-12 16:25:51.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.763][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-04-12 16:25:51.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:51.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:51.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:51.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:51.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:51.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:51.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:51.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.795][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:51.795][private$selectFields]
biodb.TRACE[2022-04-12 16:25:51.795][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-04-12 16:25:51.795][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-04-12 16:25:51.795][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:51.795][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.795][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.795][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.795][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.795][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.795][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.795][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.795][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.810][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:51.810][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-04-12 16:25:51.810][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.810][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.810][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.810][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.810][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-04-12 16:25:51.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.826][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-04-12 16:25:51.826][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-04-12 16:25:51.826][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-04-12 16:25:51.857][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-04-12 16:25:51.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-04-12 16:25:51.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-04-12 16:25:51.857][biodb::testThat]
biodb.INFO [2022-04-12 16:25:51.857][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2022-04-12 16:25:51.857][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:51.857][biodb::testThat]
biodb.DEBUG[2022-04-12 16:25:51.857][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2022-04-12 16:25:51.857][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:25:51.873][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2022-04-12 16:25:51.873][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:51.873][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGA.xml".
biodb.DEBUG[2022-04-12 16:25:51.873][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:25:51.904][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:25:51.904][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:25:51.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:51.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:51.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:51.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:51.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:51.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:51.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:51.904][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:51.920][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:51.920][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.920][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:51.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:51.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.935][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:51.935][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:51.935][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.935][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.935][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:51.935][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:51.935][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.935][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.935][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:51.935][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:51.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.951][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.951][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:51.951][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:51.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.951][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.951][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:51.951][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:51.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.951][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.951][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:51.951][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:51.951][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.967][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.967][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:51.967][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:51.967][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.967][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.967][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:51.967][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:51.967][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.967][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.967][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:51.967][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:51.967][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.967][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.982][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:51.982][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:51.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.982][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:51.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:51.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:51.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:51.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:51.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:51.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:51.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:51.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:52.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:52.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:52.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:52.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:52.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:52.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:52.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:52.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:52.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:52.045][self$createEntryFromContent] Accession numbers: .
biodb.DEBUG[2022-04-12 16:25:52.045][self$createEntryFromContent] Found %d entry/ies without an accession number. Set it/them to NULL.1
biodb.INFO [2022-04-12 16:25:52.045][biodb::testThat]
biodb.INFO [2022-04-12 16:25:52.045][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2022-04-12 16:25:52.045][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:52.045][biodb::testThat]
biodb.DEBUG[2022-04-12 16:25:52.060][function(conn, opt)] IDS: [4]: "WRONGB, 15440, 2528, 7799"
biodb.DEBUG[2022-04-12 16:25:52.060][private$loadEntries] Creating entries from ids [3]: "WRONGB, 2528, 7799".
biodb.DEBUG[2022-04-12 16:25:52.060][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2022-04-12 16:25:52.060][cch$loadFileContent] Trying to load 3 files from cache: [3]: "WRONGB, 2528, 7799".
biodb.TRACE[2022-04-12 16:25:52.060][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2022-04-12 16:25:52.076][loadFileContents] Loaded 3 files from cache: [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGB.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2022-04-12 16:25:52.076][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:25:52.092][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2022-04-12 16:25:52.107][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2022-04-12 16:25:52.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:52.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:52.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:52.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:52.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:52.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:52.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:52.107][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:52.123][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:52.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.123][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:52.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:52.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.138][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:52.138][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:52.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.138][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.138][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:52.138][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:52.138][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.138][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.138][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:52.138][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:52.154][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.154][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.154][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:52.154][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:52.154][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.154][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.154][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:52.154][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:52.154][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.154][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.154][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:52.154][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:52.154][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.170][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.170][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:52.170][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:52.170][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.170][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.170][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:52.170][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:52.170][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.170][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.170][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:52.170][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:52.170][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.185][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.185][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:52.185][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:52.185][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.185][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:52.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:52.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:52.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:52.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:52.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:52.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:52.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:52.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:52.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:52.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:52.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:52.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:52.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:52.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:52.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:52.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:52.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:52.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:52.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:52.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:52.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:52.232][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:52.232][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:52.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.248][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:52.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:52.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.263][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:52.263][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:52.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.263][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.263][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:52.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:52.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.279][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:52.279][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:52.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.279][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.279][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:52.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:52.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.295][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:52.295][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:52.310][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.310][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:52.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:52.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.326][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:52.326][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:52.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.326][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:52.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:52.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.342][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:52.342][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:52.342][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.342][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.342][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:52.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:52.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.357][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:52.373][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:52.373][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.373][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.373][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:52.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:52.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.388][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:52.388][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:52.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.388][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:52.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:52.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.404][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:52.404][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:52.404][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.404][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.404][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:52.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:52.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.420][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:52.420][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:52.420][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.420][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.435][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:52.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:52.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.435][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:52.451][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:52.451][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.451][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:52.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:52.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:52.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:52.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:52.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:52.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:52.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:52.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:52.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:52.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:52.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:52.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:52.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:52.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:52.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:52.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:52.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:52.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:52.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:52.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:52.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:52.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:52.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:52.513][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:52.513][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:52.513][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.513][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:52.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:52.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.545][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:52.545][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:52.545][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.545][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.545][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:52.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:52.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.560][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:52.560][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:52.560][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.560][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.560][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:52.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:52.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.576][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:52.576][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:52.576][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.576][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.576][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:52.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:52.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.592][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:52.592][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:52.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.607][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.607][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:52.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:52.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.623][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:52.623][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:52.623][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.623][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.623][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:52.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:52.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.638][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:52.638][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:52.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.638][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.638][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:52.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:52.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.654][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:52.654][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:52.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.654][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:52.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:52.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.670][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:52.670][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:52.670][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.685][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.685][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:52.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:52.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.701][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:52.701][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:52.701][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.701][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.701][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:52.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:52.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.717][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:52.717][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:52.717][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.717][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.717][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:52.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:52.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:52.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:52.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:52.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:52.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:52.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:52.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:52.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:52.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:52.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:52.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:52.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:52.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:52.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:52.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:52.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:52.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:52.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:52.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:52.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:52.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:52.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:52.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:52.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:52.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:52.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:52.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:52.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:52.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:52.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:52.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:52.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:52.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:52.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:52.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:52.810][self$createEntryFromContent] Accession numbers: , 2528, 7799.
