############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf benchdamic.buildbin-libdir && mkdir benchdamic.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=benchdamic.buildbin-libdir benchdamic_1.0.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'benchdamic' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi' ** help *** installing help indices converting help for package 'benchdamic' finding HTML links ... done DA_ALDEx2 html DA_DESeq2 html DA_MAST html DA_Seurat html DA_corncob html DA_edgeR html DA_limma html DA_metagenomeSeq html RMSE html addKnowledge html areaCAT html checkNormalization html createColors html createConcordance html createEnrichment html createMocks html createPositives html createSplits html createTIEC html enrichmentTest html extractDA html extractStatistics html fitDM html finding level-2 HTML links ... done fitHURDLE html fitModels html fitNB html fitZIG html fitZINB html getDA html getPositives html getStatistics html iterative_ordering html meanDifferences html microbial_metabolism html norm_CSS html norm_DESeq2 html norm_TSS html norm_edgeR html plotConcordance html plotConcordanceDendrogram html plotConcordanceHeatmap html plotContingency html plotEnrichment html plotFPR html plotKS html plotMD html plotMutualFindings html plotPositives html plotQQ html plotRMSE html prepareObserved html ps_plaque_16S html ps_stool_16S html runDA html runMocks html runNormalizations html runSplits html setNormalizations html set_ALDEx2 html set_DESeq2 html set_MAST html set_Seurat html set_corncob html set_edgeR html set_limma html set_metagenomeSeq html weights_ZINB html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi' ** testing if installed package can be loaded from final location No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'benchdamic' ... ** testing if installed package can be loaded No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi' * MD5 sums packaged installation of 'benchdamic' as benchdamic_1.0.0.zip * DONE (benchdamic)