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This page was generated on 2022-01-21 13:07:26 -0500 (Fri, 21 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4329
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4079
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4140
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for biodbChebi on machv2


To the developers/maintainers of the biodbChebi package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbChebi.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 176/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biodbChebi 1.0.1  (landing page)
Pierrick Roger
Snapshot Date: 2022-01-20 01:55:04 -0500 (Thu, 20 Jan 2022)
git_url: https://git.bioconductor.org/packages/biodbChebi
git_branch: RELEASE_3_14
git_last_commit: 35326c0
git_last_commit_date: 2021-10-27 06:00:18 -0500 (Wed, 27 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: biodbChebi
Version: 1.0.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbChebi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbChebi_1.0.1.tar.gz
StartedAt: 2022-01-20 10:34:43 -0500 (Thu, 20 Jan 2022)
EndedAt: 2022-01-20 10:36:48 -0500 (Thu, 20 Jan 2022)
EllapsedTime: 125.4 seconds
RetCode: 0
Status:   OK  
CheckDir: biodbChebi.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbChebi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbChebi_1.0.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.14-bioc/meat/biodbChebi.Rcheck’
* using R version 4.1.2 (2021-11-01)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.0.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
           user system elapsed
ChebiConn 3.933  0.646    5.56
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

biodbChebi.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodbChebi
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’
* installing *source* package ‘biodbChebi’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbChebi)

Tests output

biodbChebi.Rcheck/tests/testthat.Rout


R version 4.1.2 (2021-11-01) -- "Bird Hippie"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2022-01-20 10:35:51.536][biodb::testContext] 
biodb.INFO [2022-01-20 10:35:51.553][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-20 10:35:51.555][biodb::testContext] Test context - Generic tests
biodb.INFO [2022-01-20 10:35:51.556][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-20 10:35:51.558][biodb::testContext] 
biodb.INFO [2022-01-20 10:35:51.589][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-01-20 10:35:51.593][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2022-01-20 10:35:51.610][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-20 10:35:51.612][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-01-20 10:35:51.614][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-01-20 10:35:51.615][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:51.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:51.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:51.619][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-01-20 10:35:51.662][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-01-20 10:35:51.664][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:51.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:51.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:51.668][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-01-20 10:35:51.671][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-01-20 10:35:51.672][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:51.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:51.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:51.676][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-01-20 10:35:51.677][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-01-20 10:35:51.679][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-01-20 10:35:51.681][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:51.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:51.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:51.687][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-01-20 10:35:51.689][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-01-20 10:35:51.692][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-01-20 10:35:51.693][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:51.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:51.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:51.699][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-01-20 10:35:51.701][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-01-20 10:35:51.703][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:51.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:51.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:51.708][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-01-20 10:35:51.710][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-01-20 10:35:51.713][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-01-20 10:35:51.715][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:51.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:51.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:51.721][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-01-20 10:35:51.723][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-01-20 10:35:51.725][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:51.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:51.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:51.730][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-01-20 10:35:51.733][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-01-20 10:35:51.735][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-01-20 10:35:51.737][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:51.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:51.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:51.742][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-01-20 10:35:51.745][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-01-20 10:35:51.747][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-01-20 10:35:51.749][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-01-20 10:35:51.751][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-01-20 10:35:51.753][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-01-20 10:35:51.755][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:51.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:51.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:51.761][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-01-20 10:35:51.764][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-01-20 10:35:51.766][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:51.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:51.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:51.772][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-01-20 10:35:51.774][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-01-20 10:35:51.776][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:51.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:51.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:51.782][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-01-20 10:35:51.783][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-01-20 10:35:51.784][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:51.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:51.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:51.788][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-01-20 10:35:51.789][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-01-20 10:35:51.791][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:51.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:51.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:51.797][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-01-20 10:35:51.799][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-01-20 10:35:51.801][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:51.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:51.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:51.807][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-01-20 10:35:51.810][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-01-20 10:35:51.820][self$set] Set key svn.binary.path to "/usr/bin/svn".
biodb.DEBUG[2022-01-20 10:35:51.823][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:51.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:51.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:51.829][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-01-20 10:35:51.831][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-01-20 10:35:51.834][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-01-20 10:35:51.835][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:51.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:51.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:51.846][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-01-20 10:35:51.929][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-20 10:35:51.952][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-01-20 10:35:51.955][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 10:35:51.957][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 10:35:51.959][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 10:35:51.961][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 10:35:51.962][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 10:35:51.964][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 10:35:51.967][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-20 10:35:51.969][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 10:35:51.971][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-20 10:35:51.972][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-01-20 10:35:51.974][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 10:35:51.976][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:35:51.978][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 10:35:51.980][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-20 10:35:51.980][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 10:35:51.980][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-20 10:35:51.980][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-20 10:35:51.980][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-20 10:35:51.982][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 10:35:51.984][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 10:35:51.986][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 10:35:51.987][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 10:35:51.988][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 10:35:51.989][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 10:35:51.991][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 10:35:51.992][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:35:51.993][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 10:35:51.994][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 10:35:51.995][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 10:35:51.996][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:35:51.998][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-01-20 10:35:52.002][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-20 10:35:52.004][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-01-20 10:35:52.006][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 10:35:52.008][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 10:35:52.009][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 10:35:52.011][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 10:35:52.013][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 10:35:52.015][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 10:35:52.017][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-20 10:35:52.019][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 10:35:52.021][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-20 10:35:52.023][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-01-20 10:35:52.025][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 10:35:52.027][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:35:52.028][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 10:35:52.030][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-20 10:35:52.030][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 10:35:52.030][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-20 10:35:52.030][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-20 10:35:52.030][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-20 10:35:52.031][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 10:35:52.033][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 10:35:52.035][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 10:35:52.036][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 10:35:52.038][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 10:35:52.039][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 10:35:52.041][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 10:35:52.042][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:35:52.043][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 10:35:52.045][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 10:35:52.046][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 10:35:52.048][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:35:52.050][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-01-20 10:35:52.053][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-20 10:35:52.055][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-01-20 10:35:52.056][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 10:35:52.057][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 10:35:52.059][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 10:35:52.060][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 10:35:52.062][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 10:35:52.064][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 10:35:52.065][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-20 10:35:52.067][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 10:35:52.069][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-20 10:35:52.071][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-01-20 10:35:52.072][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 10:35:52.074][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:35:52.076][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 10:35:52.077][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:35:52.079][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 10:35:52.080][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 10:35:52.081][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 10:35:52.082][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 10:35:52.085][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 10:35:52.086][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 10:35:52.088][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 10:35:52.090][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:35:52.092][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 10:35:52.094][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 10:35:52.095][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 10:35:52.097][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:35:52.098][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-01-20 10:35:52.101][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-20 10:35:52.103][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-01-20 10:35:52.105][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 10:35:52.106][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 10:35:52.108][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 10:35:52.110][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 10:35:52.111][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 10:35:52.113][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 10:35:52.114][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-20 10:35:52.116][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 10:35:52.117][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-20 10:35:52.119][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-01-20 10:35:52.121][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 10:35:52.123][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:35:52.125][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 10:35:52.126][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:35:52.127][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 10:35:52.128][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 10:35:52.130][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 10:35:52.132][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 10:35:52.134][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 10:35:52.135][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 10:35:52.137][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 10:35:52.139][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:35:52.140][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 10:35:52.142][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 10:35:52.144][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 10:35:52.145][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:35:52.154][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-20 10:35:52.156][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.159][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:52.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.167][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:52.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.174][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:52.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.179][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:52.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.187][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:52.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.195][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:52.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.202][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:52.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.208][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:52.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.215][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:52.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.224][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:52.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.232][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:52.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.237][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:52.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.244][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:52.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.249][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:52.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.256][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:52.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:52.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.269][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:52.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.274][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-01-20 10:35:52.282][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-01-20 10:35:52.285][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-01-20 10:35:52.288][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-01-20 10:35:52.291][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-01-20 10:35:52.294][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-01-20 10:35:52.297][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-01-20 10:35:52.299][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-01-20 10:35:52.301][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-01-20 10:35:52.304][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-01-20 10:35:52.307][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-01-20 10:35:52.310][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-01-20 10:35:52.313][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-01-20 10:35:52.315][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-01-20 10:35:52.317][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-01-20 10:35:52.320][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-01-20 10:35:52.321][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-01-20 10:35:52.324][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-01-20 10:35:52.326][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-01-20 10:35:52.328][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-01-20 10:35:52.330][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-01-20 10:35:52.340][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-01-20 10:35:52.344][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-01-20 10:35:52.347][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-01-20 10:35:52.350][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-01-20 10:35:52.352][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-01-20 10:35:52.355][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-01-20 10:35:52.358][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-01-20 10:35:52.360][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-01-20 10:35:52.363][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-01-20 10:35:52.366][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-01-20 10:35:52.369][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-01-20 10:35:52.372][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-01-20 10:35:52.374][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-01-20 10:35:52.377][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-01-20 10:35:52.380][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-01-20 10:35:52.383][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-01-20 10:35:52.386][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-01-20 10:35:52.389][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-01-20 10:35:52.392][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-01-20 10:35:52.395][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-01-20 10:35:52.397][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-01-20 10:35:52.400][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-01-20 10:35:52.403][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-01-20 10:35:52.406][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-01-20 10:35:52.409][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-01-20 10:35:52.412][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-01-20 10:35:52.415][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-01-20 10:35:52.418][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-01-20 10:35:52.421][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-01-20 10:35:52.424][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-01-20 10:35:52.426][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-01-20 10:35:52.429][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-01-20 10:35:52.431][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-01-20 10:35:52.434][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-01-20 10:35:52.436][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-01-20 10:35:52.438][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-01-20 10:35:52.440][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-01-20 10:35:52.442][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-01-20 10:35:52.443][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-01-20 10:35:52.445][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-01-20 10:35:52.447][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-01-20 10:35:52.450][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-01-20 10:35:52.452][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-01-20 10:35:52.453][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-01-20 10:35:52.455][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-01-20 10:35:52.457][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-01-20 10:35:52.458][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-01-20 10:35:52.460][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-01-20 10:35:52.462][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-01-20 10:35:52.463][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-01-20 10:35:52.465][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-01-20 10:35:52.466][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-01-20 10:35:52.468][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-01-20 10:35:52.470][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-01-20 10:35:52.471][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-01-20 10:35:52.474][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-01-20 10:35:52.477][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-01-20 10:35:52.480][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-01-20 10:35:52.483][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-01-20 10:35:52.485][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-01-20 10:35:52.487][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-01-20 10:35:52.489][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-01-20 10:35:52.500][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-01-20 10:35:52.502][initialize] This is biodb version 1.2.2.
biodb.DEBUG[2022-01-20 10:35:52.509][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-20 10:35:52.510][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.514][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.526][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:52.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:35:52.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:35:52.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.535][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:52.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:35:52.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:35:52.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.548][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:52.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:35:52.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:35:52.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.561][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:52.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:35:52.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:35:52.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.575][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:52.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:35:52.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:35:52.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.587][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:52.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:35:52.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:35:52.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.599][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:52.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:35:52.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:35:52.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.610][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:52.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:35:52.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:35:52.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.622][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:52.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:35:52.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:35:52.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.633][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:52.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:35:52.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:35:52.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.645][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:52.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:35:52.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:35:52.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:52.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:35:52.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:35:52.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.669][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:52.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:35:52.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:35:52.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:52.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:35:52.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:35:52.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.694][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:52.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:35:52.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:35:52.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.706][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:52.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:35:52.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:35:52.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.719][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:35:52.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:35:52.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:35:52.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:52.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:52.732][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodbChebi/definitions.yml".
biodb.DEBUG[2022-01-20 10:35:52.752][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2022-01-20 10:35:52.757][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-20 10:35:52.759][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-01-20 10:35:52.761][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 10:35:52.763][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 10:35:52.765][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 10:35:52.767][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 10:35:52.769][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-01-20 10:35:52.772][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2022-01-20 10:35:52.774][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-01-20 10:35:52.776][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 10:35:52.778][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-20 10:35:52.781][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2022-01-20 10:35:52.783][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 10:35:52.785][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2022-01-20 10:35:52.785][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2022-01-20 10:35:52.785][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2022-01-20 10:35:52.785][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2022-01-20 10:35:52.785][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2022-01-20 10:35:52.785][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2022-01-20 10:35:52.785][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2022-01-20 10:35:52.785][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2022-01-20 10:35:52.785][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2022-01-20 10:35:52.785][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2022-01-20 10:35:52.785][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2022-01-20 10:35:52.787][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-01-20 10:35:52.789][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-20 10:35:52.789][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 10:35:52.789][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-20 10:35:52.790][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-01-20 10:35:52.799][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 10:35:52.801][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 10:35:52.803][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 10:35:52.805][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 10:35:52.806][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 10:35:52.808][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 10:35:52.810][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-01-20 10:35:52.810][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2022-01-20 10:35:52.813][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 10:35:52.814][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 10:35:52.816][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-01-20 10:35:52.818][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2022-01-20 10:35:52.818][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2022-01-20 10:35:52.831][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-01-20 10:35:52.834][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-01-20 10:35:52.837][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2022-01-20 10:35:52.840][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-01-20 10:35:52.843][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-01-20 10:35:52.846][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-01-20 10:35:52.882][super$initialize] Initialize connector chebi.
biodb.DEBUG[2022-01-20 10:35:52.884][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2022-01-20 10:35:52.891][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2022-01-20 10:35:52.900][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2022-01-20 10:35:52.908][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-01-20 10:35:52.910][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-01-20 10:35:52.912][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2022-01-20 10:35:52.914][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2022-01-20 10:35:52.952][biodb::testThat] 
biodb.INFO [2022-01-20 10:35:52.954][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2022-01-20 10:35:52.956][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 10:35:52.958][biodb::testThat] 
biodb.TRACE[2022-01-20 10:35:52.965][loadFileContents] Loaded 1 files from cache: [1]: "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2022-01-20 10:35:52.975][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-20 10:35:52.978][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-20 10:35:52.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:35:52.994][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:35:52.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:35:52.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:52.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:52.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:53.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:35:53.016][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:35:53.018][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:35:53.021][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.022][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:35:53.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:35:53.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.066][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:35:53.069][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:35:53.071][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.072][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.128][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:35:53.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:35:53.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.145][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:35:53.147][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:35:53.149][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.151][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.154][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:35:53.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:35:53.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.170][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:35:53.173][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:35:53.174][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.176][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.179][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:35:53.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:35:53.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.195][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:35:53.197][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:35:53.199][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.201][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.204][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:35:53.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:35:53.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.217][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:35:53.219][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:35:53.220][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.221][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.223][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:35:53.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:35:53.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.232][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:35:53.234][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:53.235][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.236][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.237][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:35:53.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:53.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.247][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:35:53.249][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:35:53.250][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.251][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:35:53.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:35:53.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.270][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:35:53.273][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:35:53.289][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.291][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.293][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:35:53.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:35:53.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.310][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:35:53.313][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:35:53.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.318][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.321][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:35:53.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:35:53.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.336][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:35:53.338][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:35:53.340][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.342][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.345][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:35:53.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:35:53.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:35:53.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:35:53.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:35:53.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:35:53.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:35:53.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:35:53.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:35:53.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:35:53.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:35:53.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:35:53.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:35:53.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:35:53.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:35:53.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:35:53.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:35:53.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:35:53.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:35:53.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:35:53.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:35:53.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:35:53.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:35:53.501][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2022-01-20 10:35:53.514][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:35:53.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:35:53.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.523][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:35:53.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:35:53.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:35:53.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:35:53.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:35:53.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:35:53.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:53.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:53.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:53.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:53.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.604][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 10:35:53.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 10:35:53.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.612][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 10:35:53.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 10:35:53.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.620][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-20 10:35:53.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-20 10:35:53.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.627][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 10:35:53.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 10:35:53.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:35:53.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:35:53.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:35:53.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:35:53.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:35:53.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:35:53.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:35:53.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:35:53.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:35:53.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:35:53.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:35:53.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:35:53.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:35:53.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:35:53.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:35:53.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:35:53.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:35:53.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:35:53.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:35:53.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:35:53.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:35:53.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:35:53.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:35:53.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:35:53.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:35:53.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:35:53.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:35:53.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:35:53.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.821][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:35:53.823][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:35:53.824][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.826][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:35:53.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:35:53.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:35:53.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:35:53.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:35:53.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:35:53.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:35:53.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:35:53.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.865][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:35:53.866][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:35:53.867][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.868][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:35:53.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:35:53.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.883][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:35:53.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:35:53.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.890][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:35:53.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:35:53.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.896][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:35:53.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:35:53.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.905][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:35:53.907][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:35:53.909][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.911][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.913][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:35:53.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:35:53.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.927][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:35:53.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:35:53.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.933][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:35:53.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:35:53.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.941][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:35:53.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:35:53.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.949][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:35:53.951][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:35:53.952][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.954][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.955][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:35:53.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:35:53.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.973][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:53.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:53.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:53.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:53.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:53.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:53.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.990][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:53.992][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:53.994][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:53.996][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:53.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:54.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:54.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:35:54.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:35:54.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:35:54.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:35:54.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:35:54.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:35:54.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.040][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:35:54.042][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:35:54.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.046][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:35:54.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:35:54.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.066][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:35:54.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:35:54.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.075][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:35:54.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:35:54.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.080][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:35:54.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:35:54.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.088][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:35:54.097][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:35:54.099][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.100][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.101][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:35:54.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:35:54.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.116][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-01-20 10:35:54.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:35:54.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.125][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-01-20 10:35:54.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:35:54.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.132][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-01-20 10:35:54.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:35:54.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.140][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-01-20 10:35:54.142][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:35:54.144][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.146][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.148][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2022-01-20 10:35:54.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:35:54.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.166][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:35:54.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:35:54.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.174][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:35:54.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:35:54.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.181][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:35:54.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:35:54.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.187][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:35:54.189][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:35:54.191][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.193][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.195][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:35:54.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:35:54.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.213][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:35:54.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:35:54.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.218][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:35:54.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:35:54.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.226][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:35:54.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:35:54.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.234][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:35:54.236][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:35:54.238][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.240][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.242][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:35:54.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:35:54.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:35:54.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:35:54.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.267][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:35:54.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:35:54.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:35:54.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:35:54.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.283][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:35:54.286][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:35:54.288][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.290][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:35:54.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:35:54.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:35:54.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:35:54.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.319][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:35:54.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:35:54.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.328][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:35:54.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:35:54.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.336][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:35:54.338][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:35:54.340][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.342][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:35:54.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:35:54.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.363][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:35:54.365][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:35:54.367][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.369][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.376][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:35:54.378][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:35:54.381][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.383][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.389][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:35:54.392][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:35:54.394][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.395][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.400][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:35:54.402][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:35:54.404][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.405][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.411][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:35:54.413][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:35:54.414][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.416][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.421][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:35:54.423][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:35:54.425][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.426][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.432][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:54.434][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:54.435][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.437][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.442][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:35:54.444][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:35:54.446][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.447][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.453][ef$get] Asked field names are: n.stars.
