############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/bayNorm_1.12.0.tar.gz && rm -rf bayNorm.buildbin-libdir && mkdir bayNorm.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bayNorm.buildbin-libdir bayNorm_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL bayNorm_1.12.0.zip && rm bayNorm_1.12.0.tar.gz bayNorm_1.12.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 13 1334k 13 180k 0 0 786k 0 0:00:01 --:--:-- 0:00:01 787k 100 1334k 100 1334k 0 0 1558k 0 --:--:-- --:--:-- --:--:-- 1557k install for i386 * installing *source* package 'bayNorm' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bayNorm_main.cpp -o bayNorm_main.o bayNorm_main.cpp: In function 'Rcpp::List EstPrior_sprcpp(arma::sp_mat)': bayNorm_main.cpp:1374:7: warning: variable 'Nrows' set but not used [-Wunused-but-set-variable] int Nrows; ^~~~~ bayNorm_main.cpp: In function 'Rcpp::List EstPrior_rcpp(Rcpp::NumericMatrix)': bayNorm_main.cpp:1427:7: warning: variable 'Nrows' set but not used [-Wunused-but-set-variable] int Nrows; ^~~~~ C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o bayNorm.dll tmp.def RcppExports.o bayNorm_main.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/bayNorm.buildbin-libdir/00LOCK-bayNorm/00new/bayNorm/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'bayNorm' finding HTML links ... done AdjustSIZE_fun html BB_Fun html BetaFun html Check_input html DownSampling html EXAMPLE_DATA_list html EstPrior html EstPrior_rcpp html EstPrior_sprcpp html NOISY_FUN html Prior_fun html SyntheticControl html asMatrix html as_matrix html bayNorm html bayNorm_sup html noisy_gene_detection html t_sp html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'bayNorm' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppProgress/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bayNorm_main.cpp -o bayNorm_main.o bayNorm_main.cpp: In function 'Rcpp::List EstPrior_sprcpp(arma::sp_mat)': bayNorm_main.cpp:1374:7: warning: variable 'Nrows' set but not used [-Wunused-but-set-variable] int Nrows; ^~~~~ bayNorm_main.cpp: In function 'Rcpp::List EstPrior_rcpp(Rcpp::NumericMatrix)': bayNorm_main.cpp:1427:7: warning: variable 'Nrows' set but not used [-Wunused-but-set-variable] int Nrows; ^~~~~ C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o bayNorm.dll tmp.def RcppExports.o bayNorm_main.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/bayNorm.buildbin-libdir/bayNorm/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'bayNorm' as bayNorm_1.12.0.zip * DONE (bayNorm) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'bayNorm' successfully unpacked and MD5 sums checked