biodb.DEBUG[2022-04-12 16:25:52.810][self$createEntryFromContent] Found %d entry/ies without an accession number. Set it/them to NULL.1
biodb.DEBUG[2022-04-12 16:25:52.810][function(conn, opt)] Entries: [4]: "NULL, <environment>, <environment>, <environment>"
biodb.INFO [2022-04-12 16:25:52.826][biodb::testThat]
biodb.INFO [2022-04-12 16:25:52.826][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2022-04-12 16:25:52.826][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:52.826][biodb::testThat]
biodb.INFO [2022-04-12 16:25:52.842][biodb::testThat]
biodb.INFO [2022-04-12 16:25:52.857][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2022-04-12 16:25:52.857][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:52.857][biodb::testThat]
biodb.INFO [2022-04-12 16:25:52.857][biodb::testThat]
biodb.INFO [2022-04-12 16:25:52.857][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2022-04-12 16:25:52.857][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:52.857][biodb::testThat]
biodb.DEBUG[2022-04-12 16:25:52.857][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1*&searchCategory=CHEBI ID&maximumResults=100&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:52.873][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:52.873][cch$loadFileContent] Trying to load 1 files from cache: [1]: "abfdad4f2c265f1c152262cabd0cf864".
biodb.TRACE[2022-04-12 16:25:52.873][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:52.873][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/abfdad4f2c265f1c152262cabd0cf864.content".
biodb.INFO [2022-04-12 16:25:52.873][biodb::testThat]
biodb.INFO [2022-04-12 16:25:52.888][biodb::testThat] Running test function test.annotateMzValues (" annotateMzValues() works correctly. ").
biodb.INFO [2022-04-12 16:25:52.888][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:52.888][biodb::testThat]
biodb.ERROR[2022-04-12 16:25:52.888][conn$annotateMzValues] No column named "mz" was found inside data frame.
biodb.ERROR[2022-04-12 16:25:52.904][ef$checkIsDefined] Field(s) "foo" is/are not defined.
biodb.INFO [2022-04-12 16:25:52.920][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-04-12 16:25:52.920][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2022-04-12 16:25:52.920][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2022-04-12 16:25:52.920][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-04-12 16:25:52.920][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:52.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:52.920][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:52.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:52.920][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:52.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-04-12 16:25:52.935][biodb::testContext]
biodb.INFO [2022-04-12 16:25:52.935][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 16:25:52.935][biodb::testContext] Test context - Test conversions
biodb.INFO [2022-04-12 16:25:52.935][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 16:25:52.935][biodb::testContext]
biodb.INFO [2022-04-12 16:25:52.951][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-04-12 16:25:52.951][self$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-04-12 16:25:52.951][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 16:25:52.951][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-04-12 16:25:52.951][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-04-12 16:25:52.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:52.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:52.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:52.967][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-04-12 16:25:52.967][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-04-12 16:25:52.967][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:52.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:52.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:52.967][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-04-12 16:25:52.967][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-04-12 16:25:52.967][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:52.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:52.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:52.967][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-04-12 16:25:52.967][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-04-12 16:25:52.967][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-04-12 16:25:52.967][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:52.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:52.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:52.982][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-04-12 16:25:52.982][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-04-12 16:25:52.982][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-04-12 16:25:52.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:52.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:52.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:52.982][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-04-12 16:25:52.982][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-04-12 16:25:52.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:52.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:52.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:52.982][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-04-12 16:25:52.982][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-04-12 16:25:52.982][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-04-12 16:25:52.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:52.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:52.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:52.998][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-04-12 16:25:52.998][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-04-12 16:25:52.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:52.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:52.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:52.998][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-04-12 16:25:52.998][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-04-12 16:25:52.998][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-04-12 16:25:52.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:52.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:52.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:52.998][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-04-12 16:25:52.998][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-04-12 16:25:52.998][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-04-12 16:25:53.013][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-04-12 16:25:53.013][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-04-12 16:25:53.013][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-04-12 16:25:53.013][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.013][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-04-12 16:25:53.013][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-04-12 16:25:53.013][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.013][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-04-12 16:25:53.013][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-04-12 16:25:53.013][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.029][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-04-12 16:25:53.029][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-04-12 16:25:53.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.029][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-04-12 16:25:53.029][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-04-12 16:25:53.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.029][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-04-12 16:25:53.029][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-04-12 16:25:53.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.029][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-04-12 16:25:53.045][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-04-12 16:25:53.045][self$set] Set key svn.binary.path to "C:\PROGRA~1\TORTOI~1\bin\svn.exe".