biodb.TRACE[2022-01-20 10:35:54.455][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:35:54.456][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.458][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.464][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:35:54.467][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:35:54.469][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.470][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.477][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:35:54.479][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:35:54.481][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.483][ef$get] fields variable is a list.
biodb.INFO [2022-01-20 10:35:54.491][biodb::testThat] 
biodb.INFO [2022-01-20 10:35:54.493][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2022-01-20 10:35:54.495][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 10:35:54.497][biodb::testThat] 
biodb.DEBUG[2022-01-20 10:35:54.531][private$loadEntries] Creating entries from ids [1]: "15440".
biodb.DEBUG[2022-01-20 10:35:54.546][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-20 10:35:54.553][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15440".
biodb.TRACE[2022-01-20 10:35:54.556][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:35:54.559][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml".
biodb.DEBUG[2022-01-20 10:35:54.561][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-20 10:35:54.631][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-20 10:35:54.633][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-20 10:35:54.636][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:35:54.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:35:54.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:35:54.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:54.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:54.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:54.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:35:54.652][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:35:54.654][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:35:54.656][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.657][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:35:54.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:35:54.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.712][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:35:54.714][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:35:54.716][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.718][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.721][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:35:54.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:35:54.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.740][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:35:54.742][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:35:54.744][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.746][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.748][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:35:54.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:35:54.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.760][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:35:54.762][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:35:54.764][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.766][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:35:54.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:35:54.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.783][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:35:54.785][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:35:54.787][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.789][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.792][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:35:54.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:35:54.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.805][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:35:54.806][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:35:54.808][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.809][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.811][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:35:54.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:35:54.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.827][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:35:54.829][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:54.831][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.833][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.835][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:35:54.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:54.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.850][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:35:54.852][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:35:54.854][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.856][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:35:54.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:35:54.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.873][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:35:54.875][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:35:54.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.879][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.882][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:35:54.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:35:54.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.895][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:35:54.897][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:35:54.898][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.900][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.902][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:35:54.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:35:54.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.914][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:35:54.916][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:35:54.917][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.919][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.921][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:35:54.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:35:54.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:35:54.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:35:54.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:35:54.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:35:54.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:35:54.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:35:54.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:35:54.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:35:54.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:54.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:54.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:35:55.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:35:55.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:55.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:35:55.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:35:55.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:55.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:35:55.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:35:55.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:55.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:35:55.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:35:55.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:55.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:35:55.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:35:55.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:55.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:35:55.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:35:55.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:35:55.047][self$createEntryFromContent] Accession numbers: 15440.
biodb.TRACE[2022-01-20 10:35:55.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-01-20 10:35:55.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-01-20 10:35:55.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:55.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-01-20 10:35:55.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-01-20 10:35:55.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:55.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-01-20 10:35:55.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-01-20 10:35:55.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-01-20 10:35:55.076][biodb::testThat] 
biodb.INFO [2022-01-20 10:35:55.078][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2022-01-20 10:35:55.080][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 10:35:55.082][biodb::testThat] 
biodb.TRACE[2022-01-20 10:35:55.087][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:35:55.089][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:35:55.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.093][ef$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:35:55.096][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2022-01-20 10:35:55.138][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:35:55.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:35:55.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:55.146][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:35:55.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:35:55.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:55.154][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:35:55.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:35:55.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:35:55.165][function(conn, opt)] With value "squalene".
biodb.DEBUG[2022-01-20 10:35:55.180][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2022-01-20 10:35:55.207][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:35:55.240][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2022-01-20 10:35:55.241][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:35:55.243][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2022-01-20 10:35:55.282][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:35:55.288][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:35:55.291][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-01-20 10:35:55.293][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:35:55.296][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-01-20 10:35:55.299][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2022-01-20 10:35:55.311][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:35:55.313][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:35:55.315][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.317][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:55.319][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:55.322][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:55.330][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.332][ef$get] fields variable is a list.
biodb.INFO [2022-01-20 10:35:55.335][biodb::testThat] 
biodb.INFO [2022-01-20 10:35:55.337][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2022-01-20 10:35:55.339][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 10:35:55.341][biodb::testThat] 
biodb.TRACE[2022-01-20 10:35:55.365][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:35:55.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:35:55.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:55.371][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:35:55.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:35:55.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:55.379][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:35:55.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:35:55.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:35:55.492][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:35:55.498][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:35:55.501][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-01-20 10:35:55.504][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:35:55.507][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2022-01-20 10:35:55.527][biodb::testThat] 
biodb.INFO [2022-01-20 10:35:55.529][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2022-01-20 10:35:55.531][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 10:35:55.533][biodb::testThat] 
biodb.TRACE[2022-01-20 10:35:55.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:35:55.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:35:55.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:55.582][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:35:55.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:35:55.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:55.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:35:55.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:35:55.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:55.600][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:35:55.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:35:55.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:55.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:55.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:55.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:55.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:55.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:55.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:55.624][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 10:35:55.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 10:35:55.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:55.630][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 10:35:55.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 10:35:55.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:55.639][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-20 10:35:55.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-20 10:35:55.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:55.647][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 10:35:55.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 10:35:55.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:55.704][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:35:55.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:35:55.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:55.709][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:35:55.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:35:55.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:55.714][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:35:55.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:35:55.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:55.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:35:55.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:35:55.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:55.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:55.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:55.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:55.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:55.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:55.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:55.734][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 10:35:55.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 10:35:55.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:55.739][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-01-20 10:35:55.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-01-20 10:35:55.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:55.745][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-01-20 10:35:55.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-01-20 10:35:55.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:55.751][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-01-20 10:35:55.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-01-20 10:35:55.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:55.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-01-20 10:35:55.762][biodb::testThat] 
biodb.INFO [2022-01-20 10:35:55.764][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2022-01-20 10:35:55.766][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 10:35:55.768][biodb::testThat] 
biodb.INFO [2022-01-20 10:35:55.777][biodb::testThat] 
biodb.INFO [2022-01-20 10:35:55.779][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2022-01-20 10:35:55.781][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 10:35:55.782][biodb::testThat] 
biodb.INFO [2022-01-20 10:35:55.787][biodb::testThat] 
biodb.INFO [2022-01-20 10:35:55.789][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2022-01-20 10:35:55.790][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 10:35:55.791][biodb::testThat] 
biodb.DEBUG[2022-01-20 10:35:55.795][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2022-01-20 10:35:56.672][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2022-01-20 10:35:57.790][biodb::testThat] 
biodb.INFO [2022-01-20 10:35:57.792][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2022-01-20 10:35:57.794][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 10:35:57.796][biodb::testThat] 
biodb.DEBUG[2022-01-20 10:35:58.321][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.INFO [2022-01-20 10:35:58.841][biodb::testThat] 
biodb.INFO [2022-01-20 10:35:58.843][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2022-01-20 10:35:58.845][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 10:35:58.847][biodb::testThat] 
biodb.TRACE[2022-01-20 10:35:58.856][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:35:58.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:35:58.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:58.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:58.864][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:35:58.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:35:58.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:58.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:58.873][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:35:58.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:35:58.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:58.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:35:58.927][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:35:58.933][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:35:58.936][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-01-20 10:35:58.939][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:35:58.942][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-01-20 10:35:58.956][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:35:58.962][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:35:58.965][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-01-20 10:35:58.967][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:35:58.970][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2022-01-20 10:35:58.985][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-01-20 10:35:58.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-01-20 10:35:58.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:58.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:58.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:58.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:58.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:59.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:59.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:59.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:59.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:59.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:59.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:59.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:59.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:59.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:59.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:59.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:59.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:59.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:59.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:59.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:59.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:59.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:35:59.062][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:35:59.068][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:35:59.071][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-01-20 10:35:59.074][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:35:59.077][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-01-20 10:35:59.081][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:35:59.085][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:35:59.087][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-01-20 10:35:59.089][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:35:59.092][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-01-20 10:35:59.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:35:59.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:35:59.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:35:59.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:59.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:59.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:59.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:35:59.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:59.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:59.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:59.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:59.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:59.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:59.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:59.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:59.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:59.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:59.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:59.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:35:59.136][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:35:59.141][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:35:59.143][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-01-20 10:35:59.146][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:35:59.149][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-01-20 10:35:59.193][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:35:59.200][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:35:59.202][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-01-20 10:35:59.204][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:35:59.207][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-01-20 10:35:59.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:35:59.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:35:59.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:35:59.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:59.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:59.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:59.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:35:59.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:59.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:59.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:59.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:59.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:59.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:59.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:59.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:35:59.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:59.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:35:59.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:35:59.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:35:59.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:35:59.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:35:59.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:35:59.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:59.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:59.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:59.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:59.283][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2022-01-20 10:35:59.392][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-20 10:35:59.396][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2022-01-20 10:35:59.398][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-01-20 10:35:59.401][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-20 10:35:59.403][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-20 10:35:59.405][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-01-20 10:35:59.408][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-20 10:35:59.410][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-20 10:35:59.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:35:59.416][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:35:59.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:35:59.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:35:59.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:35:59.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:35:59.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:35:59.429][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.DEBUG[2022-01-20 10:35:59.435][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-20 10:35:59.437][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-20 10:35:59.440][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747".
biodb.TRACE[2022-01-20 10:35:59.927][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=26747).
biodb.DEBUG[2022-01-20 10:36:00.421][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-01-20 10:36:00.431][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.content"
biodb.TRACE[2022-01-20 10:36:00.475][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/462a35453014388bd90df1c9e4ade520.request"
biodb.TRACE[2022-01-20 10:36:00.484][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml"
biodb.DEBUG[2022-01-20 10:36:00.487][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-20 10:36:00.505][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-20 10:36:00.507][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-20 10:36:00.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:00.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:00.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:00.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:00.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:00.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:00.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:00.527][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:00.530][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:00.532][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:00.534][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:00.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:00.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:00.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:00.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:00.544][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:00.547][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:00.549][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:00.550][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:00.553][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:00.555][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:00.557][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:00.559][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:00.562][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:00.564][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:00.566][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:00.567][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:00.570][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:00.572][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:00.574][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:00.576][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:00.578][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:00.581][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:00.583][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:00.584][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:00.587][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:00.589][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:00.591][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:00.593][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:00.595][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:00.597][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:00.599][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:00.601][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:00.603][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:00.605][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:00.606][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:00.608][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:00.611][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:00.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:00.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:00.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:00.620][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:00.622][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:00.623][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:00.624][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:00.626][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:00.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:00.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:00.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:00.633][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:00.634][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:00.635][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:00.636][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:00.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:00.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:00.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:00.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:00.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:00.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:00.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:00.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:00.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:00.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:00.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:00.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:00.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:00.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:00.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:00.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:00.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:00.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:00.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:00.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:00.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:00.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:00.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:00.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:00.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:00.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:00.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:00.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:00.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:00.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:00.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:00.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:00.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:00.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:00.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:00.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:00.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:00.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:00.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:00.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:00.719][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2022-01-20 10:36:00.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:00.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:00.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:00.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:00.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:00.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:00.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:00.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:00.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:00.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:00.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:00.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:00.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:00.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:00.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:00.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:00.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:00.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:00.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:00.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:00.783][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:00.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:00.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:00.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:00.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:00.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:00.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:00.806][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2022-01-20 10:36:00.808][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-20 10:36:00.812][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2022-01-20 10:36:00.813][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-01-20 10:36:00.815][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-20 10:36:00.817][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-20 10:36:00.819][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-01-20 10:36:00.821][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-20 10:36:00.823][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-20 10:36:00.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:00.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:00.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:00.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:00.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:00.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:00.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:00.854][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.DEBUG[2022-01-20 10:36:00.881][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-20 10:36:00.883][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-20 10:36:00.919][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285".
biodb.TRACE[2022-01-20 10:36:01.574][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=59285).
biodb.DEBUG[2022-01-20 10:36:02.053][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-01-20 10:36:02.063][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.content"
biodb.TRACE[2022-01-20 10:36:02.078][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a390fa120be311b7c431851d8d66d5ac.request"
biodb.TRACE[2022-01-20 10:36:02.091][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml"
biodb.DEBUG[2022-01-20 10:36:02.096][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-20 10:36:02.110][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-20 10:36:02.113][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-20 10:36:02.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:02.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:02.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:02.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:02.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:02.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:02.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:02.130][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:02.132][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:02.134][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:02.136][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:02.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:02.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:02.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:02.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:02.149][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:02.152][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:02.154][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:02.156][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:02.158][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:02.160][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:02.162][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:02.164][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:02.167][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:02.169][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:02.171][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:02.173][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:02.175][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:02.177][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:02.179][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:02.181][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:02.184][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:02.186][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:02.188][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:02.190][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:02.192][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:02.194][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:02.196][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:02.198][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:02.200][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:02.217][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:02.218][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:02.220][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:02.222][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:02.225][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:02.227][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:02.228][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:02.232][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:02.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:02.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:02.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:02.243][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:02.246][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:02.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:02.249][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:02.252][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:02.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:02.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:02.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:02.263][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:02.265][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:02.267][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:02.269][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:02.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:02.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:02.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:02.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:02.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:02.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:02.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:02.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:02.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:02.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:02.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:02.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:02.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:02.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:02.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:02.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:02.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:02.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:02.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:02.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:02.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:02.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:02.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:02.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:02.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:02.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:02.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:02.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:02.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:02.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:02.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:02.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:02.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:02.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:02.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:02.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:02.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:02.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:02.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:02.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:02.353][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2022-01-20 10:36:02.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:02.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:02.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:02.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:02.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:02.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:02.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:02.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:02.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:02.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:02.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:02.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:02.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:02.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:02.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:02.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:02.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:02.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:02.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:02.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:02.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:02.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:02.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:02.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:02.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:02.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:02.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:02.399][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2022-01-20 10:36:02.402][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-20 10:36:02.405][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2022-01-20 10:36:02.408][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-01-20 10:36:02.410][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-20 10:36:02.413][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-20 10:36:02.414][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-01-20 10:36:02.416][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-20 10:36:02.417][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-20 10:36:02.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:02.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:02.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:02.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:02.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:02.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:02.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:02.436][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.DEBUG[2022-01-20 10:36:02.441][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-20 10:36:02.442][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-20 10:36:02.444][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174".
