############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/bgx_1.60.0.tar.gz && rm -rf bgx.buildbin-libdir && mkdir bgx.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bgx.buildbin-libdir bgx_1.60.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL bgx_1.60.0.zip && rm bgx_1.60.0.tar.gz bgx_1.60.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 16 1100k 16 179k 0 0 397k 0 0:00:02 --:--:-- 0:00:02 397k 100 1100k 100 1100k 0 0 822k 0 0:00:01 0:00:01 --:--:-- 823k install for i386 * installing *source* package 'bgx' ... ** using staged installation Untarring Boost header files... ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I ../boostIncl -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -DUSING_R -ffast-math -O3 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bgx.cc -o bgx.o In file included from ../boostIncl/boost/config.hpp:57, from ../boostIncl/boost/random/linear_congruential.hpp:22, from ../boostIncl/boost/random.hpp:36, from rand.hh:32, from bgx.cc:32: ../boostIncl/boost/random/detail/const_mod.hpp: In static member function 'static IntType boost::random::const_mod::invert_euclidian(IntType)': ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_148' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/detail/const_mod.hpp:148:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(m > 0); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_152' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/detail/const_mod.hpp:152:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(boost::integer_traits::is_signed); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/linear_congruential.hpp: In constructor 'boost::random::linear_congruential::linear_congruential(IntType)': ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_63' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/linear_congruential.hpp:63:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/inversive_congruential.hpp: In constructor 'boost::random::inversive_congruential::inversive_congruential(IntType)': ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_50' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/inversive_congruential.hpp:50:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(b >= 0); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_51' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/inversive_congruential.hpp:51:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(p > 1); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_52' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/inversive_congruential.hpp:52:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(a >= 1); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/shuffle_output.hpp: In member function 'void boost::random::shuffle_output::init()': ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_124' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/shuffle_output.hpp:124:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/mersenne_twister.hpp: In member function 'void boost::random::mersenne_twister::seed(Generator&)': ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_99' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/mersenne_twister.hpp:99:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(!std::numeric_limits::is_signed); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/subtract_with_carry.hpp: In constructor 'boost::random::subtract_with_carry::subtract_with_carry()': ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_83' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/subtract_with_carry.hpp:83:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(std::numeric_limits::is_signed); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_84' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/subtract_with_carry.hpp:84:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/linear_feedback_shift.hpp: In constructor 'boost::random::linear_feedback_shift::linear_feedback_shift(UIntType)': ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_55' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/linear_feedback_shift.hpp:55:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_56' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/linear_feedback_shift.hpp:56:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(!std::numeric_limits::is_signed); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/linear_feedback_shift.hpp: In constructor 'boost::random::linear_feedback_shift::linear_feedback_shift(It&, It)': ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_69' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/linear_feedback_shift.hpp:69:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_70' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/linear_feedback_shift.hpp:70:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(!std::numeric_limits::is_signed); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/xor_combine.hpp: In member function 'boost::random::xor_combine::result_type boost::random::xor_combine::operator()()': ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_67' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/xor_combine.hpp:67:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_68' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/xor_combine.hpp:68:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_69' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/xor_combine.hpp:69:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(std::numeric_limits::digits >= std::numeric_limits::digits); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/uniform_smallint.hpp: In constructor 'boost::detail::uniform_smallint_float::uniform_smallint_float(boost::detail::uniform_smallint_float::base_type&, IntType, IntType)': ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_121' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/uniform_smallint.hpp:121:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_122' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/uniform_smallint.hpp:122:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(!std::numeric_limits::is_integer); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/uniform_smallint.hpp: In constructor 'boost::uniform_smallint::uniform_smallint(IntType, IntType)': ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_170' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/uniform_smallint.hpp:170:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/uniform_int.hpp: In constructor 'boost::uniform_int::uniform_int(IntType, IntType)': ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_47' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/uniform_int.hpp:47:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/random_number_generator.hpp: In constructor 