biodb.DEBUG[2022-04-12 16:25:53.045][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.045][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-04-12 16:25:53.045][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-04-12 16:25:53.045][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-04-12 16:25:53.045][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.045][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-04-12 16:25:53.045][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:53.060][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-04-12 16:25:53.060][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:53.060][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:53.060][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:53.060][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:53.060][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:53.060][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 16:25:53.060][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 16:25:53.060][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:53.060][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:53.060][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-04-12 16:25:53.060][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:53.060][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:53.060][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:53.060][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 16:25:53.060][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 16:25:53.060][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 16:25:53.060][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 16:25:53.060][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 16:25:53.076][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 16:25:53.076][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:53.076][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:53.076][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:53.076][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:53.076][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:53.076][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:53.076][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:53.076][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:53.076][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:53.076][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:53.076][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:53.076][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-04-12 16:25:53.092][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:53.092][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 16:25:53.092][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:53.092][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:53.092][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:53.092][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:53.092][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:53.092][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 16:25:53.092][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 16:25:53.092][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:53.092][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:53.092][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-04-12 16:25:53.092][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:53.092][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:53.092][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:53.107][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 16:25:53.107][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 16:25:53.107][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 16:25:53.107][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 16:25:53.107][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 16:25:53.107][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 16:25:53.107][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:53.107][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:53.107][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:53.107][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:53.107][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:53.107][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:53.107][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:53.107][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:53.107][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:53.107][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:53.107][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:53.107][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-04-12 16:25:53.123][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:53.123][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-04-12 16:25:53.123][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:53.123][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:53.123][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:53.123][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:53.123][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:53.123][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 16:25:53.123][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 16:25:53.123][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:53.123][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:53.138][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-04-12 16:25:53.138][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:53.138][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:53.138][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:53.138][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:53.138][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 16:25:53.138][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:53.138][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:53.138][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:53.138][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:53.138][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:53.138][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:53.138][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:53.138][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:53.138][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:53.154][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:53.154][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:53.154][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-04-12 16:25:53.154][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:53.154][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 16:25:53.154][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:53.154][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:53.154][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:53.154][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:53.154][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:53.154][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 16:25:53.154][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 16:25:53.154][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:53.154][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:53.170][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-04-12 16:25:53.170][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:53.170][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:53.170][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:53.170][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:53.170][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 16:25:53.170][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:53.170][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:53.170][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:53.170][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:53.170][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:53.170][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:53.170][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:53.170][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:53.170][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:53.185][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:53.185][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:53.185][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 16:25:53.185][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.185][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.185][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.185][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.217][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.217][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.217][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.248][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.263][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-04-12 16:25:53.263][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-04-12 16:25:53.263][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-04-12 16:25:53.263][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-04-12 16:25:53.263][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-12 16:25:53.263][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-04-12 16:25:53.279][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-04-12 16:25:53.279][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-04-12 16:25:53.279][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-04-12 16:25:53.279][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-04-12 16:25:53.279][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-12 16:25:53.279][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-04-12 16:25:53.279][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-04-12 16:25:53.279][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-04-12 16:25:53.279][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-04-12 16:25:53.279][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-04-12 16:25:53.295][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-04-12 16:25:53.295][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-04-12 16:25:53.295][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-12 16:25:53.295][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-04-12 16:25:53.295][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-04-12 16:25:53.295][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-04-12 16:25:53.295][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-04-12 16:25:53.295][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-04-12 16:25:53.295][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-04-12 16:25:53.295][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-04-12 16:25:53.295][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-04-12 16:25:53.310][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-04-12 16:25:53.310][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-04-12 16:25:53.310][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-04-12 16:25:53.310][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-04-12 16:25:53.310][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-04-12 16:25:53.310][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-04-12 16:25:53.310][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-04-12 16:25:53.310][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-04-12 16:25:53.310][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-04-12 16:25:53.310][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-04-12 16:25:53.326][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-04-12 16:25:53.326][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-04-12 16:25:53.326][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-04-12 16:25:53.326][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-04-12 16:25:53.326][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-04-12 16:25:53.326][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-04-12 16:25:53.326][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-04-12 16:25:53.326][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-04-12 16:25:53.326][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-04-12 16:25:53.326][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-04-12 16:25:53.326][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-04-12 16:25:53.342][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-04-12 16:25:53.342][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-04-12 16:25:53.342][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-04-12 16:25:53.342][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-04-12 16:25:53.342][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-04-12 16:25:53.342][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-04-12 16:25:53.342][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-04-12 16:25:53.342][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-04-12 16:25:53.342][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-04-12 16:25:53.342][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-04-12 16:25:53.342][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-04-12 16:25:53.357][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-04-12 16:25:53.357][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-04-12 16:25:53.357][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-04-12 16:25:53.357][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-04-12 16:25:53.357][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-04-12 16:25:53.357][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-04-12 16:25:53.357][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-04-12 16:25:53.357][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-12 16:25:53.357][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-12 16:25:53.357][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-04-12 16:25:53.373][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-04-12 16:25:53.373][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-04-12 16:25:53.373][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-04-12 16:25:53.373][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-04-12 16:25:53.373][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-04-12 16:25:53.373][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-04-12 16:25:53.373][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-04-12 16:25:53.373][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-04-12 16:25:53.373][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-04-12 16:25:53.373][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-04-12 16:25:53.373][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-04-12 16:25:53.388][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-04-12 16:25:53.388][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-04-12 16:25:53.388][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-04-12 16:25:53.388][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-04-12 16:25:53.388][initialize] This is biodb version 1.2.2.
biodb.DEBUG[2022-04-12 16:25:53.388][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 16:25:53.388][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.388][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:53.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:53.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.404][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:53.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:53.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.404][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:53.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:53.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.420][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:53.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:53.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.420][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:53.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:53.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.435][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:53.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:53.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.435][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:53.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:53.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:53.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:53.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:53.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:53.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.467][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:53.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:53.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.467][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:53.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:53.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.467][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:53.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:53.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.482][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:53.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:53.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.482][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:53.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:53.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.498][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:53.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:53.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.498][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:53.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:53.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.498][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:53.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:53.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.513][biodb$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2022-04-12 16:25:53.513][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2022-04-12 16:25:53.513][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:53.513][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-04-12 16:25:53.513][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:53.513][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:53.513][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:53.513][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:53.529][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:53.529][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2022-04-12 16:25:53.529][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-04-12 16:25:53.529][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:53.529][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:53.529][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2022-04-12 16:25:53.529][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:53.529][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2022-04-12 16:25:53.529][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2022-04-12 16:25:53.529][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2022-04-12 16:25:53.529][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2022-04-12 16:25:53.529][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2022-04-12 16:25:53.529][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2022-04-12 16:25:53.529][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2022-04-12 16:25:53.529][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2022-04-12 16:25:53.529][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2022-04-12 16:25:53.529][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2022-04-12 16:25:53.529][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2022-04-12 16:25:53.529][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:53.529][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 16:25:53.529][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 16:25:53.529][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 16:25:53.529][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-04-12 16:25:53.529][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:53.529][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:53.529][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:53.545][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:53.545][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:53.545][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:53.545][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-12 16:25:53.545][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2022-04-12 16:25:53.545][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:53.545][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:53.545][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:53.545][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2022-04-12 16:25:53.545][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2022-04-12 16:25:53.545][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-12 16:25:53.545][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-12 16:25:53.545][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2022-04-12 16:25:53.545][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-12 16:25:53.560][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-12 16:25:53.560][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-12 16:25:53.560][super$initialize] Initialize connector chebi.