biodb.TRACE[2022-01-20 10:36:02.925][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75174).
biodb.DEBUG[2022-01-20 10:36:03.424][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-01-20 10:36:03.433][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.content"
biodb.TRACE[2022-01-20 10:36:03.449][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/379ec57940c7734782bc4c07c7e15a9b.request"
biodb.TRACE[2022-01-20 10:36:03.463][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml"
biodb.DEBUG[2022-01-20 10:36:03.468][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-20 10:36:03.478][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-20 10:36:03.481][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-20 10:36:03.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:03.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:03.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:03.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:03.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:03.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:03.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:03.515][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:03.518][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:03.520][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:03.521][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:03.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:03.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:03.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:03.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:03.533][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:03.534][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:03.536][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:03.538][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:03.540][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:03.541][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:03.543][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:03.545][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:03.547][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:03.549][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:03.550][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:03.552][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:03.554][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:03.557][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:03.559][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:03.561][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:03.563][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:03.565][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:03.567][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:03.569][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:03.571][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:03.573][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:03.575][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:03.577][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:03.579][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:03.581][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:03.582][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:03.583][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:03.585][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:03.586][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:03.587][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:03.589][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:03.593][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:03.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:03.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:03.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:03.605][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:03.607][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:03.609][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:03.610][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:03.613][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:03.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:03.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:03.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:03.620][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:03.622][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:03.623][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:03.624][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:03.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:03.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:03.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:03.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:03.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:03.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:03.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:03.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:03.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:03.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:03.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:03.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:03.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:03.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:03.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:03.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:03.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:03.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:03.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:03.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:03.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:03.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:03.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:03.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:03.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:03.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:03.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:03.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:03.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:03.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:03.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:03.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:03.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:03.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:03.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:03.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:03.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:03.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:03.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:03.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:03.703][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2022-01-20 10:36:03.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:03.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:03.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:03.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:03.713][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:03.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:03.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:03.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:03.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:03.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:03.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:03.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:03.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:03.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:03.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:03.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:03.738][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:03.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:03.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:03.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:03.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:03.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:03.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:03.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:03.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:03.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:03.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:03.762][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2022-01-20 10:36:03.764][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-20 10:36:03.767][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2022-01-20 10:36:03.770][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-01-20 10:36:03.772][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-20 10:36:03.775][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-20 10:36:03.777][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-01-20 10:36:03.779][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-20 10:36:03.781][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-20 10:36:03.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:03.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:03.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:03.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:03.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:03.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:03.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:03.801][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.DEBUG[2022-01-20 10:36:03.807][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-20 10:36:03.809][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-20 10:36:03.812][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441".
biodb.TRACE[2022-01-20 10:36:04.567][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15441).
biodb.DEBUG[2022-01-20 10:36:05.733][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-01-20 10:36:05.742][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.content"
biodb.TRACE[2022-01-20 10:36:05.756][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a6d4f93841bd82da498852b3a0a5692d.request"
biodb.TRACE[2022-01-20 10:36:05.767][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml"
biodb.DEBUG[2022-01-20 10:36:05.771][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-20 10:36:05.789][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-20 10:36:05.792][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-20 10:36:05.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:05.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:05.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:05.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:05.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:05.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:05.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:05.814][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:05.817][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:05.819][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:05.821][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:05.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:05.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:05.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:05.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:05.834][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:05.836][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:05.838][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:05.840][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:05.843][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:05.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:05.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:05.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:05.854][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:05.857][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:05.859][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:05.861][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:05.864][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:05.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:05.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:05.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:05.876][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:05.878][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:05.881][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:05.883][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:05.885][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:05.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:05.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:05.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:05.896][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:05.898][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:05.900][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:05.902][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:05.904][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:05.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:05.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:05.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:05.915][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:05.917][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:05.919][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:05.922][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:05.924][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:05.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:05.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:05.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:05.936][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:05.939][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:05.941][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:05.943][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:05.946][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:05.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:05.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:05.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:05.958][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:05.960][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:05.962][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:05.964][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:05.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:05.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:05.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:05.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:05.976][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:05.977][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:05.978][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:05.979][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:05.981][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:05.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:05.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:05.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:05.988][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:05.989][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:05.990][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:05.992][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:05.993][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:05.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:05.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:05.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:06.000][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:06.001][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:06.002][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:06.003][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:06.005][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:06.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:06.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:06.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:06.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:06.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:06.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:06.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:06.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:06.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:06.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:06.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:06.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:06.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:06.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:06.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:06.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:06.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:06.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:06.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:06.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:06.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:06.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:06.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:06.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:06.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:06.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:06.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:06.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:06.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:06.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:06.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:06.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:06.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:06.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:06.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:06.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:06.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:06.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:06.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:06.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:06.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:06.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:06.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:06.088][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2022-01-20 10:36:06.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:06.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:06.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:06.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:06.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:06.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:06.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:06.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:06.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:06.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:06.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:06.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:06.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:06.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:06.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:06.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:06.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:06.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:06.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:06.128][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2022-01-20 10:36:06.130][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-20 10:36:06.133][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2022-01-20 10:36:06.136][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-01-20 10:36:06.138][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-20 10:36:06.140][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-20 10:36:06.142][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-01-20 10:36:06.144][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-20 10:36:06.146][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-20 10:36:06.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:06.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:06.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:06.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:06.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:06.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:06.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:06.162][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.DEBUG[2022-01-20 10:36:06.168][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-20 10:36:06.170][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-20 10:36:06.172][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442".
biodb.TRACE[2022-01-20 10:36:06.714][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=15442).
biodb.DEBUG[2022-01-20 10:36:07.297][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-01-20 10:36:07.306][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.content"
biodb.TRACE[2022-01-20 10:36:07.316][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4c2c678eeeeb53d29ca6f3663ebee297.request"
biodb.TRACE[2022-01-20 10:36:07.329][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml"
biodb.DEBUG[2022-01-20 10:36:07.335][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-20 10:36:07.349][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-20 10:36:07.351][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-20 10:36:07.353][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:07.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:07.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:07.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:07.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:07.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:07.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:07.366][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:07.367][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:07.368][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.370][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:07.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:07.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:07.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:07.379][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:07.382][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:07.384][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.386][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:07.388][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:07.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:07.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:07.399][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:07.402][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:07.404][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.405][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:07.408][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:07.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:07.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:07.419][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:07.422][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:07.424][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.426][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:07.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:07.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:07.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:07.440][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:07.442][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:07.445][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.447][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:07.449][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:07.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:07.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:07.474][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:07.476][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:07.478][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.479][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:07.482][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:07.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:07.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:07.491][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:07.492][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:07.494][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.496][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:07.499][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:07.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:07.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:07.509][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:07.511][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:07.513][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.515][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:07.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:07.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:07.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:07.528][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:07.530][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:07.532][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.533][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:07.536][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:07.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:07.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:07.547][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:07.549][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:07.551][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.552][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:07.555][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:07.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:07.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:07.566][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:07.568][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:07.570][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.572][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:07.574][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:07.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:07.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:07.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:07.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:07.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:07.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:07.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:07.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:07.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:07.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:07.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:07.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:07.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:07.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:07.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:07.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:07.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:07.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:07.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:07.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:07.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:07.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:07.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:07.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:07.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:07.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:07.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:07.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:07.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:07.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:07.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:07.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:07.661][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2022-01-20 10:36:07.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:07.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:07.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:07.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:07.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:07.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:07.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:07.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:07.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:07.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:07.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:07.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:07.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:07.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:07.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:07.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:07.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:07.694][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2022-01-20 10:36:07.696][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-20 10:36:07.699][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2022-01-20 10:36:07.701][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-01-20 10:36:07.704][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-20 10:36:07.706][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-20 10:36:07.708][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-01-20 10:36:07.710][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-20 10:36:07.712][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-20 10:36:07.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:07.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:07.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:07.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:07.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:07.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:07.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:07.731][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.DEBUG[2022-01-20 10:36:07.736][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-20 10:36:07.738][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-20 10:36:07.740][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310".
biodb.TRACE[2022-01-20 10:36:08.207][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=57310).
biodb.DEBUG[2022-01-20 10:36:08.720][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-01-20 10:36:08.744][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.content"
biodb.TRACE[2022-01-20 10:36:08.759][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/e616043f98d9256021d0f5715e02d37b.request"
biodb.TRACE[2022-01-20 10:36:08.772][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml"
biodb.DEBUG[2022-01-20 10:36:08.778][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-20 10:36:08.796][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-20 10:36:08.799][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-20 10:36:08.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:08.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:08.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:08.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:08.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:08.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:08.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:08.813][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:08.815][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:08.816][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:08.817][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:08.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:08.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:08.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:08.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:08.825][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:08.826][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:08.827][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:08.829][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:08.831][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:08.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:08.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:08.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:08.842][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:08.844][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:08.846][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:08.848][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:08.849][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:08.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:08.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:08.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:08.856][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:08.858][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:08.859][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:08.860][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:08.861][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:08.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:08.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:08.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:08.868][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:08.870][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:08.871][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:08.872][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:08.874][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:08.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:08.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:08.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:08.880][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:08.882][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:08.883][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:08.884][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:08.886][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:08.887][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:08.888][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:08.890][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:08.892][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:08.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:08.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:08.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:08.902][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:08.904][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:08.906][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:08.907][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:08.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:08.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:08.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:08.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:08.918][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:08.920][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:08.923][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:08.925][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:08.928][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:08.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:08.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:08.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:08.940][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:08.942][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:08.944][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:08.946][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:08.949][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:08.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:08.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:08.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:08.961][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:08.964][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:08.966][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:08.968][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:08.970][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:08.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:08.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:08.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:08.982][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:08.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:08.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:08.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:08.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:08.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:08.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:08.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:08.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:09.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:09.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:09.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:09.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:09.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:09.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:09.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:09.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:09.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:09.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:09.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:09.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:09.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:09.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:09.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:09.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:09.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:09.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:09.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:09.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:09.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:09.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:09.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:09.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:09.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:09.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:09.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:09.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:09.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:09.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:09.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:09.079][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2022-01-20 10:36:09.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:09.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:09.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:09.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:09.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:09.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:09.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:09.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:09.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:09.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:09.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:09.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:09.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:09.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:09.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:09.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:09.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:09.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:09.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:09.125][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2022-01-20 10:36:09.127][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-20 10:36:09.130][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2022-01-20 10:36:09.133][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-01-20 10:36:09.135][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-20 10:36:09.138][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-20 10:36:09.140][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-01-20 10:36:09.142][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-20 10:36:09.144][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-20 10:36:09.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:09.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:09.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:09.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:09.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:09.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:09.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:09.164][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.DEBUG[2022-01-20 10:36:09.170][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-20 10:36:09.172][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-20 10:36:09.175][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216".
biodb.TRACE[2022-01-20 10:36:09.671][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66216).
biodb.DEBUG[2022-01-20 10:36:10.181][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-01-20 10:36:10.191][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.content"
biodb.TRACE[2022-01-20 10:36:10.208][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a59039263bdeb010b063b31b1dcdd109.request"
biodb.TRACE[2022-01-20 10:36:10.222][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml"
biodb.DEBUG[2022-01-20 10:36:10.229][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-20 10:36:10.244][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-20 10:36:10.246][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-20 10:36:10.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:10.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:10.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:10.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:10.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:10.260][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:10.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:10.267][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:10.269][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:10.271][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:10.273][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:10.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:10.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:10.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:10.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:10.286][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:10.289][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:10.291][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:10.293][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:10.295][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:10.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:10.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:10.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:10.306][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:10.309][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:10.311][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:10.313][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:10.315][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:10.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:10.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:10.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:10.327][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:10.330][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:10.332][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:10.334][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:10.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:10.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:10.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:10.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:10.348][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:10.350][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:10.352][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:10.354][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:10.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:10.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:10.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:10.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:10.368][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:10.371][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:10.373][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:10.375][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:10.378][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:10.380][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:10.382][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:10.384][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:10.387][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:10.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:10.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:10.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:10.398][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:10.400][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:10.401][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:10.402][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:10.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:10.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:10.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:10.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:10.431][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:10.434][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:10.436][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:10.438][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:10.441][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:10.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:10.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:10.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:10.454][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:10.456][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:10.458][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:10.460][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:10.462][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:10.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:10.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:10.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:10.474][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:10.476][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:10.478][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:10.479][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:10.482][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:10.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:10.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:10.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:10.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:10.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:10.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:10.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:10.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:10.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:10.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:10.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:10.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:10.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:10.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:10.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:10.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:10.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:10.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:10.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:10.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:10.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:10.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:10.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:10.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:10.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:10.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:10.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:10.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:10.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:10.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:10.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:10.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:10.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:10.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:10.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:10.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:10.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:10.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:10.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:10.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:10.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:10.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:10.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:10.558][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2022-01-20 10:36:10.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:10.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:10.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:10.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:10.564][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:10.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:10.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:10.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:10.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:10.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:10.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:10.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:10.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:10.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:10.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:10.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:10.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:10.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:10.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:10.590][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2022-01-20 10:36:10.591][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-20 10:36:10.593][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2022-01-20 10:36:10.595][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-01-20 10:36:10.597][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-20 10:36:10.599][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-20 10:36:10.601][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-01-20 10:36:10.604][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-20 10:36:10.605][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-20 10:36:10.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:10.612][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:10.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:10.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:10.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:10.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:10.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:10.620][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.DEBUG[2022-01-20 10:36:10.624][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-20 10:36:10.625][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-20 10:36:10.627][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860".
biodb.TRACE[2022-01-20 10:36:11.140][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70860).
biodb.DEBUG[2022-01-20 10:36:11.618][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-01-20 10:36:11.626][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.content"
biodb.TRACE[2022-01-20 10:36:11.642][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/02f38adb5262f39c1de7b27972a97d3a.request"
biodb.TRACE[2022-01-20 10:36:11.654][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml"
biodb.DEBUG[2022-01-20 10:36:11.660][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-20 10:36:11.677][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-20 10:36:11.693][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-20 10:36:11.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:11.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:11.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:11.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:11.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:11.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:11.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:11.714][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:11.717][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:11.719][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:11.721][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:11.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:11.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:11.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:11.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:11.734][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:11.736][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:11.739][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:11.741][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:11.744][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:11.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:11.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:11.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:11.757][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:11.759][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:11.761][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:11.763][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:11.766][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:11.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:11.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:11.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:11.778][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:11.780][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:11.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:11.785][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:11.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:11.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:11.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:11.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:11.795][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:11.797][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:11.799][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:11.801][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:11.803][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:11.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:11.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:11.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:11.811][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:11.814][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:11.816][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:11.817][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:11.819][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:11.820][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:11.821][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:11.822][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:11.824][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:11.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:11.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:11.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:11.833][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:11.835][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:11.837][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:11.839][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:11.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:11.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:11.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:11.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:11.851][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:11.853][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:11.854][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:11.855][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:11.858][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:11.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:11.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:11.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:11.869][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:11.871][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:11.873][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:11.875][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:11.877][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:11.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:11.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:11.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:11.885][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:11.888][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:11.889][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:11.891][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:11.894][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:11.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:11.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:11.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:11.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:11.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:11.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:11.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:11.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:11.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:11.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:11.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:11.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:11.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:11.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:11.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:11.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:11.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:11.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:11.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:11.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:11.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:11.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:11.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:11.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:11.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:11.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:11.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:11.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:11.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:11.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:11.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:11.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:11.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:11.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:11.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:11.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:11.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:11.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:11.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:11.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:11.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:11.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:11.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:11.988][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2022-01-20 10:36:11.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:11.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:11.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:11.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:11.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:12.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:12.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:12.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:12.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:12.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:12.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:12.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:12.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:12.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:12.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:12.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:12.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:12.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:12.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:12.027][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2022-01-20 10:36:12.029][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-20 10:36:12.033][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2022-01-20 10:36:12.035][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-01-20 10:36:12.044][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-20 10:36:12.045][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-20 10:36:12.047][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-01-20 10:36:12.048][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-20 10:36:12.049][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-20 10:36:12.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:12.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:12.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:12.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:12.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:12.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:12.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:12.064][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.DEBUG[2022-01-20 10:36:12.070][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-20 10:36:12.072][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-20 10:36:12.075][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861".
