############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/bioCancer_1.22.0.tar.gz && rm -rf bioCancer.buildbin-libdir && mkdir bioCancer.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bioCancer.buildbin-libdir bioCancer_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL bioCancer_1.22.0.zip && rm bioCancer_1.22.0.tar.gz bioCancer_1.22.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 3 6715k 3 238k 0 0 698k 0 0:00:09 --:--:-- 0:00:09 699k 26 6715k 26 1795k 0 0 1333k 0 0:00:05 0:00:01 0:00:04 1332k 63 6715k 63 4288k 0 0 1849k 0 0:00:03 0:00:02 0:00:01 1850k 100 6715k 100 6715k 0 0 2192k 0 0:00:03 0:00:03 --:--:-- 2193k install for i386 * installing *source* package 'bioCancer' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'bioCancer' finding HTML links ... done AnnotationFuncs-package html Edges_Diseases_obj html Mutation_obj html Node_Diseases_obj html Node_df_FreqIn html Node_obj_CNA_ProfData html Node_obj_FreqIn html Node_obj_Met_ProfData html Node_obj_mRNA_Classifier html Studies_obj html UnifyRowNames html attriColorGene html attriColorValue html attriColorVector html attriShape2Gene html attriShape2Node html bioCancer html checkDimensions html coffeewheel html coffeewheelOutput html displayTable html dot-dbEscapeString html dot-getTableName html dot-pickRef html epiGenomics html findPhantom html getEvidenceCodes html getFreqMutData html getGenesClassification html getListProfData html getList_Cases html getList_GenProfs html getMegaProfData html getOrthologs html getSequensed_SampleSize html grepRef html mapLists html metabologram html metabologramOutput html pickGO html pickRefSeq html reStrColorGene html reStrDimension html reStrDisease html removeNAs html renderCoffeewheel html renderMetabologram html returnTextAreaInput html switchButton html translate html user_CNA html user_MetHM27 html user_MetHM450 html user_Mut html user_mRNA html whichGeneList html widgetThumbnail html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'bioCancer' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'bioCancer' as bioCancer_1.22.0.zip * DONE (bioCancer) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'bioCancer' successfully unpacked and MD5 sums checked