biodb.DEBUG[2022-04-12 16:25:53.560][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2022-04-12 16:25:53.560][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2022-04-12 16:25:53.560][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2022-04-12 16:25:53.560][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-04-12 16:25:53.560][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-04-12 16:25:53.560][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2022-04-12 16:25:53.560][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2022-04-12 16:25:53.560][biodb::testThat]
biodb.INFO [2022-04-12 16:25:53.576][biodb::testThat] Running test function test_chebi_convCasToChebi (" convCasToChebi() works. ").
biodb.INFO [2022-04-12 16:25:53.576][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:53.576][biodb::testThat]
biodb.DEBUG[2022-04-12 16:25:53.576][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2022-04-12 16:25:53.576][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:53.576][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2022-04-12 16:25:53.576][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:53.592][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2022-04-12 16:25:53.592][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:53.592][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:53.592][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2022-04-12 16:25:53.592][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:53.592][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2022-04-12 16:25:53.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:53.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:53.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:53.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.607][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:53.607][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:53.607][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2022-04-12 16:25:53.607][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:53.607][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2022-04-12 16:25:53.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:53.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:53.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:53.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:53.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:53.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:53.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.638][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:53.654][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:53.654][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2022-04-12 16:25:53.654][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:53.654][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2022-04-12 16:25:53.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:53.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:53.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:53.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.670][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:53.670][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:53.670][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2022-04-12 16:25:53.670][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:53.670][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2022-04-12 16:25:53.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:53.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:53.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:53.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:53.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:53.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:53.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.685][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:53.685][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:53.701][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2022-04-12 16:25:53.701][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:53.701][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2022-04-12 16:25:53.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:53.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:53.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:53.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.701][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:53.717][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:53.717][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2022-04-12 16:25:53.717][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:53.717][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2022-04-12 16:25:53.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:53.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:53.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:53.717][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.717][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:53.732][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:53.732][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70e3912746e7e39b39fbbffe6c90b502".
biodb.TRACE[2022-04-12 16:25:53.732][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:53.732][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70e3912746e7e39b39fbbffe6c90b502.content".
biodb.DEBUG[2022-04-12 16:25:53.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:53.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:53.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:53.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-04-12 16:25:53.748][biodb::testThat]
biodb.INFO [2022-04-12 16:25:53.748][biodb::testThat] Running test function test_chebi_convInchiToChebi (" convInchiToChebi() works. ").
biodb.INFO [2022-04-12 16:25:53.748][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:53.748][biodb::testThat]
biodb.DEBUG[2022-04-12 16:25:53.748][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI=1S/C15H24/c1-9(2)11-7-8-15(4)12-6-5-10(3)14(15)13(11)12/h5,9,11-14H,6-8H2,1-4H3/t11?,12?,13?,14?,15-/m0/s1&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:53.748][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:53.748][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3d0a94707e73df0ba810a5a87df958c6".
biodb.TRACE[2022-04-12 16:25:53.748][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:53.763][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3d0a94707e73df0ba810a5a87df958c6.content".
biodb.DEBUG[2022-04-12 16:25:53.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:53.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:53.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:53.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.763][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.779][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:53.779][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:53.779][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c23a09621704f6dcea62f90283def982".
biodb.TRACE[2022-04-12 16:25:53.779][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:53.779][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c23a09621704f6dcea62f90283def982.content".
biodb.DEBUG[2022-04-12 16:25:53.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:53.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:53.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:53.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-04-12 16:25:53.795][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-04-12 16:25:53.795][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2022-04-12 16:25:53.795][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2022-04-12 16:25:53.795][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-04-12 16:25:53.795][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:53.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:53.795][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:53.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:53.795][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-04-12 16:25:53.795][biodb::testContext]
biodb.INFO [2022-04-12 16:25:53.810][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 16:25:53.810][biodb::testContext] Test context - Test web services
biodb.INFO [2022-04-12 16:25:53.810][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 16:25:53.810][biodb::testContext]
biodb.INFO [2022-04-12 16:25:53.810][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-04-12 16:25:53.826][self$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-04-12 16:25:53.826][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 16:25:53.826][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-04-12 16:25:53.826][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-04-12 16:25:53.826][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.826][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-04-12 16:25:53.826][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-04-12 16:25:53.826][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.842][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-04-12 16:25:53.842][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-04-12 16:25:53.842][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.842][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-04-12 16:25:53.842][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-04-12 16:25:53.842][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-04-12 16:25:53.842][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.842][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-04-12 16:25:53.842][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-04-12 16:25:53.842][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-04-12 16:25:53.842][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.857][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-04-12 16:25:53.857][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-04-12 16:25:53.857][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.857][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-04-12 16:25:53.857][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-04-12 16:25:53.857][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-04-12 16:25:53.857][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.857][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-04-12 16:25:53.857][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-04-12 16:25:53.857][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.873][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-04-12 16:25:53.873][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-04-12 16:25:53.873][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-04-12 16:25:53.873][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.873][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-04-12 16:25:53.873][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-04-12 16:25:53.873][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-04-12 16:25:53.873][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-04-12 16:25:53.873][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-04-12 16:25:53.873][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-04-12 16:25:53.873][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.888][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-04-12 16:25:53.888][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-04-12 16:25:53.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.888][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-04-12 16:25:53.888][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-04-12 16:25:53.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.888][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-04-12 16:25:53.888][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-04-12 16:25:53.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.904][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-04-12 16:25:53.904][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-04-12 16:25:53.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.904][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-04-12 16:25:53.904][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-04-12 16:25:53.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.904][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-04-12 16:25:53.904][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-04-12 16:25:53.904][self$set] Set key svn.binary.path to "C:\PROGRA~1\TORTOI~1\bin\svn.exe".