biodb.TRACE[2022-01-20 10:36:12.736][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70861).
biodb.DEBUG[2022-01-20 10:36:13.273][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-01-20 10:36:13.283][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.content"
biodb.TRACE[2022-01-20 10:36:13.295][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2469ce985de4364ded27031736786fb4.request"
biodb.TRACE[2022-01-20 10:36:13.307][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml"
biodb.DEBUG[2022-01-20 10:36:13.312][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-20 10:36:13.328][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-20 10:36:13.331][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-20 10:36:13.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:13.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:13.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:13.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:13.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:13.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:13.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:13.350][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:13.353][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:13.354][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:13.356][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:13.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:13.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:13.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:13.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:13.367][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:13.369][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:13.371][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:13.372][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:13.375][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:13.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:13.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:13.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:13.384][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:13.386][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:13.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:13.390][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:13.393][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:13.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:13.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:13.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:13.403][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:13.406][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:13.407][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:13.409][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:13.412][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:13.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:13.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:13.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:13.418][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:13.420][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:13.421][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:13.422][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:13.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:13.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:13.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:13.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:13.430][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:13.431][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:13.432][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:13.433][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:13.435][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:13.436][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:13.437][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:13.438][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:13.440][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:13.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:13.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:13.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:13.446][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:13.448][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:13.449][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:13.450][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:13.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:13.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:13.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:13.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:13.458][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:13.459][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:13.461][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:13.462][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:13.463][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:13.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:13.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:13.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:13.470][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:13.471][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:13.472][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:13.473][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:13.475][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:13.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:13.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:13.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:13.482][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:13.493][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:13.495][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:13.497][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:13.499][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:13.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:13.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:13.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:13.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:13.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:13.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:13.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:13.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:13.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:13.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:13.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:13.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:13.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:13.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:13.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:13.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:13.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:13.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:13.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:13.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:13.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:13.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:13.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:13.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:13.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:13.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:13.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:13.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:13.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:13.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:13.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:13.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:13.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:13.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:13.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:13.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:13.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:13.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:13.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:13.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:13.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:13.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:13.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:13.599][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2022-01-20 10:36:13.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:13.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:13.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:13.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:13.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:13.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:13.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:13.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:13.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:13.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:13.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:13.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:13.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:13.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:13.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:13.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:13.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:13.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:13.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:13.638][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2022-01-20 10:36:13.640][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-20 10:36:13.644][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2022-01-20 10:36:13.646][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-01-20 10:36:13.648][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-20 10:36:13.651][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-20 10:36:13.653][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-01-20 10:36:13.655][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-20 10:36:13.657][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-20 10:36:13.663][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:13.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:13.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:13.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:13.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:13.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:13.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:13.677][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.DEBUG[2022-01-20 10:36:13.683][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-20 10:36:13.686][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-20 10:36:13.689][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662".
biodb.TRACE[2022-01-20 10:36:14.192][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78662).
biodb.DEBUG[2022-01-20 10:36:15.434][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-01-20 10:36:15.444][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.content"
biodb.TRACE[2022-01-20 10:36:15.455][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f2a2164b6127ca54c00efe5984f5864a.request"
biodb.TRACE[2022-01-20 10:36:15.468][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml"
biodb.DEBUG[2022-01-20 10:36:15.474][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-20 10:36:15.492][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-20 10:36:15.495][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-20 10:36:15.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:15.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:15.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:15.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:15.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:15.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:15.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:15.515][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:15.517][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:15.519][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:15.521][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:15.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:15.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:15.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:15.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:15.530][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:15.532][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:15.533][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:15.535][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:15.537][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:15.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:15.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:15.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:15.562][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:15.564][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:15.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:15.566][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:15.568][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:15.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:15.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:15.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:15.579][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:15.582][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:15.584][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:15.586][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:15.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:15.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:15.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:15.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:15.600][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:15.603][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:15.605][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:15.607][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:15.610][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:15.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:15.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:15.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:15.621][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:15.624][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:15.626][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:15.627][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:15.630][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:15.632][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:15.634][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:15.636][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:15.638][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:15.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:15.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:15.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:15.648][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:15.651][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:15.652][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:15.654][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:15.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:15.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:15.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:15.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:15.667][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:15.669][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:15.671][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:15.673][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:15.676][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:15.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:15.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:15.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:15.685][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:15.687][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:15.689][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:15.691][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:15.693][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:15.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:15.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:15.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:15.706][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:15.708][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:15.710][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:15.712][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:15.715][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:15.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:15.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:15.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:15.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:15.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:15.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:15.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:15.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:15.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:15.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:15.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:15.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:15.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:15.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:15.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:15.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:15.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:15.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:15.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:15.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:15.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:15.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:15.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:15.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:15.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:15.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:15.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:15.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:15.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:15.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:15.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:15.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:15.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:15.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:15.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:15.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:15.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:15.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:15.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:15.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:15.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:15.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:15.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:15.808][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2022-01-20 10:36:15.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:15.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:15.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:15.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:15.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:15.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:15.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:15.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:15.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:15.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:15.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:15.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:15.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:15.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:15.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:15.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:15.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:15.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:15.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:15.852][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2022-01-20 10:36:15.855][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-20 10:36:15.858][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2022-01-20 10:36:15.861][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-01-20 10:36:15.864][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-20 10:36:15.866][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-20 10:36:15.868][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-01-20 10:36:15.871][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-20 10:36:15.873][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-20 10:36:15.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:15.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:15.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:15.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:15.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:15.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:15.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:15.895][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.DEBUG[2022-01-20 10:36:15.901][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-20 10:36:15.904][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-20 10:36:15.907][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084".
biodb.TRACE[2022-01-20 10:36:16.529][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85084).
biodb.DEBUG[2022-01-20 10:36:17.107][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-01-20 10:36:17.117][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.content"
biodb.TRACE[2022-01-20 10:36:17.133][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62216dc29cd0685dbac0a61545bda088.request"
biodb.TRACE[2022-01-20 10:36:17.147][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml"
biodb.DEBUG[2022-01-20 10:36:17.153][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-20 10:36:17.171][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-20 10:36:17.174][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-20 10:36:17.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:17.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:17.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:17.185][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:17.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:17.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:17.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:17.196][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:17.198][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:17.200][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:17.202][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:17.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:17.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:17.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:17.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:17.216][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:17.218][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:17.220][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:17.222][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:17.225][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:17.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:17.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:17.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:17.236][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:17.239][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:17.241][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:17.243][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:17.245][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:17.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:17.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:17.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:17.257][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:17.260][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:17.262][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:17.264][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:17.266][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:17.268][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:17.270][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:17.272][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:17.275][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:17.277][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:17.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:17.281][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:17.284][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:17.286][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:17.288][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:17.290][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:17.293][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:17.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:17.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:17.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:17.303][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:17.306][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:17.308][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:17.309][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:17.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:17.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:17.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:17.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:17.324][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:17.326][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:17.328][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:17.330][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:17.334][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:17.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:17.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:17.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:17.346][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:17.348][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:17.350][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:17.352][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:17.355][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:17.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:17.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:17.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:17.366][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:17.368][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:17.370][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:17.372][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:17.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:17.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:17.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:17.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:17.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:17.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:17.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:17.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:17.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:17.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:17.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:17.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:17.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:17.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:17.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:17.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:17.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:17.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:17.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:17.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:17.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:17.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:17.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:17.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:17.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:17.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:17.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:17.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:17.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:17.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:17.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:17.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:17.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:17.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:17.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:17.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:17.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:17.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:17.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:17.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:17.476][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2022-01-20 10:36:17.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:17.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:17.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:17.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:17.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:17.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:17.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:17.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:17.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:17.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:17.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:17.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:17.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:17.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:17.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:17.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:17.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:17.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:17.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:17.516][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2022-01-20 10:36:17.517][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-20 10:36:17.520][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2022-01-20 10:36:17.522][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-01-20 10:36:17.524][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-20 10:36:17.526][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-20 10:36:17.529][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-01-20 10:36:17.531][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-20 10:36:17.533][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-20 10:36:17.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:17.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:17.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:17.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:17.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:17.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:17.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:17.548][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.DEBUG[2022-01-20 10:36:17.553][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-20 10:36:17.555][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-20 10:36:17.558][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086".
biodb.TRACE[2022-01-20 10:36:18.079][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=85086).
biodb.DEBUG[2022-01-20 10:36:18.710][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-01-20 10:36:18.720][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.content"
biodb.TRACE[2022-01-20 10:36:18.735][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/cf3472363c4a7effe355d93315025f8b.request"
biodb.TRACE[2022-01-20 10:36:18.749][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml"
biodb.DEBUG[2022-01-20 10:36:18.755][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-20 10:36:18.773][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-20 10:36:18.775][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-20 10:36:18.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:18.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:18.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:18.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:18.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:18.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:18.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:18.792][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:18.793][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:18.795][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:18.796][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:18.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:18.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:18.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:18.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:18.806][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:18.808][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:18.810][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:18.812][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:18.815][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:18.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:18.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:18.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:18.827][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:18.829][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:18.831][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:18.833][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:18.835][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:18.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:18.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:18.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:18.847][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:18.849][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:18.851][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:18.853][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:18.856][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:18.858][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:18.860][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:18.862][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:18.863][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:18.866][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:18.868][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:18.870][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:18.872][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:18.875][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:18.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:18.879][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:18.881][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:18.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:18.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:18.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:18.893][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:18.895][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:18.896][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:18.924][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:18.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:18.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:18.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:18.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:18.945][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:18.948][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:18.950][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:18.952][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:18.955][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:18.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:18.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:18.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:18.964][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:18.965][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:18.967][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:18.968][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:18.969][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:18.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:18.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:18.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:18.979][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:18.982][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:18.984][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:18.986][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:18.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:18.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:18.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:18.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:18.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:19.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:19.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:19.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:19.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:19.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:19.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:19.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:19.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:19.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:19.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:19.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:19.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:19.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:19.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:19.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:19.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:19.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:19.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:19.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:19.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:19.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:19.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:19.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:19.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:19.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:19.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:19.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:19.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:19.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:19.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:19.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:19.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:19.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:19.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:19.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:19.062][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2022-01-20 10:36:19.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:19.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:19.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:19.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:19.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:19.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:19.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:19.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:19.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:19.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:19.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:19.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:19.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:19.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:19.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:19.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:19.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:19.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:19.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:19.103][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2022-01-20 10:36:19.105][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-20 10:36:19.109][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2022-01-20 10:36:19.111][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-01-20 10:36:19.112][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-20 10:36:19.114][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-20 10:36:19.116][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-01-20 10:36:19.118][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-20 10:36:19.120][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-20 10:36:19.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:19.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:19.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:19.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:19.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:19.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:19.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:19.137][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.DEBUG[2022-01-20 10:36:19.142][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-20 10:36:19.144][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-20 10:36:19.147][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123".
biodb.TRACE[2022-01-20 10:36:19.791][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88123).
biodb.DEBUG[2022-01-20 10:36:20.405][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-01-20 10:36:20.415][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.content"
biodb.TRACE[2022-01-20 10:36:20.430][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8e37f256f660b350650d4ca45d7cd291.request"
biodb.TRACE[2022-01-20 10:36:20.442][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml"
biodb.DEBUG[2022-01-20 10:36:20.448][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-20 10:36:20.465][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-20 10:36:20.467][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-20 10:36:20.470][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:20.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:20.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:20.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:20.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:20.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:20.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:20.503][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:20.506][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:20.508][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:20.509][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:20.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:20.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:20.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:20.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:20.523][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:20.526][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:20.528][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:20.530][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:20.532][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:20.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:20.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:20.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:20.544][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:20.546][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:20.548][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:20.550][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:20.553][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:20.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:20.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:20.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:20.565][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:20.567][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:20.569][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:20.571][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:20.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:20.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:20.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:20.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:20.585][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:20.587][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:20.589][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:20.590][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:20.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:20.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:20.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:20.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:20.604][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:20.606][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:20.608][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:20.609][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:20.611][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:20.612][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:20.614][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:20.615][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:20.616][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:20.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:20.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:20.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:20.623][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:20.624][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:20.625][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:20.627][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:20.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:20.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:20.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:20.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:20.635][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:20.636][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:20.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:20.640][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:20.642][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:20.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:20.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:20.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:20.653][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:20.655][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:20.657][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:20.659][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:20.660][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:20.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:20.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:20.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:20.669][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:20.672][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:20.674][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:20.675][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:20.676][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:20.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:20.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:20.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:20.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:20.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:20.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:20.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:20.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:20.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:20.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:20.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:20.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:20.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:20.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:20.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:20.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:20.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:20.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:20.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:20.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:20.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:20.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:20.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:20.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:20.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:20.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:20.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:20.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:20.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:20.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:20.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:20.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:20.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:20.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:20.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:20.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:20.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:20.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:20.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:20.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:20.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:20.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:20.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:20.765][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2022-01-20 10:36:20.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:20.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:20.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:20.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:20.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:20.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:20.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:20.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:20.778][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:20.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:20.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:20.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:20.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:20.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:20.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:20.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:20.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:20.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:20.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:20.800][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2022-01-20 10:36:20.802][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-20 10:36:20.805][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2022-01-20 10:36:20.808][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-01-20 10:36:20.810][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-20 10:36:20.812][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-20 10:36:20.814][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-01-20 10:36:20.816][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-20 10:36:20.818][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-20 10:36:20.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:20.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:20.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:20.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:20.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:20.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:20.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:20.842][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.DEBUG[2022-01-20 10:36:20.847][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-20 10:36:20.849][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-20 10:36:20.851][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117".
biodb.TRACE[2022-01-20 10:36:21.755][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=134117).
biodb.DEBUG[2022-01-20 10:36:22.369][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-01-20 10:36:22.379][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.content"
biodb.TRACE[2022-01-20 10:36:22.394][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/8f998f0023bf19b8745b926f0b2992d7.request"
biodb.TRACE[2022-01-20 10:36:22.406][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml"
biodb.DEBUG[2022-01-20 10:36:22.411][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-20 10:36:22.423][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-20 10:36:22.425][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-20 10:36:22.429][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:22.431][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:22.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:22.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:22.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:22.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:22.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:22.443][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:22.445][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:22.447][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:22.449][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:22.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:22.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:22.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:22.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:22.462][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:22.463][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:22.464][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:22.465][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:22.467][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:22.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:22.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:22.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:22.478][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:22.480][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:22.483][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:22.485][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:22.487][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:22.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:22.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:22.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:22.497][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:22.500][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:22.502][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:22.504][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:22.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:22.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:22.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:22.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:22.519][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:22.521][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:22.523][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:22.525][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:22.528][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:22.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:22.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:22.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:22.540][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:22.542][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:22.545][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:22.546][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:22.549][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:22.551][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:22.553][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:22.556][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:22.559][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:22.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:22.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:22.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:22.572][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:22.574][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:22.576][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:22.578][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:22.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:22.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:22.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:22.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:22.592][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:22.595][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:22.596][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:22.598][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:22.601][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:22.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:22.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:22.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:22.611][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:22.613][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:22.615][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:22.617][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:22.619][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:22.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:22.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:22.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:22.630][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:22.633][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:22.635][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:22.637][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:22.639][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:22.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:22.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:22.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:22.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:22.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:22.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:22.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:22.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:22.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:22.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:22.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:22.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:22.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:22.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:22.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:22.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:22.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:22.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:22.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:22.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:22.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:22.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:22.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:22.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:22.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:22.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:22.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:22.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:22.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:22.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:22.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:22.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:22.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:22.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:22.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:22.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:22.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:22.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:22.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:22.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:22.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:22.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:22.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:22.741][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2022-01-20 10:36:22.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:22.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:22.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:22.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:22.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:22.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:22.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:22.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:22.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:22.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:22.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:22.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:22.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:22.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:22.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:22.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:22.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:22.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:22.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:22.779][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2022-01-20 10:36:22.781][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-20 10:36:22.785][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2022-01-20 10:36:22.787][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-01-20 10:36:22.789][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-20 10:36:22.791][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-20 10:36:22.792][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-01-20 10:36:22.794][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-20 10:36:22.796][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-20 10:36:22.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:22.802][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:22.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:22.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:22.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:22.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:22.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:22.813][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.DEBUG[2022-01-20 10:36:22.819][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-20 10:36:22.821][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-20 10:36:22.824][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307".
