############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/atSNP_1.10.0.tar.gz && rm -rf atSNP.buildbin-libdir && mkdir atSNP.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=atSNP.buildbin-libdir atSNP_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL atSNP_1.10.0.zip && rm atSNP_1.10.0.tar.gz atSNP_1.10.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 88 514k 88 454k 0 0 1098k 0 --:--:-- --:--:-- --:--:-- 1098k 100 514k 100 514k 0 0 1141k 0 --:--:-- --:--:-- --:--:-- 1140k install for i386 * installing *source* package 'atSNP' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ImportanceSample.cpp -o ImportanceSample.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ImportanceSampleChange.cpp -o ImportanceSampleChange.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ImportanceSampleDiff.cpp -o ImportanceSampleDiff.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c MotifScore.cpp -o MotifScore.o C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o atSNP.dll tmp.def ImportanceSample.o ImportanceSampleChange.o ImportanceSampleDiff.o MotifScore.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/atSNP.buildbin-libdir/00LOCK-atSNP/00new/atSNP/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'atSNP' finding HTML links ... done ComputeMotifScore html ComputePValues html GetIUPACSequence html LoadFastaData html LoadMotifLibrary html LoadSNPData html MatchSubsequence html atSNP-package html dtMotifMatch html encode_motif html encode_motifinfo html jaspar_motif html jaspar_motifinfo html motif_library html motif_match html motif_scores html plotMotifMatch html prior html snpInfo html snp_tbl html transition html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'atSNP' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ImportanceSample.cpp -o ImportanceSample.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ImportanceSampleChange.cpp -o ImportanceSampleChange.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ImportanceSampleDiff.cpp -o ImportanceSampleDiff.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c MotifScore.cpp -o MotifScore.o C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o atSNP.dll tmp.def ImportanceSample.o ImportanceSampleChange.o ImportanceSampleDiff.o MotifScore.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/atSNP.buildbin-libdir/atSNP/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'atSNP' as atSNP_1.10.0.zip * DONE (atSNP) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'atSNP' successfully unpacked and MD5 sums checked