biodb.DEBUG[2022-04-12 16:25:53.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.920][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-04-12 16:25:53.920][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-04-12 16:25:53.920][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-04-12 16:25:53.920][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:53.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:53.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:53.920][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-04-12 16:25:53.920][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:53.920][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-04-12 16:25:53.920][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:53.920][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:53.920][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:53.920][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:53.920][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:53.935][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 16:25:53.935][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 16:25:53.935][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:53.935][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:53.935][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-04-12 16:25:53.935][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:53.935][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:53.935][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:53.935][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 16:25:53.935][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 16:25:53.935][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 16:25:53.935][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 16:25:53.935][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 16:25:53.935][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 16:25:53.935][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:53.935][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:53.935][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:53.935][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:53.935][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:53.951][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:53.951][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:53.951][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:53.951][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:53.951][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:53.951][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:53.951][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-04-12 16:25:53.951][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:53.951][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 16:25:53.951][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:53.951][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:53.951][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:53.951][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:53.951][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:53.967][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 16:25:53.967][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 16:25:53.967][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:53.967][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:53.967][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-04-12 16:25:53.967][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:53.967][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:53.967][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:53.967][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 16:25:53.967][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 16:25:53.967][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 16:25:53.967][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 16:25:53.967][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 16:25:53.967][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 16:25:53.967][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:53.967][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:53.967][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:53.967][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:53.967][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:53.982][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:53.982][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:53.982][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:53.982][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:53.982][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:53.982][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:53.982][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-04-12 16:25:53.982][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:53.982][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-04-12 16:25:53.982][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:53.982][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:53.982][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:53.982][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:53.982][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:53.998][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 16:25:53.998][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 16:25:53.998][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:53.998][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:53.998][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-04-12 16:25:53.998][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:53.998][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:53.998][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:53.998][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:53.998][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 16:25:53.998][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:53.998][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:53.998][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:53.998][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:54.013][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:54.013][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:54.013][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:54.013][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:54.013][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:54.013][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:54.013][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:54.013][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-04-12 16:25:54.013][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:54.013][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 16:25:54.013][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:54.013][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:54.013][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:54.013][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:54.029][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:54.029][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 16:25:54.029][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 16:25:54.029][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:54.029][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:54.029][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-04-12 16:25:54.029][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:54.029][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:54.029][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:54.029][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:54.029][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 16:25:54.029][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:54.029][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:54.029][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:54.029][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:54.045][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:54.045][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:54.045][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:54.045][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:54.045][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:54.045][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:54.045][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:54.045][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 16:25:54.045][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.045][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.060][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.060][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.060][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.060][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.076][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.076][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.076][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.092][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.092][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.107][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.107][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.107][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.107][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.123][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.123][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.123][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.138][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-04-12 16:25:54.138][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-04-12 16:25:54.138][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-04-12 16:25:54.138][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-04-12 16:25:54.138][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-12 16:25:54.138][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-04-12 16:25:54.138][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-04-12 16:25:54.138][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-04-12 16:25:54.138][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-04-12 16:25:54.154][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-04-12 16:25:54.154][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-12 16:25:54.154][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-04-12 16:25:54.154][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-04-12 16:25:54.154][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-04-12 16:25:54.154][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-04-12 16:25:54.154][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-04-12 16:25:54.154][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-04-12 16:25:54.154][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-04-12 16:25:54.154][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-12 16:25:54.170][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-04-12 16:25:54.170][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-04-12 16:25:54.170][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-04-12 16:25:54.170][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-04-12 16:25:54.170][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-04-12 16:25:54.170][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-04-12 16:25:54.170][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-04-12 16:25:54.170][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-04-12 16:25:54.170][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-04-12 16:25:54.170][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-04-12 16:25:54.170][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-04-12 16:25:54.185][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-04-12 16:25:54.185][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-04-12 16:25:54.185][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-04-12 16:25:54.185][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-04-12 16:25:54.185][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-04-12 16:25:54.185][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-04-12 16:25:54.185][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-04-12 16:25:54.185][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-04-12 16:25:54.185][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-04-12 16:25:54.185][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-04-12 16:25:54.201][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-04-12 16:25:54.201][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-04-12 16:25:54.201][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-04-12 16:25:54.201][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-04-12 16:25:54.201][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-04-12 16:25:54.201][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-04-12 16:25:54.201][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-04-12 16:25:54.201][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-04-12 16:25:54.201][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-04-12 16:25:54.201][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-04-12 16:25:54.201][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-04-12 16:25:54.217][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-04-12 16:25:54.217][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-04-12 16:25:54.217][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-04-12 16:25:54.217][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-04-12 16:25:54.217][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-04-12 16:25:54.217][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-04-12 16:25:54.217][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-04-12 16:25:54.217][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-04-12 16:25:54.217][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-04-12 16:25:54.217][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-04-12 16:25:54.232][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-04-12 16:25:54.232][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-04-12 16:25:54.232][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-04-12 16:25:54.232][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-04-12 16:25:54.232][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-04-12 16:25:54.232][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-12 16:25:54.232][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-12 16:25:54.232][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-04-12 16:25:54.232][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-04-12 16:25:54.232][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-04-12 16:25:54.232][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-04-12 16:25:54.232][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-04-12 16:25:54.248][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-04-12 16:25:54.248][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-04-12 16:25:54.248][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-04-12 16:25:54.248][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-04-12 16:25:54.248][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-04-12 16:25:54.248][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-04-12 16:25:54.248][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-04-12 16:25:54.248][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-04-12 16:25:54.248][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-04-12 16:25:54.248][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-04-12 16:25:54.263][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-04-12 16:25:54.263][initialize] This is biodb version 1.2.2.