biodb.TRACE[2022-01-20 10:36:23.426][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=138307).
biodb.DEBUG[2022-01-20 10:36:23.958][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-01-20 10:36:23.968][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.content"
biodb.TRACE[2022-01-20 10:36:23.984][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/a2610bdf009c6327ccf7d519fff16ded.request"
biodb.TRACE[2022-01-20 10:36:23.998][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml"
biodb.DEBUG[2022-01-20 10:36:24.003][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-20 10:36:24.017][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-20 10:36:24.019][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-20 10:36:24.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:24.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:24.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:24.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:24.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:24.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:24.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:24.039][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:24.042][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:24.043][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:24.045][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:24.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:24.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:24.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:24.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:24.059][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:24.061][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:24.063][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:24.065][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:24.068][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:24.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:24.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:24.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:24.079][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:24.081][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:24.083][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:24.085][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:24.087][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:24.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:24.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:24.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:24.105][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:24.106][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:24.108][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:24.109][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:24.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:24.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:24.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:24.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:24.117][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:24.118][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:24.119][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:24.120][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:24.122][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:24.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:24.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:24.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:24.128][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:24.130][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:24.131][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:24.132][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:24.133][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:24.135][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:24.136][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:24.137][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:24.138][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:24.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:24.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:24.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:24.145][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:24.146][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:24.147][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:24.148][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:24.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:24.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:24.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:24.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:24.156][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:24.158][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:24.159][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:24.160][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:24.162][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:24.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:24.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:24.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:24.168][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:24.170][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:24.171][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:24.172][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:24.173][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:24.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:24.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:24.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:24.180][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:24.181][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:24.182][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:24.183][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:24.185][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:24.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:24.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:24.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:24.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:24.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:24.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:24.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:24.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:24.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:24.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:24.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:24.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:24.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:24.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:24.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:24.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:24.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:24.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:24.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:24.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:24.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:24.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:24.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:24.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:24.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:24.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:24.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:24.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:24.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:24.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:24.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:24.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:24.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:24.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:24.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:24.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:24.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:24.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:24.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:24.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:24.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:24.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:24.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:24.252][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2022-01-20 10:36:24.253][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:24.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:24.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:24.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:24.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:24.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:24.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:24.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:24.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:24.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:24.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:24.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:24.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:24.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:24.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:24.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:24.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:24.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:24.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:24.285][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2022-01-20 10:36:24.287][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-20 10:36:24.289][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2022-01-20 10:36:24.290][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-01-20 10:36:24.292][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-20 10:36:24.293][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-20 10:36:24.295][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-01-20 10:36:24.296][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-20 10:36:24.297][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-20 10:36:24.300][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:24.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:24.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:24.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:24.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:24.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:24.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:24.309][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.DEBUG[2022-01-20 10:36:24.312][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-20 10:36:24.314][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-20 10:36:24.315][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803".
biodb.TRACE[2022-01-20 10:36:25.079][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176803).
biodb.DEBUG[2022-01-20 10:36:25.730][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-01-20 10:36:25.739][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.content"
biodb.TRACE[2022-01-20 10:36:25.755][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/648921bf283f148f1437569ccee0fc41.request"
biodb.TRACE[2022-01-20 10:36:25.768][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml"
biodb.DEBUG[2022-01-20 10:36:25.774][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-20 10:36:25.788][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-20 10:36:25.791][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-20 10:36:25.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:25.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:25.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:25.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:25.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:25.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:25.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:25.810][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:25.812][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:25.814][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:25.816][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:25.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:25.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:25.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:25.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:25.827][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:25.829][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:25.830][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:25.832][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:25.834][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:25.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:25.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:25.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:25.843][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:25.845][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:25.846][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:25.848][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:25.849][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:25.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:25.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:25.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:25.859][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:25.861][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:25.863][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:25.865][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:25.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:25.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:25.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:25.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:25.878][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:25.880][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:25.882][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:25.884][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:25.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:25.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:25.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:25.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:25.898][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:25.900][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:25.902][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:25.904][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:25.906][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:25.908][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:25.910][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:25.912][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:25.914][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:25.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:25.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:25.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:25.922][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:25.924][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:25.926][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:25.928][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:25.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:25.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:25.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:25.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:25.940][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:25.943][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:25.944][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:25.945][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:25.948][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:25.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:25.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:25.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:25.960][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:25.962][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:25.964][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:25.966][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:25.968][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:25.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:25.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:25.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:25.979][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:25.982][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:25.984][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:25.986][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:25.988][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:25.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:25.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:25.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:25.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:25.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:26.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:26.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:26.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:26.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:26.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:26.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:26.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:26.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:26.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:26.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:26.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:26.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:26.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:26.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:26.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:26.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:26.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:26.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:26.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:26.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:26.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:26.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:26.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:26.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:26.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:26.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:26.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:26.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:26.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:26.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:26.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:26.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:26.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:26.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:26.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:26.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:26.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:26.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:26.083][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2022-01-20 10:36:26.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:26.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:26.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:26.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:26.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:26.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:26.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:26.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:26.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:26.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:26.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:26.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:26.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:26.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:26.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:26.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:26.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:26.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:26.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:26.121][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2022-01-20 10:36:26.123][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-20 10:36:26.126][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2022-01-20 10:36:26.129][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-01-20 10:36:26.131][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-01-20 10:36:26.133][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-20 10:36:26.136][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-01-20 10:36:26.138][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-01-20 10:36:26.139][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-01-20 10:36:26.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:26.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:26.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:26.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:26.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:26.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:26.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:26.156][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.DEBUG[2022-01-20 10:36:26.161][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-01-20 10:36:26.163][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-01-20 10:36:26.166][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962".
biodb.TRACE[2022-01-20 10:36:26.673][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176962).
biodb.DEBUG[2022-01-20 10:36:27.153][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-01-20 10:36:27.163][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.content"
biodb.TRACE[2022-01-20 10:36:27.179][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/881a0b9df4a64ff0258c2dc68959eb26.request"
biodb.TRACE[2022-01-20 10:36:27.191][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml"
biodb.DEBUG[2022-01-20 10:36:27.197][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-01-20 10:36:27.215][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-20 10:36:27.217][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-20 10:36:27.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:27.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:27.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:27.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:27.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:27.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:27.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:27.236][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:27.238][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:27.240][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.241][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:27.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:27.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.254][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:27.256][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:27.258][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.260][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.262][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:27.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:27.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.273][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:27.276][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:27.278][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.280][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.282][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:27.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:27.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.294][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:27.296][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:27.298][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.300][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:27.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:27.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.314][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:27.316][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:27.317][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.319][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:27.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:27.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.331][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:27.332][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:27.333][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.334][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.348][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:27.351][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.353][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.355][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.357][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:27.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.367][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:27.369][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:27.371][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.373][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:27.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:27.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.386][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:27.387][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:27.388][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.390][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.392][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:27.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:27.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.402][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:27.404][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:27.405][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.407][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.409][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:27.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:27.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.421][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:27.423][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:27.425][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.427][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.429][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:27.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:27.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:27.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:27.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:27.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:27.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:27.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:27.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:27.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:27.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:27.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:27.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:27.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:27.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:27.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:27.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:27.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:27.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:27.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:27.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:27.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:27.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:27.518][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2022-01-20 10:36:27.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:27.568][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:36:27.574][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:36:27.577][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-01-20 10:36:27.579][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:36:27.582][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-01-20 10:36:27.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:27.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:27.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:27.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:27.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:27.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:27.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:27.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:27.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:27.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:27.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:27.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:27.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:27.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:27.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:27.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:27.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:27.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:27.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:27.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:27.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:27.705][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:27.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:27.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.724][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.738][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:27.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:27.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:27.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:27.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:27.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:27.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:27.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:27.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:27.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:27.797][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:27.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:27.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:27.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:27.807][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:27.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:27.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:27.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:27.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:27.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:27.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:27.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:27.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:27.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:27.850][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:27.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:27.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:27.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:27.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:27.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:27.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:27.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:27.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:27.906][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:27.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:27.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:27.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:27.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:27.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:27.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:27.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:27.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:27.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:27.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:27.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:27.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:27.940][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:27.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:27.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.958][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:27.966][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:27.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:27.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:27.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:27.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:27.977][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:27.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:27.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.989][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:27.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:27.997][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:27.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:28.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:28.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:28.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:28.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:28.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:28.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:28.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:28.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:28.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:28.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:28.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:28.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:28.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:28.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:28.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:28.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:28.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:28.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:28.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:28.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:28.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:28.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:28.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:28.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:28.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:28.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:28.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:28.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:28.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:28.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:28.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:28.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:28.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:28.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:28.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:28.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:28.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:28.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:28.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:28.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:28.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:28.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:28.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:28.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:28.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:28.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:28.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:28.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:28.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:28.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:28.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:28.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:28.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:28.238][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:28.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:28.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.256][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:28.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:28.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:28.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:28.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:28.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:28.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:28.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:28.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.284][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:28.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:28.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:28.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:28.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:28.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:28.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:28.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:28.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:28.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:28.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:28.429][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:36:28.434][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:36:28.437][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1eb5a44d25716d90ff717fcfe93533e3".
biodb.TRACE[2022-01-20 10:36:28.438][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:36:28.440][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1eb5a44d25716d90ff717fcfe93533e3.content".
biodb.DEBUG[2022-01-20 10:36:28.444][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:36:28.447][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:36:28.449][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4ef91a3654a792571304ae6f83c5871b".
biodb.TRACE[2022-01-20 10:36:28.450][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:36:28.452][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4ef91a3654a792571304ae6f83c5871b.content".
biodb.DEBUG[2022-01-20 10:36:28.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:28.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:28.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:28.459][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:28.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:28.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:28.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:28.464][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2022-01-20 10:36:28.465][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-20 10:36:28.468][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2022-01-20 10:36:28.471][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:36:28.474][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml".
biodb.DEBUG[2022-01-20 10:36:28.475][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-20 10:36:28.494][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-20 10:36:28.497][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-20 10:36:28.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:28.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:28.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:28.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:28.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:28.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:28.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:28.518][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:28.520][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:28.522][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.525][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:28.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:28.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.537][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:28.539][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:28.540][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.542][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.544][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:28.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:28.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.554][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:28.555][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:28.557][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.558][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.560][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:28.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:28.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.570][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:28.572][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:28.574][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.575][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.577][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:28.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:28.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.590][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:28.592][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:28.593][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.595][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:28.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:28.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.607][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:28.609][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:28.611][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.613][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.615][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:28.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:28.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.626][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:28.628][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.630][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.631][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.633][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:28.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:28.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.641][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:28.643][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:28.645][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.647][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:28.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:28.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.656][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:28.658][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:28.659][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.661][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.663][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:28.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:28.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.680][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:28.682][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:28.683][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.684][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.685][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:28.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:28.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.696][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:28.698][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:28.700][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.702][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.704][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:28.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:28.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:28.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:28.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:28.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:28.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:28.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:28.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:28.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:28.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:28.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:28.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:28.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:28.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:28.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:28.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:28.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:28.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:28.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:28.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:28.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:28.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:28.794][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2022-01-20 10:36:28.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:28.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:28.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:28.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:28.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:28.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:28.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:28.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:28.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:28.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:28.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:28.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:28.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:28.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:28.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:28.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:28.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:28.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:28.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.846][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:28.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:28.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:28.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:28.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:28.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:28.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:28.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:28.864][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:28.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:28.868][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2022-01-20 10:36:28.869][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-20 10:36:28.871][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2022-01-20 10:36:28.873][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:36:28.876][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml".