'boost::random_number_generator::random_number_generator(boost::random_number_generator::base_type&)': ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_38' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/random_number_generator.hpp:38:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/uniform_real.hpp: In constructor 'boost::uniform_real::uniform_real(RealType, RealType)': ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_41' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/uniform_real.hpp:41:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(!std::numeric_limits::is_integer); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/poisson_distribution.hpp: In constructor 'boost::poisson_distribution::poisson_distribution(const RealType&)': ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_38' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/poisson_distribution.hpp:38:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_39' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/poisson_distribution.hpp:39:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(!std::numeric_limits::is_integer); ^~~~~~~~~~~~~~~~~~~ In file included from bgx.cc:32: rand.hh: In member function 'RealType Rand::Normal()': rand.hh:399:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(u0<.5) return y; return -y; ^~ rand.hh:399:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if(u0<.5) return y; return -y; ^~~~~~ rand.hh:406:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(u0<.5) return y; return -y; ^~ rand.hh:406:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if(u0<.5) return y; return -y; ^~~~~~ rand.hh:413:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(u0<.5) return y; return -y; ^~ rand.hh:413:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if(u0<.5) return y; return -y; ^~~~~~ rand.hh:420:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(u0<.5) return y; return -y; ^~ rand.hh:420:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if(u0<.5) return y; return -y; ^~~~~~ "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I ../boostIncl -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -DUSING_R -ffast-math -O3 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bgx_frontend.cc -o bgx_frontend.o "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I ../boostIncl -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -DUSING_R -ffast-math -O3 -std=c99 -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c qnorm.c -o qnorm.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I ../boostIncl -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -DUSING_R -ffast-math -O3 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rundir.cc -o rundir.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I ../boostIncl -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -DUSING_R -ffast-math -O3 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sokal.cc -o sokal.o C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o bgx.dll tmp.def bgx.o bgx_frontend.o qnorm.o rundir.o sokal.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/bgx.buildbin-libdir/00LOCK-bgx/00new/bgx/libs/i386 ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'bgx' finding HTML links ... done analysis.bgx html bgx html mcmc.bgx html readOutput.bgx html saveAffinityPlot.bgx html setupVars.bgx html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'bgx' ... Untarring Boost header files... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I ../boostIncl -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -DUSING_R -ffast-math -O3 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bgx.cc -o bgx.o In file included from ../boostIncl/boost/config.hpp:57, from ../boostIncl/boost/random/linear_congruential.hpp:22, from ../boostIncl/boost/random.hpp:36, from rand.hh:32, from bgx.cc:32: ../boostIncl/boost/random/detail/const_mod.hpp: In static member function 'static IntType boost::random::const_mod::invert_euclidian(IntType)': ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_148' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/detail/const_mod.hpp:148:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(m > 0); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_152' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/detail/const_mod.hpp:152:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(boost::integer_traits::is_signed); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/linear_congruential.hpp: In constructor 'boost::random::linear_congruential::linear_congruential(IntType)': ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_63' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/linear_congruential.hpp:63:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/inversive_congruential.hpp: In constructor 'boost::random::inversive_congruential::inversive_congruential(IntType)': ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_50' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/inversive_congruential.hpp:50:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(b >= 0); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_51' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/inversive_congruential.hpp:51:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(p > 1); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_52' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/inversive_congruential.hpp:52:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(a >= 1); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/shuffle_output.hpp: In member function 'void boost::random::shuffle_output::init()': ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_124' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/shuffle_output.hpp:124:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/mersenne_twister.hpp: In member function 'void boost::random::mersenne_twister::seed(Generator&)': ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_99' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/mersenne_twister.hpp:99:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(!std::numeric_limits::is_signed); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/subtract_with_carry.hpp: In constructor 'boost::random::subtract_with_carry::subtract_with_carry()': ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_83' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/subtract_with_carry.hpp:83:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(std::numeric_limits::is_signed); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_84' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/subtract_with_carry.hpp:84:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/linear_feedback_shift.hpp: In constructor 'boost::random::linear_feedback_shift::linear_feedback_shift(UIntType)': ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_55' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/linear_feedback_shift.hpp:55:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_56' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/linear_feedback_shift.hpp:56:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(!std::numeric_limits::is_signed); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/linear_feedback_shift.hpp: In constructor 'boost::random::linear_feedback_shift::linear_feedback_shift(It&, It)': ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_69' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/linear_feedback_shift.hpp:69:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_70' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/linear_feedback_shift.hpp:70:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(!std::numeric_limits::is_signed); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/xor_combine.hpp: In member function 'boost::random::xor_combine::result_type boost::random::xor_combine::operator()()': ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_67' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/xor_combine.hpp:67:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_68' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/xor_combine.hpp:68:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_69' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/xor_combine.hpp:69:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(std::numeric_limits::digits >= std::numeric_limits::digits); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/uniform_smallint.hpp: In constructor 'boost::detail::uniform_smallint_float::uniform_smallint_float(boost::detail::uniform_smallint_float::base_type&, IntType, IntType)': ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_121' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/uniform_smallint.hpp:121:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_122' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/uniform_smallint.hpp:122:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(!std::numeric_limits::is_integer); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/uniform_smallint.hpp: In constructor 'boost::uniform_smallint::uniform_smallint(IntType, IntType)': ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_170' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/uniform_smallint.hpp:170:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/uniform_int.hpp: In constructor 'boost::uniform_int::uniform_int(IntType, IntType)': ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_47' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/uniform_int.hpp:47:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/random_number_generator.hpp: In constructor 'boost::random_number_generator::random_number_generator(boost::random_number_generator::base_type&)': ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_38' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/random_number_generator.hpp:38:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/uniform_real.hpp: In constructor 'boost::uniform_real::uniform_real(RealType, RealType)': ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_41' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/uniform_real.hpp:41:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(!std::numeric_limits::is_integer); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/random/poisson_distribution.hpp: In constructor 'boost::poisson_distribution::poisson_distribution(const RealType&)': ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_38' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/poisson_distribution.hpp:38:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(std::numeric_limits::is_integer); ^~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:21: warning: typedef 'boost_static_assert_typedef_39' locally defined but not used [-Wunused-local-typedefs] BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../boostIncl/boost/config/suffix.hpp:523:32: note: in definition of macro 'BOOST_DO_JOIN2' #define BOOST_DO_JOIN2( X, Y ) X##Y ^ ../boostIncl/boost/config/suffix.hpp:521:28: note: in expansion of macro 'BOOST_DO_JOIN' #define BOOST_JOIN( X, Y ) BOOST_DO_JOIN( X, Y ) ^~~~~~~~~~~~~ ../boostIncl/boost/static_assert.hpp:105:10: note: in expansion of macro 'BOOST_JOIN' BOOST_JOIN(boost_static_assert_typedef_, __LINE__) ^~~~~~~~~~ ../boostIncl/boost/random/poisson_distribution.hpp:39:5: note: in expansion of macro 'BOOST_STATIC_ASSERT' BOOST_STATIC_ASSERT(!std::numeric_limits::is_integer); ^~~~~~~~~~~~~~~~~~~ In file included from bgx.cc:32: rand.hh: In member function 'RealType Rand::Normal()': rand.hh:399:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(u0<.5) return y; return -y; ^~ rand.hh:399:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if(u0<.5) return y; return -y; ^~~~~~ rand.hh:406:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(u0<.5) return y; return -y; ^~ rand.hh:406:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if(u0<.5) return y; return -y; ^~~~~~ rand.hh:413:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(u0<.5) return y; return -y; ^~ rand.hh:413:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if(u0<.5) return y; return -y; ^~~~~~ rand.hh:420:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(u0<.5) return y; return -y; ^~ rand.hh:420:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if(u0<.5) return y; return -y; ^~~~~~ "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I ../boostIncl -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -DUSING_R -ffast-math -O3 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bgx_frontend.cc -o bgx_frontend.o "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I ../boostIncl -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -DUSING_R -ffast-math -O3 -std=c99 -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c qnorm.c -o qnorm.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I ../boostIncl -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -DUSING_R -ffast-math -O3 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rundir.cc -o rundir.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I ../boostIncl -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -DUSING_R -ffast-math -O3 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sokal.cc -o sokal.o C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o bgx.dll tmp.def bgx.o bgx_frontend.o qnorm.o rundir.o sokal.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/bgx.buildbin-libdir/bgx/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'bgx' as bgx_1.60.0.zip * DONE (bgx) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'bgx' successfully unpacked and MD5 sums checked