Back to Multiple platform build/check report for BioC 3.14
[A]BCDEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2022-04-13 12:07:37 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for annmap on machv2


To the developers/maintainers of the annmap package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/annmap.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 58/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
annmap 1.36.99  (landing page)
Chris Wirth
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/annmap
git_branch: RELEASE_3_14
git_last_commit: bd06715
git_last_commit_date: 2022-01-20 08:46:33 -0400 (Thu, 20 Jan 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64... NOT SUPPORTED ...
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: annmap
Version: 1.36.99
Command: rm -rf annmap.buildbin-libdir && mkdir annmap.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh annmap_1.36.99.tar.gz /Library/Frameworks/R.framework/Resources/bin/R annmap.buildbin-libdir
StartedAt: 2022-04-12 20:18:34 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 20:19:21 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 46.2 seconds
RetCode: 0
Status:   OK  
PackageFile: annmap_1.36.99.tgz
PackageFileSize: 1.156 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf annmap.buildbin-libdir && mkdir annmap.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh annmap_1.36.99.tar.gz /Library/Frameworks/R.framework/Resources/bin/R annmap.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=annmap.buildbin-libdir annmap_1.36.99.tar.gz'
>>>>>>> 

* installing *source* package ‘annmap’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
in method for ‘probesetInRange’ with signature ‘x="RangedData"’: no definition for class “RangedData”
in method for ‘probeInRange’ with signature ‘x="RangedData"’: no definition for class “RangedData”
in method for ‘proteinInRange’ with signature ‘x="RangedData"’: no definition for class “RangedData”
in method for ‘domainInRange’ with signature ‘x="RangedData"’: no definition for class “RangedData”
in method for ‘geneInRange’ with signature ‘x="RangedData"’: no definition for class “RangedData”
in method for ‘transcriptInRange’ with signature ‘x="RangedData"’: no definition for class “RangedData”
in method for ‘exonInRange’ with signature ‘x="RangedData"’: no definition for class “RangedData”
in method for ‘estGeneInRange’ with signature ‘x="RangedData"’: no definition for class “RangedData”
in method for ‘estTranscriptInRange’ with signature ‘x="RangedData"’: no definition for class “RangedData”
in method for ‘estExonInRange’ with signature ‘x="RangedData"’: no definition for class “RangedData”
in method for ‘predictionTranscriptInRange’ with signature ‘x="RangedData"’: no definition for class “RangedData”
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (annmap)