biodb.DEBUG[2022-01-20 10:36:28.878][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-20 10:36:28.892][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-20 10:36:28.895][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-20 10:36:28.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:28.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:28.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:28.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:28.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:28.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:28.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:28.914][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:28.916][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:28.918][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.920][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:28.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:28.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.933][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:28.935][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:28.936][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.938][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.940][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:28.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:28.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.951][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:28.953][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:28.954][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.956][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.958][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:28.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:28.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.967][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:28.969][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:28.970][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.972][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.974][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:28.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:28.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.985][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:28.987][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:28.989][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:28.991][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:28.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:28.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:28.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.013][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:29.015][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:29.017][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.019][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.021][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:29.023][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:29.025][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.027][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.029][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:29.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:29.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.039][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.042][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.044][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.046][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.058][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:29.060][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:29.062][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.063][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.066][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:29.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:29.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.073][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:29.075][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:29.077][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.078][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.080][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:29.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:29.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.090][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:29.092][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:29.094][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.095][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.097][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:29.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:29.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:29.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:29.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:29.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:29.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:29.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:29.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:29.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:29.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:29.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:29.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:29.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:29.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:29.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:29.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:29.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:29.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:29.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:29.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:29.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:29.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:29.188][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2022-01-20 10:36:29.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:29.238][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:36:29.242][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:36:29.243][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-01-20 10:36:29.245][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:36:29.247][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-01-20 10:36:29.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:29.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:29.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:29.270][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:29.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:29.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:29.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:29.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:29.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:29.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:29.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:29.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:29.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:29.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:29.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:29.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.311][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:29.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:29.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:29.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:29.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:29.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:29.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:29.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:29.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:29.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:29.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:29.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:29.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:29.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:29.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:29.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:29.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.380][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.389][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:29.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:29.395][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:29.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:29.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:29.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:29.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:29.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:29.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:29.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:29.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:29.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:29.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:29.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:29.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:29.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:29.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:29.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:29.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:29.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:29.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:29.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:29.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:29.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:29.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:29.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:29.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:29.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:29.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:29.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:29.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:29.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:29.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:29.524][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:29.525][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:29.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:29.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:29.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:29.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:29.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:29.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:29.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:29.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:29.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:29.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:29.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:29.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:29.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:29.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.575][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:29.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:29.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:29.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:29.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:29.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:29.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:29.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:29.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:29.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:29.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:29.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:29.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:29.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:29.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:29.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:29.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:29.666][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:29.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:29.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:29.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:29.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:29.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:29.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:29.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:29.702][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:29.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:29.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:29.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:29.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:29.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:29.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:29.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:29.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:29.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:29.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:29.745][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:29.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:29.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:29.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:29.752][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.765][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:29.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:29.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:29.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:29.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:29.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:29.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:29.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:29.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:29.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:29.808][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:29.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:29.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:29.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:29.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:29.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:29.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:29.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:29.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:29.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:29.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:29.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:29.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:29.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:29.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:29.884][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:36:29.890][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:36:29.893][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2022-01-20 10:36:29.896][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:36:29.906][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2022-01-20 10:36:29.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:29.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:29.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:29.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:29.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:29.932][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:29.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:29.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:29.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:29.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:29.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:29.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:29.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:29.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:29.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:29.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.984][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:29.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:29.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:29.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:30.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:30.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:30.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:30.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:30.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:30.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:30.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:30.022][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:30.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:30.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:30.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:30.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:30.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:30.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:30.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:30.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:30.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:30.119][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:30.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:30.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:30.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:30.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:30.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:30.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.139][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:30.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:30.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:30.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:30.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:30.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:30.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:30.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:30.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:30.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:30.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:30.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:30.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:30.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:30.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:30.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:30.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:30.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:30.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:30.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:30.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:30.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:30.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:30.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:30.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:30.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:30.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:30.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:30.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:30.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:30.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:30.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:30.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:30.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:30.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:30.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:30.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:30.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:30.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:30.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:30.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:30.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:30.338][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:30.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:30.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:30.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:30.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:30.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:30.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:30.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:30.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:30.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:30.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:30.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:30.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:30.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:30.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:30.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:30.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:30.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:30.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:30.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:30.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:30.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:30.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:30.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:30.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:30.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:30.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:30.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:30.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:30.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:30.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:30.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:30.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:30.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:30.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:30.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:30.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:30.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:30.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:30.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:30.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:30.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:30.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:30.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:30.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:30.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:30.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:30.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:30.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:30.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:30.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:30.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:30.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:30.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:30.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:30.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:30.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:30.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:30.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:30.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:30.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:30.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:30.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.600][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:30.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.628][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-01-20 10:36:30.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-01-20 10:36:30.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-01-20 10:36:30.640][biodb::testThat] 
biodb.INFO [2022-01-20 10:36:30.641][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2022-01-20 10:36:30.642][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 10:36:30.643][biodb::testThat] 
biodb.TRACE[2022-01-20 10:36:30.648][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-01-20 10:36:30.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-01-20 10:36:30.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:30.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:30.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:30.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:30.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:30.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:30.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:30.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:30.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:30.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:30.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:30.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:30.698][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:30.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:30.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:30.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:30.797][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:36:30.803][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:36:30.806][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-01-20 10:36:30.809][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:36:30.810][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-01-20 10:36:30.814][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:36:30.820][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:36:30.822][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-01-20 10:36:30.823][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:36:30.825][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-01-20 10:36:30.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:30.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:30.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:30.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:30.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:30.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:30.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:30.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:30.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:30.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:30.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:30.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:30.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:30.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:30.861][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:36:30.867][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:36:30.877][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-01-20 10:36:30.880][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:36:30.883][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-01-20 10:36:30.887][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-01-20 10:36:30.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:30.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:30.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:30.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:30.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:30.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:30.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:30.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:30.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:30.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:30.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:30.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.921][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:30.923][private$selectFields] 
biodb.TRACE[2022-01-20 10:36:30.924][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-20 10:36:30.925][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-20 10:36:30.927][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:30.929][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:30.931][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:30.933][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.935][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.937][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:30.939][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:30.940][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.941][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.942][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:30.943][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:30.945][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:30.946][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:30.947][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.948][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.949][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-01-20 10:36:30.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:30.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:30.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:30.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:30.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:30.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:30.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:30.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:30.988][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-01-20 10:36:30.990][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-01-20 10:36:30.992][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-01-20 10:36:31.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:31.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:31.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:31.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:31.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:31.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:31.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:31.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:31.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:31.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:31.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:31.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:31.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:31.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:31.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:31.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:31.251][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:36:31.256][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:36:31.259][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-01-20 10:36:31.262][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:36:31.265][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-01-20 10:36:31.270][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:36:31.275][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:36:31.277][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-01-20 10:36:31.279][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:36:31.281][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-01-20 10:36:31.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:31.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:31.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:31.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:31.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:31.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:31.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:31.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:31.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:31.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:31.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:31.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:31.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:31.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:31.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:31.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:31.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:31.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:31.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:31.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:31.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:31.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:31.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:31.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:31.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:31.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:31.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:31.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:31.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:31.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:31.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:31.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:31.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:31.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:31.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:31.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:31.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:31.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:31.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:31.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:31.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:31.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:31.428][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-01-20 10:36:31.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:31.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:31.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:31.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:31.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:31.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:31.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:31.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.502][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:31.503][private$selectFields] 
biodb.TRACE[2022-01-20 10:36:31.505][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-20 10:36:31.507][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-20 10:36:31.508][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:31.510][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.512][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.514][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.516][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.518][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.520][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.522][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.523][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.524][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:31.526][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:31.528][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.530][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.532][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.534][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.536][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-01-20 10:36:31.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.562][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-01-20 10:36:31.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:31.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:31.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:31.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:31.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:31.572][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:31.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:31.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.659][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:31.661][private$selectFields] 
biodb.TRACE[2022-01-20 10:36:31.663][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-20 10:36:31.665][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-20 10:36:31.667][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:31.669][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.670][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.672][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.674][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.676][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.678][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.680][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.682][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.683][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:31.706][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:31.707][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.709][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.711][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.713][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.715][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-01-20 10:36:31.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.745][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-01-20 10:36:31.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:31.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:31.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:31.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:31.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:31.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:31.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:31.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.793][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:31.795][private$selectFields] 
biodb.TRACE[2022-01-20 10:36:31.797][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-20 10:36:31.799][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-20 10:36:31.801][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:31.803][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.806][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.808][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.809][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.812][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.814][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.816][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.818][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.820][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:31.822][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:31.824][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.826][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.828][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.830][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.831][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-01-20 10:36:31.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.849][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:31.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.858][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-01-20 10:36:31.860][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-01-20 10:36:31.862][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-01-20 10:36:31.875][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-01-20 10:36:31.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-01-20 10:36:31.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-01-20 10:36:31.886][biodb::testThat] 
biodb.INFO [2022-01-20 10:36:31.888][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2022-01-20 10:36:31.890][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 10:36:31.892][biodb::testThat] 
biodb.TRACE[2022-01-20 10:36:31.898][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-01-20 10:36:31.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-01-20 10:36:31.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:31.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:31.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.916][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:31.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:31.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:31.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:31.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:31.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:31.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:31.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:31.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:31.945][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:31.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:31.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:31.952][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:31.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:31.956][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:31.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:32.062][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:36:32.069][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:36:32.072][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-01-20 10:36:32.074][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:36:32.077][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-01-20 10:36:32.083][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:36:32.089][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:36:32.091][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-01-20 10:36:32.092][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:36:32.094][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-01-20 10:36:32.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:32.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:32.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:32.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:32.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:32.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:32.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:32.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:32.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:32.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:32.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:32.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:32.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:32.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:32.136][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:36:32.150][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:36:32.153][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-01-20 10:36:32.155][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:36:32.158][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-01-20 10:36:32.162][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-01-20 10:36:32.165][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:32.166][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:32.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:32.171][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:32.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:32.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:32.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:32.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.184][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.191][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:32.192][private$selectFields] 
biodb.TRACE[2022-01-20 10:36:32.194][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-20 10:36:32.197][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-20 10:36:32.199][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:32.201][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.203][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.205][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.206][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.207][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.209][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.211][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.212][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.214][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:32.216][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:32.218][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.219][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.222][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.223][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.225][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-01-20 10:36:32.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.250][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-01-20 10:36:32.252][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-01-20 10:36:32.254][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-01-20 10:36:32.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:32.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:32.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:32.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:32.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:32.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:32.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:32.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:32.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:32.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:32.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:32.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:32.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:32.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:32.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:32.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:32.407][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:36:32.412][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:36:32.414][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-01-20 10:36:32.416][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:36:32.419][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-01-20 10:36:32.423][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:36:32.428][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:36:32.430][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-01-20 10:36:32.433][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:36:32.435][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-01-20 10:36:32.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:32.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:32.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:32.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:32.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:32.451][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:32.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:32.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:32.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:32.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:32.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:32.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:32.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:32.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:32.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:32.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:32.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:32.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:32.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:32.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:32.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:32.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:32.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:32.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:32.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:32.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:32.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:32.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:32.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:32.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:32.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:32.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:32.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:32.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:32.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:32.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:32.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:32.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:32.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:32.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:32.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:32.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:32.558][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-01-20 10:36:32.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:32.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:32.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:32.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:32.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:32.569][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:32.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:32.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.582][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:32.584][private$selectFields] 
biodb.TRACE[2022-01-20 10:36:32.585][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-20 10:36:32.587][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-20 10:36:32.588][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:32.591][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.593][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.595][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.596][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.598][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.601][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.602][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.604][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.606][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:32.607][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:32.609][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.612][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.613][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.615][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.617][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-01-20 10:36:32.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.640][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-01-20 10:36:32.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:32.643][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:32.644][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:32.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:32.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:32.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:32.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:32.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.670][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:32.671][private$selectFields] 
biodb.TRACE[2022-01-20 10:36:32.673][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-20 10:36:32.675][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-20 10:36:32.677][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:32.679][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.682][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.683][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.685][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.687][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.689][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.691][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.693][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.695][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:32.697][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:32.699][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.701][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.703][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.705][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.707][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-01-20 10:36:32.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.735][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-01-20 10:36:32.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:32.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:32.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:32.744][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:32.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:32.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:32.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:32.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.765][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:32.766][private$selectFields] 
biodb.TRACE[2022-01-20 10:36:32.768][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-20 10:36:32.769][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-20 10:36:32.770][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:32.771][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.772][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.774][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.775][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.776][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.777][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.778][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.779][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.781][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:32.782][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:32.784][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.786][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.788][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.790][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.797][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-01-20 10:36:32.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:32.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.815][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-01-20 10:36:32.816][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-01-20 10:36:32.817][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-01-20 10:36:32.825][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-01-20 10:36:32.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-01-20 10:36:32.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-01-20 10:36:32.831][biodb::testThat] 
biodb.INFO [2022-01-20 10:36:32.832][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2022-01-20 10:36:32.833][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 10:36:32.834][biodb::testThat] 
biodb.TRACE[2022-01-20 10:36:32.838][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-01-20 10:36:32.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-01-20 10:36:32.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:32.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:32.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:32.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:32.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:32.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:32.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:32.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:32.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:32.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:32.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:32.877][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:32.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:32.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:32.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:32.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:32.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:32.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:32.979][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:36:32.985][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:36:32.987][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1e3885f0c8b7bc081513880959401862".
biodb.TRACE[2022-01-20 10:36:32.989][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:36:32.992][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1e3885f0c8b7bc081513880959401862.content".
biodb.DEBUG[2022-01-20 10:36:32.997][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:36:33.001][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:36:33.003][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4b7e19492b2d1086a5dba1710a3b39b".
biodb.TRACE[2022-01-20 10:36:33.004][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:36:33.006][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/f4b7e19492b2d1086a5dba1710a3b39b.content".
biodb.DEBUG[2022-01-20 10:36:33.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:33.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:33.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:33.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:33.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:33.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:33.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:33.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:33.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:33.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:33.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:33.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:33.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:33.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:33.037][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:36:33.042][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:36:33.045][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d57f841033be8ab371045edb0388ed60".
biodb.TRACE[2022-01-20 10:36:33.047][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:36:33.050][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/d57f841033be8ab371045edb0388ed60.content".
biodb.DEBUG[2022-01-20 10:36:33.055][private$bdb$entriesToDataframe] 1 entrie(s) to convert in data frame.
biodb.DEBUG[2022-01-20 10:36:33.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:33.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:33.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:33.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:33.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:33.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:33.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:33.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.094][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:33.096][private$selectFields] 
biodb.TRACE[2022-01-20 10:36:33.098][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-20 10:36:33.100][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-20 10:36:33.102][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:33.105][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.106][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.108][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.109][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.111][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.113][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.114][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.116][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.118][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:33.119][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:33.121][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.123][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.125][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.127][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.128][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-01-20 10:36:33.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.145][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-01-20 10:36:33.146][private$entriesToListOfDataframes] Converted 1 entry/ies to data frame(s).
biodb.DEBUG[2022-01-20 10:36:33.147][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-01-20 10:36:33.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:33.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:33.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:33.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:33.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:33.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:33.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:33.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:33.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:33.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:33.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:33.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:33.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:33.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:33.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:33.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:33.296][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:36:33.301][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:36:33.304][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c60f2116f91d4ce61370ae6298305b49".
biodb.TRACE[2022-01-20 10:36:33.307][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:36:33.310][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c60f2116f91d4ce61370ae6298305b49.content".
biodb.DEBUG[2022-01-20 10:36:33.316][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:36:33.322][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:36:33.325][cch$loadFileContent] Trying to load 1 files from cache: [1]: "921bb2fccd1f3497458cb7cf8fd2ffda".
biodb.TRACE[2022-01-20 10:36:33.327][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:36:33.330][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/921bb2fccd1f3497458cb7cf8fd2ffda.content".
biodb.DEBUG[2022-01-20 10:36:33.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:33.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:33.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:33.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:33.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:33.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:33.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:33.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:33.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:33.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:33.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:33.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:33.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:33.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:33.371][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:33.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:33.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:33.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:33.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:33.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:33.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:33.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:33.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:33.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:33.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:33.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:33.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:33.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:33.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:33.416][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:33.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:33.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:33.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:33.425][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:33.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:33.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:33.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:33.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:33.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:33.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:33.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:33.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:33.452][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-01-20 10:36:33.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:33.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:33.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:33.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:33.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:33.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:33.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:33.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.485][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:33.486][private$selectFields] 
biodb.TRACE[2022-01-20 10:36:33.487][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-20 10:36:33.489][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-20 10:36:33.491][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:33.493][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.495][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.496][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.498][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.500][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.502][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.504][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.506][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.507][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:33.509][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:33.511][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.513][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.515][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.517][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.518][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-01-20 10:36:33.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.545][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2022-01-20 10:36:33.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:33.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:33.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:33.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:33.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:33.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:33.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:33.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.581][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:33.583][private$selectFields] 
biodb.TRACE[2022-01-20 10:36:33.585][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-20 10:36:33.586][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-20 10:36:33.588][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:33.590][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.593][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.595][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.596][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.599][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.601][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.603][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.604][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.606][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:33.608][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:33.610][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.612][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.614][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.616][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.618][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-01-20 10:36:33.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.645][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2022-01-20 10:36:33.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:33.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:33.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:33.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:33.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:33.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:33.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:33.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.674][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:33.676][private$selectFields] 
biodb.TRACE[2022-01-20 10:36:33.678][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-01-20 10:36:33.679][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-01-20 10:36:33.681][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:33.683][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.686][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.688][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.690][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.692][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.694][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.696][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.697][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.699][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:33.701][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2022-01-20 10:36:33.703][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.705][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.706][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.708][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.709][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2022-01-20 10:36:33.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.735][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2022-01-20 10:36:33.736][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-01-20 10:36:33.738][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-01-20 10:36:33.757][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-01-20 10:36:33.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-01-20 10:36:33.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-01-20 10:36:33.762][biodb::testThat] 
biodb.INFO [2022-01-20 10:36:33.764][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2022-01-20 10:36:33.765][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 10:36:33.766][biodb::testThat] 
biodb.DEBUG[2022-01-20 10:36:33.768][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2022-01-20 10:36:33.769][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2022-01-20 10:36:33.771][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2022-01-20 10:36:33.773][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:36:33.776][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGA.xml".
biodb.DEBUG[2022-01-20 10:36:33.778][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-20 10:36:33.798][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2022-01-20 10:36:33.800][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2022-01-20 10:36:33.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:33.805][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:33.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:33.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:33.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:33.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:33.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:33.817][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:33.819][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:33.820][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.822][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:33.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:33.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.840][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:33.842][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:33.843][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.844][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.847][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:33.849][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:33.851][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.853][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.856][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:33.857][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:33.859][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.860][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.861][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:33.863][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:33.865][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.866][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.868][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:33.870][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:33.872][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.873][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.875][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:33.877][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:33.878][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.880][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.882][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:33.884][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:33.885][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.886][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.888][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:33.890][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:33.892][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.894][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.896][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:33.898][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:33.900][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.901][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.903][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:33.906][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:33.908][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.910][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:33.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:33.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:33.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:33.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:33.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:33.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:33.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:33.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:33.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:33.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:33.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:33.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:33.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:33.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:33.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:33.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:33.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:33.989][self$createEntryFromContent] Accession numbers: .
biodb.DEBUG[2022-01-20 10:36:33.990][self$createEntryFromContent] Found %d entry/ies without an accession number. Set it/them to NULL.1
biodb.INFO [2022-01-20 10:36:33.996][biodb::testThat] 
biodb.INFO [2022-01-20 10:36:33.998][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2022-01-20 10:36:33.999][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 10:36:34.001][biodb::testThat] 
biodb.DEBUG[2022-01-20 10:36:34.016][function(conn, opt)] IDS: [4]: "WRONGB, 15440, 2528, 7799"
biodb.DEBUG[2022-01-20 10:36:34.018][private$loadEntries] Creating entries from ids [3]: "WRONGB, 2528, 7799".
