Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:09 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for alpine on tokay2


To the developers/maintainers of the alpine package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/alpine.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 44/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
alpine 1.20.0  (landing page)
Michael Love
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/alpine
git_branch: RELEASE_3_14
git_last_commit: 9348ef1
git_last_commit_date: 2021-10-26 12:29:39 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: alpine
Version: 1.20.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/alpine_1.20.0.tar.gz && rm -rf alpine.buildbin-libdir && mkdir alpine.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=alpine.buildbin-libdir alpine_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL alpine_1.20.0.zip && rm alpine_1.20.0.tar.gz alpine_1.20.0.zip
StartedAt: 2022-04-12 06:14:31 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 06:16:43 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 132.0 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/alpine_1.20.0.tar.gz && rm -rf alpine.buildbin-libdir && mkdir alpine.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=alpine.buildbin-libdir alpine_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL alpine_1.20.0.zip && rm alpine_1.20.0.tar.gz alpine_1.20.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  195k  100  195k    0     0   471k      0 --:--:-- --:--:-- --:--:--  473k

install for i386

* installing *source* package 'alpine' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'alpine'
    finding HTML links ... done
    alpine-package                          html  
    buildFragtypes                          html  
    estimateAbundance                       html  
    extractAlpine                           html  
    fitBiasModels                           html  
    getFragmentWidths                       html  
    getReadLength                           html  
    mergeGenes                              html  
    normalizeDESeq                          html  
    plotFragLen                             html  
    plotGC                                  html  
    plotGRL                                 html  
    plotOrder0                              html  
    plotRelPos                              html  
    predictCoverage                         html  
    preprocessedData                        html  
    splitGenesAcrossChroms                  html  
    splitLongGenes                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'alpine' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'alpine' as alpine_1.20.0.zip
* DONE (alpine)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'alpine' successfully unpacked and MD5 sums checked