biodb.DEBUG[2022-04-12 16:25:54.263][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 16:25:54.263][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.263][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:54.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:54.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:54.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:54.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:54.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:54.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:54.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:54.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:54.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:54.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:54.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:54.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:54.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:54.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:54.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:54.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.310][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:54.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:54.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:54.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:54.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:54.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:54.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.342][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:54.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:54.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.342][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:54.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:54.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:54.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:54.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:54.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:54.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:54.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:54.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.373][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:54.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:54.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.373][biodb$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2022-04-12 16:25:54.373][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2022-04-12 16:25:54.388][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:54.388][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-04-12 16:25:54.388][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:54.388][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:54.388][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:54.388][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:54.388][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:54.388][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2022-04-12 16:25:54.388][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-04-12 16:25:54.388][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:54.388][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:54.388][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2022-04-12 16:25:54.388][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:54.404][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2022-04-12 16:25:54.404][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2022-04-12 16:25:54.404][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2022-04-12 16:25:54.404][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2022-04-12 16:25:54.404][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2022-04-12 16:25:54.404][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2022-04-12 16:25:54.404][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2022-04-12 16:25:54.404][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2022-04-12 16:25:54.404][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2022-04-12 16:25:54.404][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2022-04-12 16:25:54.404][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2022-04-12 16:25:54.404][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:54.404][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 16:25:54.404][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 16:25:54.404][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 16:25:54.404][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-04-12 16:25:54.404][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:54.404][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:54.404][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:54.404][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:54.404][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:54.404][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:54.404][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-12 16:25:54.404][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2022-04-12 16:25:54.404][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:54.404][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:54.420][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:54.420][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2022-04-12 16:25:54.420][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2022-04-12 16:25:54.420][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-12 16:25:54.420][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-12 16:25:54.420][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2022-04-12 16:25:54.420][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-12 16:25:54.420][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-12 16:25:54.420][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-12 16:25:54.420][super$initialize] Initialize connector chebi.
biodb.DEBUG[2022-04-12 16:25:54.420][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2022-04-12 16:25:54.435][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2022-04-12 16:25:54.435][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2022-04-12 16:25:54.435][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-04-12 16:25:54.435][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-04-12 16:25:54.435][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2022-04-12 16:25:54.435][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2022-04-12 16:25:54.435][biodb::testThat]
biodb.INFO [2022-04-12 16:25:54.435][biodb::testThat] Running test function test.chebi.wsGetLiteEntity (" Web service getLiteEntity works fine. ").
biodb.INFO [2022-04-12 16:25:54.435][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:54.435][biodb::testThat]
biodb.DEBUG[2022-04-12 16:25:54.435][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2022-04-12 16:25:54.451][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:54.451][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2022-04-12 16:25:54.451][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:54.451][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2022-04-12 16:25:54.451][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:54.451][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:54.451][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2022-04-12 16:25:54.467][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:54.467][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.INFO [2022-04-12 16:25:54.467][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-04-12 16:25:54.467][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2022-04-12 16:25:54.467][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2022-04-12 16:25:54.467][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-04-12 16:25:54.467][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:54.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:54.467][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.467][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-04-12 16:25:54.482][biodb::testContext]
biodb.INFO [2022-04-12 16:25:54.482][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 16:25:54.482][biodb::testContext] Test context - Non regression tests
biodb.INFO [2022-04-12 16:25:54.482][biodb::testContext] ********************************************************************************
biodb.INFO [2022-04-12 16:25:54.482][biodb::testContext]
biodb.INFO [2022-04-12 16:25:54.498][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-04-12 16:25:54.498][self$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-04-12 16:25:54.498][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 16:25:54.498][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-04-12 16:25:54.498][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-04-12 16:25:54.498][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.513][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-04-12 16:25:54.513][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-04-12 16:25:54.513][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.513][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-04-12 16:25:54.513][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-04-12 16:25:54.513][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.513][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-04-12 16:25:54.513][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-04-12 16:25:54.513][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-04-12 16:25:54.513][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.529][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-04-12 16:25:54.529][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-04-12 16:25:54.529][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-04-12 16:25:54.529][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.529][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-04-12 16:25:54.529][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-04-12 16:25:54.529][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.529][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-04-12 16:25:54.529][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-04-12 16:25:54.529][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-04-12 16:25:54.529][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.545][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-04-12 16:25:54.545][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-04-12 16:25:54.545][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.545][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-04-12 16:25:54.545][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-04-12 16:25:54.545][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-04-12 16:25:54.545][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.545][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-04-12 16:25:54.545][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-04-12 16:25:54.560][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-04-12 16:25:54.560][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-04-12 16:25:54.560][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-04-12 16:25:54.560][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-04-12 16:25:54.560][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.560][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-04-12 16:25:54.560][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-04-12 16:25:54.560][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.560][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-04-12 16:25:54.560][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-04-12 16:25:54.560][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.576][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-04-12 16:25:54.576][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-04-12 16:25:54.576][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.576][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-04-12 16:25:54.576][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-04-12 16:25:54.576][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.576][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-04-12 16:25:54.576][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-04-12 16:25:54.576][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.592][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-04-12 16:25:54.592][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-04-12 16:25:54.592][self$set] Set key svn.binary.path to "C:\PROGRA~1\TORTOI~1\bin\svn.exe".