biodb.DEBUG[2022-01-20 10:36:34.020][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2022-01-20 10:36:34.023][cch$loadFileContent] Trying to load 3 files from cache: [3]: "WRONGB, 2528, 7799".
biodb.TRACE[2022-01-20 10:36:34.026][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2022-01-20 10:36:34.029][loadFileContents] Loaded 3 files from cache: [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGB.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2022-01-20 10:36:34.040][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2022-01-20 10:36:34.060][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2022-01-20 10:36:34.063][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2022-01-20 10:36:34.066][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:34.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:34.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:34.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:34.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:34.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:34.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:34.082][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:34.084][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:34.085][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.087][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:34.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:34.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.104][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:34.106][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:34.107][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.109][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.111][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:34.113][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:34.115][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.117][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.120][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:34.121][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:34.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.124][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.126][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:34.128][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:34.130][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.131][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.133][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:34.135][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:34.137][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.138][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.141][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:34.143][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:34.144][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.146][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.147][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:34.149][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:34.151][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.152][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.154][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:34.156][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:34.157][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.159][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.162][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:34.164][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:34.167][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.168][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.170][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:34.172][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:34.174][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.176][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:34.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:34.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:34.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:34.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:34.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:34.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:34.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:34.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:34.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:34.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:34.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:34.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:34.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:34.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:34.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:34.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:34.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:34.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:34.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:34.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:34.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:34.271][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:34.274][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:34.276][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.278][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:34.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:34.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.297][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:34.299][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:34.301][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.303][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.306][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:34.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:34.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.321][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:34.323][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:34.325][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.327][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.330][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:34.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:34.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.347][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:34.350][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:34.352][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.354][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:34.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:34.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.374][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:34.376][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:34.378][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.380][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.382][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:34.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:34.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.408][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:34.410][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:34.412][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.415][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.417][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:34.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:34.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.432][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:34.434][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:34.436][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.438][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.440][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:34.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:34.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.456][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:34.459][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:34.460][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.462][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:34.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:34.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.480][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:34.482][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:34.484][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.486][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.489][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:34.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:34.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.501][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:34.503][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:34.504][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.506][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.507][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:34.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:34.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.516][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:34.518][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:34.519][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.520][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.522][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:34.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:34.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:34.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:34.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:34.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:34.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:34.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:34.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:34.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:34.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:34.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:34.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:34.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:34.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:34.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:34.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:34.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:34.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:34.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:34.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:34.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:34.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:34.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-01-20 10:36:34.610][ef$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:34.612][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:34.614][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.615][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:34.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:34.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.634][ef$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:34.636][ef$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:34.638][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.640][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.642][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2022-01-20 10:36:34.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2022-01-20 10:36:34.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.657][ef$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:34.659][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:34.661][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.663][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.666][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-01-20 10:36:34.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-01-20 10:36:34.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.678][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:34.680][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:34.682][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.683][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-01-20 10:36:34.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-01-20 10:36:34.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.699][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:34.701][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:34.703][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.704][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.706][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-01-20 10:36:34.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-01-20 10:36:34.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.731][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:34.732][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:34.734][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.736][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.738][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:34.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-01-20 10:36:34.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.753][ef$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:34.755][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:34.757][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.759][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.762][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2022-01-20 10:36:34.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-01-20 10:36:34.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.775][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:34.777][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:34.779][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.780][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:34.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-01-20 10:36:34.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.798][ef$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:34.801][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:34.803][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.804][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.807][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-01-20 10:36:34.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-01-20 10:36:34.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.823][ef$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:34.825][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:34.827][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.830][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.832][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2022-01-20 10:36:34.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2022-01-20 10:36:34.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.850][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:34.852][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:34.853][ef$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.854][ef$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.857][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-01-20 10:36:34.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-01-20 10:36:34.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:34.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:34.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:34.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:34.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:34.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:34.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-01-20 10:36:34.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-01-20 10:36:34.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:34.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:34.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:34.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:34.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:34.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:34.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:34.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:34.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:34.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:34.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:34.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:34.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:34.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:34.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:34.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:34.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:34.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:34.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:34.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:34.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:34.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:34.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-01-20 10:36:34.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-01-20 10:36:34.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-01-20 10:36:34.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-01-20 10:36:34.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-01-20 10:36:34.997][self$createEntryFromContent] Accession numbers: , 2528, 7799.
biodb.DEBUG[2022-01-20 10:36:34.999][self$createEntryFromContent] Found %d entry/ies without an accession number. Set it/them to NULL.1
biodb.DEBUG[2022-01-20 10:36:35.001][function(conn, opt)] Entries: [4]: "NULL, <environment>, <environment>, <environment>"
biodb.INFO [2022-01-20 10:36:35.014][biodb::testThat] 
biodb.INFO [2022-01-20 10:36:35.016][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2022-01-20 10:36:35.018][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 10:36:35.019][biodb::testThat] 
biodb.INFO [2022-01-20 10:36:35.067][biodb::testThat] 
biodb.INFO [2022-01-20 10:36:35.069][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2022-01-20 10:36:35.071][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 10:36:35.072][biodb::testThat] 
biodb.INFO [2022-01-20 10:36:35.081][biodb::testThat] 
biodb.INFO [2022-01-20 10:36:35.082][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2022-01-20 10:36:35.084][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 10:36:35.086][biodb::testThat] 
biodb.DEBUG[2022-01-20 10:36:35.091][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1*&searchCategory=CHEBI ID&maximumResults=100&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:36:35.096][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:36:35.099][cch$loadFileContent] Trying to load 1 files from cache: [1]: "abfdad4f2c265f1c152262cabd0cf864".
biodb.TRACE[2022-01-20 10:36:35.102][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:36:35.104][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/abfdad4f2c265f1c152262cabd0cf864.content".
biodb.INFO [2022-01-20 10:36:35.119][biodb::testThat] 
biodb.INFO [2022-01-20 10:36:35.121][biodb::testThat] Running test function  test.annotateMzValues  (" annotateMzValues() works correctly. ").
biodb.INFO [2022-01-20 10:36:35.123][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 10:36:35.125][biodb::testThat] 
biodb.ERROR[2022-01-20 10:36:35.147][conn$annotateMzValues] No column named "mz" was found inside data frame.
biodb.ERROR[2022-01-20 10:36:35.169][ef$checkIsDefined] Field(s) "foo" is/are not defined.
biodb.INFO [2022-01-20 10:36:35.181][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-01-20 10:36:35.184][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2022-01-20 10:36:35.186][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2022-01-20 10:36:35.188][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-01-20 10:36:35.189][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:35.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:35.193][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:35.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:35.195][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-01-20 10:36:35.203][biodb::testContext] 
biodb.INFO [2022-01-20 10:36:35.205][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-20 10:36:35.207][biodb::testContext] Test context - Test conversions
biodb.INFO [2022-01-20 10:36:35.209][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-20 10:36:35.210][biodb::testContext] 
biodb.INFO [2022-01-20 10:36:35.219][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-01-20 10:36:35.223][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2022-01-20 10:36:35.229][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-20 10:36:35.230][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-01-20 10:36:35.232][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-01-20 10:36:35.233][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:35.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.238][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-01-20 10:36:35.240][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-01-20 10:36:35.242][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:35.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.246][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-01-20 10:36:35.248][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-01-20 10:36:35.250][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:35.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.255][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-01-20 10:36:35.358][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-01-20 10:36:35.360][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-01-20 10:36:35.362][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:35.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.367][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-01-20 10:36:35.369][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-01-20 10:36:35.371][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-01-20 10:36:35.373][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:35.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.378][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-01-20 10:36:35.381][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-01-20 10:36:35.382][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:35.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.387][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-01-20 10:36:35.389][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-01-20 10:36:35.391][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-01-20 10:36:35.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:35.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.396][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-01-20 10:36:35.398][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-01-20 10:36:35.400][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:35.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.405][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-01-20 10:36:35.407][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-01-20 10:36:35.409][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-01-20 10:36:35.410][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:35.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.416][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-01-20 10:36:35.418][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-01-20 10:36:35.420][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-01-20 10:36:35.422][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-01-20 10:36:35.423][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-01-20 10:36:35.425][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-01-20 10:36:35.426][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:35.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.430][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-01-20 10:36:35.432][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-01-20 10:36:35.433][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:35.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.439][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-01-20 10:36:35.441][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-01-20 10:36:35.443][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:35.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.448][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-01-20 10:36:35.451][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-01-20 10:36:35.452][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:35.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.458][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-01-20 10:36:35.460][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-01-20 10:36:35.462][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:35.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.468][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-01-20 10:36:35.469][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-01-20 10:36:35.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:35.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.476][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-01-20 10:36:35.478][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-01-20 10:36:35.488][self$set] Set key svn.binary.path to "/usr/bin/svn".
biodb.DEBUG[2022-01-20 10:36:35.489][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:35.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.501][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-01-20 10:36:35.503][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-01-20 10:36:35.505][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-01-20 10:36:35.507][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:35.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.512][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-01-20 10:36:35.515][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-20 10:36:35.517][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-01-20 10:36:35.519][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:35.521][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 10:36:35.523][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:35.525][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 10:36:35.527][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 10:36:35.530][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 10:36:35.532][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-20 10:36:35.534][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 10:36:35.536][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:35.537][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-01-20 10:36:35.539][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 10:36:35.541][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:36:35.544][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:35.546][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-20 10:36:35.546][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 10:36:35.546][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-20 10:36:35.546][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-20 10:36:35.546][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-20 10:36:35.547][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 10:36:35.550][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 10:36:35.551][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 10:36:35.553][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 10:36:35.555][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 10:36:35.557][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 10:36:35.559][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 10:36:35.561][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:36:35.563][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 10:36:35.565][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 10:36:35.567][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 10:36:35.568][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:36:35.570][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-01-20 10:36:35.572][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-20 10:36:35.573][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-01-20 10:36:35.575][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:35.576][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 10:36:35.578][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:35.579][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 10:36:35.580][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 10:36:35.582][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 10:36:35.583][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-20 10:36:35.585][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 10:36:35.587][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:35.589][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-01-20 10:36:35.590][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 10:36:35.592][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:36:35.594][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:35.595][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-20 10:36:35.595][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 10:36:35.595][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-20 10:36:35.595][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-20 10:36:35.595][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-20 10:36:35.597][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 10:36:35.599][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 10:36:35.600][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 10:36:35.602][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 10:36:35.604][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 10:36:35.605][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 10:36:35.607][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 10:36:35.608][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:36:35.609][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 10:36:35.610][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 10:36:35.611][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 10:36:35.612][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:36:35.614][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-01-20 10:36:35.616][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:35.618][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-01-20 10:36:35.620][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:35.623][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 10:36:35.625][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:35.627][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 10:36:35.628][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 10:36:35.630][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 10:36:35.632][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-20 10:36:35.634][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 10:36:35.636][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-20 10:36:35.638][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-01-20 10:36:35.640][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 10:36:35.642][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:36:35.644][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:35.646][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:36:35.649][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 10:36:35.651][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 10:36:35.652][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 10:36:35.653][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 10:36:35.655][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 10:36:35.656][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 10:36:35.657][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 10:36:35.659][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:36:35.660][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 10:36:35.661][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 10:36:35.663][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 10:36:35.665][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:36:35.667][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-01-20 10:36:35.670][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:35.672][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-01-20 10:36:35.674][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:35.676][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 10:36:35.677][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:35.678][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 10:36:35.680][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 10:36:35.681][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 10:36:35.682][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-20 10:36:35.684][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 10:36:35.686][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-20 10:36:35.688][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-01-20 10:36:35.690][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 10:36:35.692][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:36:35.694][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:35.696][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:36:35.698][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 10:36:35.700][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 10:36:35.701][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 10:36:35.703][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 10:36:35.705][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 10:36:35.707][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 10:36:35.710][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 10:36:35.711][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:36:35.712][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 10:36:35.713][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 10:36:35.714][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 10:36:35.716][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:36:35.718][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-20 10:36:35.720][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.723][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:35.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:35.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:35.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.731][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:35.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:35.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:35.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.739][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:35.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:35.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:35.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.748][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:35.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:35.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:35.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.757][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:35.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:35.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:35.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.765][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:35.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:35.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:35.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.775][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:35.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:35.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:35.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.783][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:35.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:35.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:35.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.791][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:35.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:35.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:35.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.808][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:35.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:35.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:35.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.815][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:35.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:35.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:35.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.823][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:35.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:35.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:35.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.832][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:35.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:35.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:35.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.839][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:35.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:35.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:35.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.847][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:35.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:35.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:35.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.855][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:35.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:35.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:35.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.864][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:35.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:35.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:35.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:35.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:35.872][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-01-20 10:36:35.874][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-01-20 10:36:35.877][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-01-20 10:36:35.880][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-01-20 10:36:35.883][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-01-20 10:36:35.886][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-01-20 10:36:35.889][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-01-20 10:36:35.892][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-01-20 10:36:35.894][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-01-20 10:36:35.897][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-01-20 10:36:35.899][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-01-20 10:36:35.901][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-01-20 10:36:35.904][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-01-20 10:36:35.906][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-01-20 10:36:35.908][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-01-20 10:36:35.909][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-01-20 10:36:35.911][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-01-20 10:36:35.914][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-01-20 10:36:35.916][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-01-20 10:36:35.917][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-01-20 10:36:35.920][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-01-20 10:36:35.923][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-01-20 10:36:35.926][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-01-20 10:36:35.929][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-01-20 10:36:35.931][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-01-20 10:36:35.934][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-01-20 10:36:35.937][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-01-20 10:36:35.940][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-01-20 10:36:35.943][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-01-20 10:36:35.946][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-01-20 10:36:35.948][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-01-20 10:36:35.951][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-01-20 10:36:35.954][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-01-20 10:36:35.957][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-01-20 10:36:35.960][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-01-20 10:36:35.962][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-01-20 10:36:35.965][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-01-20 10:36:35.968][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-01-20 10:36:35.971][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-01-20 10:36:35.973][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-01-20 10:36:35.976][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-01-20 10:36:35.979][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-01-20 10:36:35.982][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-01-20 10:36:35.984][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-01-20 10:36:35.986][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-01-20 10:36:35.988][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-01-20 10:36:35.991][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-01-20 10:36:35.993][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-01-20 10:36:35.995][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-01-20 10:36:35.997][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-01-20 10:36:36.000][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-01-20 10:36:36.003][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-01-20 10:36:36.006][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-01-20 10:36:36.009][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-01-20 10:36:36.012][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-01-20 10:36:36.014][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-01-20 10:36:36.017][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-01-20 10:36:36.020][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-01-20 10:36:36.022][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-01-20 10:36:36.025][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-01-20 10:36:36.027][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-01-20 10:36:36.029][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-01-20 10:36:36.032][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-01-20 10:36:36.035][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-01-20 10:36:36.037][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-01-20 10:36:36.040][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-01-20 10:36:36.043][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-01-20 10:36:36.046][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-01-20 10:36:36.048][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-01-20 10:36:36.050][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-01-20 10:36:36.052][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-01-20 10:36:36.054][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-01-20 10:36:36.056][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-01-20 10:36:36.059][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-01-20 10:36:36.061][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-01-20 10:36:36.063][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-01-20 10:36:36.066][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-01-20 10:36:36.069][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-01-20 10:36:36.072][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-01-20 10:36:36.074][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-01-20 10:36:36.077][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-01-20 10:36:36.080][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-01-20 10:36:36.083][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-01-20 10:36:36.086][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-01-20 10:36:36.089][initialize] This is biodb version 1.2.2.
biodb.DEBUG[2022-01-20 10:36:36.090][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-20 10:36:36.092][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:36.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:36.094][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.113][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:36.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:36.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:36.119][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:36.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:36.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.124][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:36.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:36.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:36.128][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:36.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:36.132][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.135][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:36.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:36.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:36.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:36.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:36.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.145][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:36.147][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:36.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:36.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:36.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:36.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.155][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:36.156][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:36.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:36.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:36.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:36.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.166][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:36.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:36.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:36.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:36.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:36.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.175][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:36.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:36.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:36.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:36.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:36.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.184][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:36.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:36.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:36.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:36.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:36.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.195][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:36.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:36.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:36.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:36.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:36.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.204][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:36.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:36.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:36.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:36.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:36.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.213][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:36.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:36.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:36.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:36.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:36.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.225][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:36.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:36.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:36.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:36.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:36.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.236][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:36.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:36.240][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:36.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:36.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:36.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.247][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:36.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:36.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:36.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:36.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:36.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.259][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:36.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:36.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:36.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:36.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:36.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.269][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:36.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:36.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:36.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:36.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:36.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.278][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:36.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:36.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:36.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:36.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:36.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.289][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodbChebi/definitions.yml".
