############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/altcdfenvs_2.56.0.tar.gz && rm -rf altcdfenvs.buildbin-libdir && mkdir altcdfenvs.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=altcdfenvs.buildbin-libdir altcdfenvs_2.56.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL altcdfenvs_2.56.0.zip && rm altcdfenvs_2.56.0.tar.gz altcdfenvs_2.56.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 49797 100 49797 0 0 253k 0 --:--:-- --:--:-- --:--:-- 253k install for i386 * installing *source* package 'altcdfenvs' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading NOTE: arguments in definition for validity method for class 'AffyProbesMatch' changed from (obj) to (object) in method for 'toHypergraph' with signature '"CdfEnvAffy"': no definition for class "CdfEnvAffy" ** help *** installing help indices converting help for package 'altcdfenvs' finding HTML links ... done AffyProbesMatch-class html CdfEnvAffy-class html appendCdfEnvAffy html buildCdfEnv.biostrings html cdfenv html cdfenvEx html copyCdfEnvAffy html countduplicated html geneNames html getxy.probeseq html index2xy html indexProbes.CdfEnvAffy html matchAffyProbes html plot.CdfEnvAffy html removeIndex html toHypergraph html unique.CdfEnvAffy html utils.FASTA html validAffyBatch html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'altcdfenvs' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'altcdfenvs' as altcdfenvs_2.56.0.zip * DONE (altcdfenvs) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'altcdfenvs' successfully unpacked and MD5 sums checked