biodb.DEBUG[2022-04-12 16:25:54.592][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.592][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-04-12 16:25:54.592][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-04-12 16:25:54.592][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-04-12 16:25:54.592][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.592][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-04-12 16:25:54.607][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:54.607][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-04-12 16:25:54.607][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:54.607][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:54.607][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:54.607][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:54.607][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:54.607][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 16:25:54.607][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 16:25:54.607][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:54.607][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:54.607][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-04-12 16:25:54.607][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:54.623][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:54.623][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:54.623][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 16:25:54.623][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 16:25:54.623][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 16:25:54.623][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 16:25:54.623][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 16:25:54.623][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 16:25:54.623][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:54.623][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:54.623][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:54.623][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:54.623][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:54.623][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:54.623][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:54.623][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:54.623][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:54.623][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:54.623][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:54.638][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-04-12 16:25:54.638][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:54.638][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 16:25:54.638][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:54.638][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:54.638][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:54.638][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:54.638][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:54.638][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 16:25:54.638][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 16:25:54.638][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:54.638][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:54.638][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-04-12 16:25:54.654][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:54.654][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:54.654][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:54.654][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 16:25:54.654][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 16:25:54.654][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 16:25:54.654][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-04-12 16:25:54.654][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-04-12 16:25:54.654][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 16:25:54.654][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:54.654][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:54.654][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:54.654][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:54.654][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:54.654][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:54.654][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:54.654][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:54.654][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:54.654][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:54.670][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:54.670][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-04-12 16:25:54.670][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:54.670][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-04-12 16:25:54.670][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:54.670][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:54.670][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:54.670][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:54.670][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:54.670][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 16:25:54.670][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-04-12 16:25:54.670][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:54.670][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:54.685][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-04-12 16:25:54.685][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:54.685][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:54.685][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:54.685][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:54.685][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 16:25:54.685][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:54.685][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:54.685][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:54.685][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:54.685][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:54.685][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:54.685][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:54.685][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:54.685][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:54.701][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:54.701][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:54.701][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-04-12 16:25:54.701][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:54.701][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-04-12 16:25:54.701][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:54.701][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:54.701][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:54.701][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:54.701][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:54.701][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-04-12 16:25:54.701][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-04-12 16:25:54.701][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:54.717][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:54.717][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-04-12 16:25:54.717][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:54.717][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:54.717][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:54.717][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:54.717][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-04-12 16:25:54.717][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:54.717][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:54.717][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:54.717][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:54.717][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:54.732][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:54.732][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:54.732][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:54.732][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:54.732][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:54.732][self$setPropertyValue]
biodb.DEBUG[2022-04-12 16:25:54.732][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 16:25:54.732][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.732][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.732][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.748][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.748][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.748][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.779][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.779][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.779][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.795][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.795][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.795][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.795][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.810][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.810][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.810][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-04-12 16:25:54.810][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-04-12 16:25:54.826][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-04-12 16:25:54.826][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-04-12 16:25:54.826][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-12 16:25:54.826][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-04-12 16:25:54.826][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-04-12 16:25:54.826][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-04-12 16:25:54.826][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-04-12 16:25:54.826][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-04-12 16:25:54.826][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-12 16:25:54.826][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-04-12 16:25:54.826][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-04-12 16:25:54.842][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-04-12 16:25:54.842][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-04-12 16:25:54.842][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-04-12 16:25:54.842][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-04-12 16:25:54.842][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-04-12 16:25:54.842][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-12 16:25:54.842][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-04-12 16:25:54.842][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-04-12 16:25:54.842][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-04-12 16:25:54.842][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-04-12 16:25:54.857][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-04-12 16:25:54.857][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-04-12 16:25:54.857][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-04-12 16:25:54.857][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-04-12 16:25:54.857][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-04-12 16:25:54.857][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-04-12 16:25:54.857][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-04-12 16:25:54.857][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-04-12 16:25:54.857][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-04-12 16:25:54.857][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-04-12 16:25:54.857][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-04-12 16:25:54.873][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-04-12 16:25:54.873][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-04-12 16:25:54.873][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-04-12 16:25:54.873][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-04-12 16:25:54.873][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-04-12 16:25:54.873][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-04-12 16:25:54.873][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-04-12 16:25:54.873][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-04-12 16:25:54.873][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-04-12 16:25:54.873][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-04-12 16:25:54.888][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-04-12 16:25:54.888][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-04-12 16:25:54.888][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-04-12 16:25:54.888][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-04-12 16:25:54.888][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-04-12 16:25:54.888][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-04-12 16:25:54.888][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-04-12 16:25:54.888][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-04-12 16:25:54.888][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-04-12 16:25:54.888][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-04-12 16:25:54.888][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-04-12 16:25:54.904][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-04-12 16:25:54.904][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-04-12 16:25:54.904][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-04-12 16:25:54.904][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-04-12 16:25:54.904][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-04-12 16:25:54.904][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-04-12 16:25:54.904][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-04-12 16:25:54.904][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-04-12 16:25:54.904][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-04-12 16:25:54.920][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-04-12 16:25:54.920][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-04-12 16:25:54.920][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-12 16:25:54.920][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-12 16:25:54.920][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-04-12 16:25:54.920][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-04-12 16:25:54.920][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-04-12 16:25:54.920][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-04-12 16:25:54.920][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-04-12 16:25:54.920][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-04-12 16:25:54.935][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-04-12 16:25:54.935][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-04-12 16:25:54.935][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-04-12 16:25:54.935][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-04-12 16:25:54.935][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-04-12 16:25:54.935][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-04-12 16:25:54.935][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-04-12 16:25:54.935][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-04-12 16:25:54.935][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-04-12 16:25:54.951][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-04-12 16:25:54.951][initialize] This is biodb version 1.2.2.