biodb.DEBUG[2022-01-20 10:36:36.292][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2022-01-20 10:36:36.296][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-20 10:36:36.298][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-01-20 10:36:36.300][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:36.302][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 10:36:36.304][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:36.305][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 10:36:36.306][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:36.308][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2022-01-20 10:36:36.309][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-01-20 10:36:36.310][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 10:36:36.312][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:36.314][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2022-01-20 10:36:36.317][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 10:36:36.319][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2022-01-20 10:36:36.319][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2022-01-20 10:36:36.319][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2022-01-20 10:36:36.319][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2022-01-20 10:36:36.319][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2022-01-20 10:36:36.319][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2022-01-20 10:36:36.319][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2022-01-20 10:36:36.319][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2022-01-20 10:36:36.319][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2022-01-20 10:36:36.319][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2022-01-20 10:36:36.319][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2022-01-20 10:36:36.321][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-01-20 10:36:36.353][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-20 10:36:36.353][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 10:36:36.353][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-20 10:36:36.355][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-01-20 10:36:36.357][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 10:36:36.359][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 10:36:36.361][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 10:36:36.363][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 10:36:36.365][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 10:36:36.367][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 10:36:36.369][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2022-01-20 10:36:36.369][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2022-01-20 10:36:36.371][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 10:36:36.373][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 10:36:36.374][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:36.376][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2022-01-20 10:36:36.376][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2022-01-20 10:36:36.388][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-01-20 10:36:36.392][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-01-20 10:36:36.395][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2022-01-20 10:36:36.398][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-01-20 10:36:36.401][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-01-20 10:36:36.405][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-01-20 10:36:36.412][super$initialize] Initialize connector chebi.
biodb.DEBUG[2022-01-20 10:36:36.414][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2022-01-20 10:36:36.416][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2022-01-20 10:36:36.419][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2022-01-20 10:36:36.421][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-01-20 10:36:36.423][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-01-20 10:36:36.425][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2022-01-20 10:36:36.433][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2022-01-20 10:36:36.436][biodb::testThat] 
biodb.INFO [2022-01-20 10:36:36.437][biodb::testThat] Running test function  test_chebi_convCasToChebi  (" convCasToChebi() works. ").
biodb.INFO [2022-01-20 10:36:36.439][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 10:36:36.440][biodb::testThat] 
biodb.DEBUG[2022-01-20 10:36:36.447][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2022-01-20 10:36:36.453][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:36:36.455][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2022-01-20 10:36:36.458][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:36:36.461][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2022-01-20 10:36:36.466][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:36:36.470][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:36:36.472][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2022-01-20 10:36:36.474][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:36:36.478][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2022-01-20 10:36:36.481][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:36.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:36.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:36.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:36.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:36.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.499][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:36:36.505][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:36:36.507][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2022-01-20 10:36:36.510][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:36:36.513][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2022-01-20 10:36:36.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:36.518][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:36.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:36.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:36.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:36.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:36.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:36.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:36.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:36.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:36.605][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.614][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:36:36.620][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:36:36.622][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2022-01-20 10:36:36.625][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:36:36.627][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2022-01-20 10:36:36.630][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:36.632][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:36.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:36.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:36.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:36.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.644][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:36:36.649][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:36:36.651][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2022-01-20 10:36:36.653][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:36:36.655][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2022-01-20 10:36:36.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:36.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:36.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:36.665][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:36.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:36.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:36.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:36.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:36.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:36.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:36.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.687][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:36:36.693][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:36:36.694][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2022-01-20 10:36:36.697][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:36:36.700][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2022-01-20 10:36:36.703][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:36.704][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:36.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:36.709][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:36.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:36.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.718][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:36:36.723][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:36:36.726][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2022-01-20 10:36:36.729][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:36:36.732][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2022-01-20 10:36:36.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:36.737][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:36.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:36.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:36.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:36.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.751][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:36:36.757][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:36:36.760][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70e3912746e7e39b39fbbffe6c90b502".
biodb.TRACE[2022-01-20 10:36:36.762][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:36:36.764][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70e3912746e7e39b39fbbffe6c90b502.content".
biodb.DEBUG[2022-01-20 10:36:36.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:36.768][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:36.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:36.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:36.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:36.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-01-20 10:36:36.786][biodb::testThat] 
biodb.INFO [2022-01-20 10:36:36.787][biodb::testThat] Running test function  test_chebi_convInchiToChebi  (" convInchiToChebi() works. ").
biodb.INFO [2022-01-20 10:36:36.789][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-01-20 10:36:36.791][biodb::testThat] 
biodb.DEBUG[2022-01-20 10:36:36.796][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI=1S/C15H24/c1-9(2)11-7-8-15(4)12-6-5-10(3)14(15)13(11)12/h5,9,11-14H,6-8H2,1-4H3/t11?,12?,13?,14?,15-/m0/s1&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:36:36.801][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:36:36.810][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3d0a94707e73df0ba810a5a87df958c6".
biodb.TRACE[2022-01-20 10:36:36.812][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:36:36.815][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/3d0a94707e73df0ba810a5a87df958c6.content".
biodb.DEBUG[2022-01-20 10:36:36.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:36.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:36.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:36.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:36.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:36.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.837][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2022-01-20 10:36:36.842][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-01-20 10:36:36.845][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c23a09621704f6dcea62f90283def982".
biodb.TRACE[2022-01-20 10:36:36.847][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-01-20 10:36:36.849][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c23a09621704f6dcea62f90283def982.content".
biodb.DEBUG[2022-01-20 10:36:36.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-01-20 10:36:36.854][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:36.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:36.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:36.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:36.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-01-20 10:36:36.869][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-01-20 10:36:36.871][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2022-01-20 10:36:36.873][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2022-01-20 10:36:36.875][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-01-20 10:36:36.877][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:36.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:36.881][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:36.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:36.884][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-01-20 10:36:36.891][biodb::testContext] 
biodb.INFO [2022-01-20 10:36:36.893][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-20 10:36:36.895][biodb::testContext] Test context - Test web services
biodb.INFO [2022-01-20 10:36:36.897][biodb::testContext] ********************************************************************************
biodb.INFO [2022-01-20 10:36:36.898][biodb::testContext] 
biodb.INFO [2022-01-20 10:36:36.910][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.2.2.
biodb.DEBUG[2022-01-20 10:36:36.912][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.1/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2022-01-20 10:36:36.917][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-20 10:36:36.918][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-01-20 10:36:36.919][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-01-20 10:36:36.921][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:36.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.925][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-01-20 10:36:36.926][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-01-20 10:36:36.928][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:36.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.932][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-01-20 10:36:36.934][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-01-20 10:36:36.936][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:36.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.942][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-01-20 10:36:36.944][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-01-20 10:36:36.946][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-01-20 10:36:36.948][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:36.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.952][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-01-20 10:36:36.954][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-01-20 10:36:36.955][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-01-20 10:36:36.957][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:36.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.962][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-01-20 10:36:36.964][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-01-20 10:36:36.966][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:36.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.971][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-01-20 10:36:36.973][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-01-20 10:36:36.976][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-01-20 10:36:36.978][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:36.980][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.983][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-01-20 10:36:36.985][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-01-20 10:36:36.986][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:36.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:36.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:36.991][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-01-20 10:36:36.993][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-01-20 10:36:36.995][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-01-20 10:36:36.996][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:36.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.001][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-01-20 10:36:37.003][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-01-20 10:36:37.004][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-01-20 10:36:37.006][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-01-20 10:36:37.007][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-01-20 10:36:37.009][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-01-20 10:36:37.010][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.015][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-01-20 10:36:37.017][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-01-20 10:36:37.019][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.024][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-01-20 10:36:37.027][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-01-20 10:36:37.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.034][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-01-20 10:36:37.036][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-01-20 10:36:37.038][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.042][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-01-20 10:36:37.044][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-01-20 10:36:37.046][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.050][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-01-20 10:36:37.052][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-01-20 10:36:37.054][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.059][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-01-20 10:36:37.061][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-01-20 10:36:37.073][self$set] Set key svn.binary.path to "/usr/bin/svn".
biodb.DEBUG[2022-01-20 10:36:37.075][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.082][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-01-20 10:36:37.084][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-01-20 10:36:37.087][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-01-20 10:36:37.088][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.093][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-01-20 10:36:37.096][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-20 10:36:37.097][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-01-20 10:36:37.100][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:37.102][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 10:36:37.104][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:37.106][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 10:36:37.108][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 10:36:37.110][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 10:36:37.112][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-20 10:36:37.114][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 10:36:37.116][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:37.118][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-01-20 10:36:37.120][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 10:36:37.122][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:36:37.124][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:37.126][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-20 10:36:37.126][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 10:36:37.126][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-20 10:36:37.126][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-20 10:36:37.126][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-20 10:36:37.129][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 10:36:37.131][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 10:36:37.133][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 10:36:37.145][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 10:36:37.147][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 10:36:37.149][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 10:36:37.151][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 10:36:37.153][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:36:37.155][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 10:36:37.157][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 10:36:37.159][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 10:36:37.160][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:36:37.163][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-01-20 10:36:37.166][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-01-20 10:36:37.168][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-01-20 10:36:37.170][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:37.171][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 10:36:37.173][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:37.174][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 10:36:37.175][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 10:36:37.178][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 10:36:37.180][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-20 10:36:37.182][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 10:36:37.184][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:37.186][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-01-20 10:36:37.187][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 10:36:37.188][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:36:37.189][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:37.190][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-01-20 10:36:37.190][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-01-20 10:36:37.190][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-01-20 10:36:37.190][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-01-20 10:36:37.190][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-01-20 10:36:37.192][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 10:36:37.194][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 10:36:37.195][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 10:36:37.197][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 10:36:37.199][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 10:36:37.201][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 10:36:37.203][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 10:36:37.205][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:36:37.207][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 10:36:37.209][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 10:36:37.211][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 10:36:37.214][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:36:37.215][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-01-20 10:36:37.218][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:37.220][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-01-20 10:36:37.222][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:37.224][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 10:36:37.226][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:37.228][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 10:36:37.229][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 10:36:37.231][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 10:36:37.233][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-01-20 10:36:37.235][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 10:36:37.237][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-20 10:36:37.238][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-01-20 10:36:37.240][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 10:36:37.243][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:36:37.245][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:37.247][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:36:37.249][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 10:36:37.251][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 10:36:37.253][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 10:36:37.255][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 10:36:37.257][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 10:36:37.259][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 10:36:37.261][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 10:36:37.263][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:36:37.265][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 10:36:37.266][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 10:36:37.268][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 10:36:37.270][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:36:37.273][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-01-20 10:36:37.276][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:37.278][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-01-20 10:36:37.280][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:37.281][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-01-20 10:36:37.283][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:37.285][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-01-20 10:36:37.286][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-01-20 10:36:37.288][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-01-20 10:36:37.291][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-01-20 10:36:37.293][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-01-20 10:36:37.295][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-01-20 10:36:37.297][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-01-20 10:36:37.299][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-01-20 10:36:37.301][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:36:37.303][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-01-20 10:36:37.305][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:36:37.306][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-01-20 10:36:37.308][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 10:36:37.310][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 10:36:37.311][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-01-20 10:36:37.313][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-01-20 10:36:37.315][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-01-20 10:36:37.316][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-01-20 10:36:37.318][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:36:37.319][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-01-20 10:36:37.321][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-01-20 10:36:37.322][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-01-20 10:36:37.324][self$setPropertyValue] 
biodb.DEBUG[2022-01-20 10:36:37.326][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-20 10:36:37.327][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.331][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:37.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:37.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.340][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:37.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:37.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.348][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:37.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:37.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.356][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:37.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:37.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.365][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:37.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:37.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:37.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:37.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.381][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:37.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:37.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.390][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:37.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:37.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.400][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:37.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:37.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.408][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:37.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:37.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.415][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:37.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:37.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:37.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:37.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.432][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:37.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:37.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:37.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:37.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:37.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:37.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.459][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:37.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:37.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.468][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:37.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:37.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.477][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-01-20 10:36:37.480][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-01-20 10:36:37.483][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-01-20 10:36:37.487][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-01-20 10:36:37.490][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-01-20 10:36:37.492][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-01-20 10:36:37.495][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-01-20 10:36:37.498][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-01-20 10:36:37.501][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-01-20 10:36:37.503][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-01-20 10:36:37.505][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-01-20 10:36:37.508][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-01-20 10:36:37.510][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-01-20 10:36:37.513][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-01-20 10:36:37.516][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-01-20 10:36:37.519][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-01-20 10:36:37.521][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-01-20 10:36:37.523][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-01-20 10:36:37.526][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-01-20 10:36:37.528][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-01-20 10:36:37.530][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-01-20 10:36:37.532][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-01-20 10:36:37.535][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-01-20 10:36:37.538][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-01-20 10:36:37.541][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-01-20 10:36:37.543][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-01-20 10:36:37.544][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-01-20 10:36:37.546][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-01-20 10:36:37.547][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-01-20 10:36:37.549][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-01-20 10:36:37.551][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-01-20 10:36:37.553][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-01-20 10:36:37.556][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-01-20 10:36:37.559][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-01-20 10:36:37.562][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-01-20 10:36:37.563][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-01-20 10:36:37.565][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-01-20 10:36:37.567][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-01-20 10:36:37.568][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-01-20 10:36:37.570][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-01-20 10:36:37.572][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-01-20 10:36:37.573][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-01-20 10:36:37.576][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-01-20 10:36:37.579][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-01-20 10:36:37.582][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-01-20 10:36:37.585][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-01-20 10:36:37.587][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-01-20 10:36:37.590][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-01-20 10:36:37.592][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-01-20 10:36:37.596][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-01-20 10:36:37.599][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-01-20 10:36:37.602][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-01-20 10:36:37.606][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-01-20 10:36:37.609][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-01-20 10:36:37.612][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-01-20 10:36:37.615][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-01-20 10:36:37.618][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-01-20 10:36:37.620][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-01-20 10:36:37.623][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-01-20 10:36:37.626][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-01-20 10:36:37.629][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-01-20 10:36:37.632][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-01-20 10:36:37.634][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-01-20 10:36:37.637][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-01-20 10:36:37.640][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-01-20 10:36:37.642][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-01-20 10:36:37.645][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-01-20 10:36:37.648][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-01-20 10:36:37.651][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-01-20 10:36:37.653][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-01-20 10:36:37.656][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-01-20 10:36:37.659][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-01-20 10:36:37.662][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-01-20 10:36:37.664][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-01-20 10:36:37.667][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-01-20 10:36:37.670][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-01-20 10:36:37.673][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-01-20 10:36:37.676][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-01-20 10:36:37.678][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-01-20 10:36:37.681][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-01-20 10:36:37.684][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-01-20 10:36:37.687][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-01-20 10:36:37.690][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-01-20 10:36:37.693][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-01-20 10:36:37.696][initialize] This is biodb version 1.2.2.
biodb.DEBUG[2022-01-20 10:36:37.698][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-01-20 10:36:37.699][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:37.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:37.701][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.713][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:37.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:37.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:37.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:37.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:37.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:37.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:37.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:37.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.733][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:37.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:37.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:37.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:37.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.753][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:37.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:37.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:37.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:37.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.766][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:37.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:37.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:37.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:37.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.778][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:37.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:37.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:37.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:37.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.790][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:37.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:37.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:37.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:37.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.804][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:37.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:37.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:37.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:37.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.817][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:37.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:37.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:37.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:37.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.829][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:37.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:37.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:37.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:37.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.840][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-01-20 10:36:37.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-01-20 10:36:37.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-01-20 10:36:37.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-01-20 10:36:37.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-01-20 10:36:37.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-01-20 10:36:37.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-01-20 10:36:37.851][notifyObservers] Notify observers for notifyCfgUpdate.
biod