biodb.DEBUG[2022-04-12 16:25:54.951][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-04-12 16:25:54.951][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.951][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:54.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:54.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.967][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:54.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:54.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.967][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:54.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:54.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.967][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:54.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:54.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:54.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:54.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:54.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:54.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:54.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:54.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:54.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:54.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:54.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:54.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:54.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:54.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:54.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:55.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:55.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:55.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:55.013][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:55.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:55.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:55.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:55.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:55.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:55.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:55.013][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:55.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:55.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:55.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:55.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:55.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:55.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:55.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:55.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:55.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:55.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:55.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:55.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:55.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:55.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:55.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:55.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:55.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:55.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:55.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:55.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:55.045][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:55.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:55.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:55.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:55.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:55.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:55.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:55.045][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:55.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:55.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:55.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:55.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:55.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:55.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:55.060][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:55.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:55.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:55.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:55.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:55.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:55.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:55.060][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:55.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:55.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:55.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:55.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:55.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:55.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:55.076][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-04-12 16:25:55.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:55.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:55.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:55.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:55.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:55.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-04-12 16:25:55.076][biodb$loadDefinitions] Load definitions from file "C:/Users/biocbuild/bbs-3.14-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2022-04-12 16:25:55.076][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2022-04-12 16:25:55.076][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:55.092][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-04-12 16:25:55.092][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:55.092][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-04-12 16:25:55.092][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:55.092][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-04-12 16:25:55.092][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:55.092][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2022-04-12 16:25:55.092][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-04-12 16:25:55.092][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-04-12 16:25:55.092][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:55.092][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2022-04-12 16:25:55.092][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-04-12 16:25:55.092][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2022-04-12 16:25:55.092][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2022-04-12 16:25:55.092][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2022-04-12 16:25:55.092][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2022-04-12 16:25:55.092][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2022-04-12 16:25:55.092][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2022-04-12 16:25:55.092][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2022-04-12 16:25:55.092][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2022-04-12 16:25:55.092][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2022-04-12 16:25:55.092][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2022-04-12 16:25:55.092][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2022-04-12 16:25:55.092][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-04-12 16:25:55.092][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-04-12 16:25:55.092][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-04-12 16:25:55.092][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-04-12 16:25:55.107][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-04-12 16:25:55.107][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:55.107][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:55.107][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-04-12 16:25:55.107][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-04-12 16:25:55.107][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-04-12 16:25:55.107][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-04-12 16:25:55.107][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-04-12 16:25:55.107][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2022-04-12 16:25:55.107][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-04-12 16:25:55.107][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-04-12 16:25:55.107][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-04-12 16:25:55.107][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2022-04-12 16:25:55.107][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2022-04-12 16:25:55.107][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-04-12 16:25:55.123][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-04-12 16:25:55.123][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2022-04-12 16:25:55.123][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-04-12 16:25:55.123][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-04-12 16:25:55.123][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-04-12 16:25:55.123][super$initialize] Initialize connector chebi.
biodb.DEBUG[2022-04-12 16:25:55.123][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2022-04-12 16:25:55.123][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2022-04-12 16:25:55.123][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2022-04-12 16:25:55.123][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-04-12 16:25:55.138][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-04-12 16:25:55.138][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2022-04-12 16:25:55.138][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2022-04-12 16:25:55.138][biodb::testThat]
biodb.INFO [2022-04-12 16:25:55.138][biodb::testThat] Running test function test.chebi.encoding.issue.in.xml (" ChEBI encoding issue in XML is handled. ").
biodb.INFO [2022-04-12 16:25:55.138][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-04-12 16:25:55.138][biodb::testThat]
biodb.DEBUG[2022-04-12 16:25:55.138][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2022-04-12 16:25:55.154][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:55.154][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2022-04-12 16:25:55.154][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:55.154][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2022-04-12 16:25:55.154][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-04-12 16:25:55.154][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-04-12 16:25:55.154][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2022-04-12 16:25:55.154][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:55.170][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.DEBUG[2022-04-12 16:25:55.170][private$loadEntries] Creating entries from ids [1]: "2571".
biodb.DEBUG[2022-04-12 16:25:55.170][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-04-12 16:25:55.170][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2571".
biodb.TRACE[2022-04-12 16:25:55.170][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-04-12 16:25:55.170][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2571.xml".
biodb.DEBUG[2022-04-12 16:25:55.170][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-04-12 16:25:55.201][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-04-12 16:25:55.201][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-04-12 16:25:55.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-04-12 16:25:55.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:55.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:55.201][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:55.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:55.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:55.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-04-12 16:25:55.201][ef$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:55.217][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:55.217][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:55.217][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:55.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:55.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:55.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:55.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:55.232][ef$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:55.232][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:55.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:55.232][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:55.232][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-04-12 16:25:55.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-04-12 16:25:55.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:55.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:55.248][ef$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:55.248][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:55.248][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:55.248][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:55.248][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-04-12 16:25:55.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-04-12 16:25:55.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:55.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:55.263][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-04-12 16:25:55.263][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-04-12 16:25:55.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:55.263][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:55.263][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-04-12 16:25:55.263][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-04-12 16:25:55.263][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:55.279][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:55.279][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:55.279][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:55.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:55.279][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:55.279][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:55.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-04-12 16:25:55.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:55.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:55.295][ef$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:55.295][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:55.295][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:55.295][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:55.295][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-04-12 16:25:55.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-04-12 16:25:55.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:55.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:55.310][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:55.310][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:55.310][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:55.310][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:55.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:55.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-04-12 16:25:55.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:55.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:55.326][ef$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:55.326][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:55.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:55.326][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:55.342][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-04-12 16:25:55.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-04-12 16:25:55.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:55.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:55.342][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:55.357][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:55.357][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:55.357][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:55.357][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-04-12 16:25:55.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-04-12 16:25:55.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:55.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:55.373][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:55.373][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:55.373][ef$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:55.373][ef$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:55.373][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-04-12 16:25:55.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-04-12 16:25:55.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:55.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:55.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:55.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:55.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:55.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:55.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:55.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:55.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:55.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:55.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:55.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:55.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:55.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:55.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-04-12 16:25:55.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-04-12 16:25:55.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:55.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:55.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:55.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:55.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:55.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:55.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:55.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:55.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:55.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:55.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:55.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:55.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:55.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:55.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:55.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:55.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:55.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:55.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:55.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:55.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:55.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-04-12 16:25:55.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-04-12 16:25:55.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-04-12 16:25:55.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-04-12 16:25:55.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-04-12 16:25:55.451][self$createEntryFromContent] Accession numbers: 2571.
biodb.INFO [2022-04-12 16:25:55.451][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-04-12 16:25:55.451][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2022-04-12 16:25:55.451][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2022-04-12 16:25:55.451][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-04-12 16:25:55.451][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-04-12 16:25:55.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-04-12 16:25:55.451][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-04-12 16:25:55.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-04-12 16:25:55.451][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-04-12 16:25:55.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 332 ]
>
> proc.time()
user system elapsed
19.78 0.64 23.20
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biodbChebi.Rcheck/examples_i386/biodbChebi-Ex.timings
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biodbChebi.Rcheck/examples_x64/biodbChebi-Ex.timings
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