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This page was generated on 2022-01-24 13:07:11 -0500 (Mon, 24 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.2 (2021-11-01) -- "Bird Hippie" 4329
tokay2Windows Server 2012 R2 Standardx644.1.2 (2021-11-01) -- "Bird Hippie" 4080
machv2macOS 10.14.6 Mojavex86_644.1.2 (2021-11-01) -- "Bird Hippie" 4141
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for VanillaICE on tokay2


To the developers/maintainers of the VanillaICE package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/VanillaICE.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 2035/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
VanillaICE 1.56.3  (landing page)
R.B. Scharpf
Snapshot Date: 2022-01-23 01:55:04 -0500 (Sun, 23 Jan 2022)
git_url: https://git.bioconductor.org/packages/VanillaICE
git_branch: RELEASE_3_14
git_last_commit: 65bbda3
git_last_commit_date: 2021-12-05 08:54:51 -0500 (Sun, 05 Dec 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: VanillaICE
Version: 1.56.3
Command: rm -rf VanillaICE.buildbin-libdir && mkdir VanillaICE.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=VanillaICE.buildbin-libdir VanillaICE_1.56.3.tar.gz
StartedAt: 2022-01-24 06:58:06 -0500 (Mon, 24 Jan 2022)
EndedAt: 2022-01-24 06:59:32 -0500 (Mon, 24 Jan 2022)
EllapsedTime: 86.7 seconds
RetCode: 0
Status:   OK  
PackageFile: VanillaICE_1.56.3.zip
PackageFileSize: 2.99 MiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf VanillaICE.buildbin-libdir && mkdir VanillaICE.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=VanillaICE.buildbin-libdir VanillaICE_1.56.3.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'VanillaICE' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c rinit.c -o rinit.o
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c viterbi.c -o viterbi.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o VanillaICE.dll tmp.def rinit.o viterbi.o -lm -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/VanillaICE.buildbin-libdir/00LOCK-VanillaICE/00new/VanillaICE/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm'
Creating a new generic function for 'distance' in package 'VanillaICE'
** help
*** installing help indices
  converting help for package 'VanillaICE'
    finding HTML links ... done
    ArrayViews-class                        html  
    CopyNumScanParams                       html  
    finding level-2 HTML links ... done

    EmissionParam-methods                   html  
    FilterParam-class                       html  
    HMM                                     html  
    HMMList-class                           html  
    HMMList                                 html  
    HmmGRanges-methods                      html  
    HmmParam                                html  
    HmmTrellisParam                         html  
    IO                                      html  
    IdiogramParam-class                     html  
    IdiogramParams-class                    html  
    LogLik-class                            html  
    LogLik                                  html  
    LowLevelSummaries                       html  
    NA_filter                               html  
    SnpArrayExperiment-class                html  
    SnpExperiment                           html  
    SnpGRanges                              html  
    TransitionParam                         html  
    VanillaICE                              html  
    Viterbi-methods                         html  
    acf2                                    html  
    baumWelchUpdate                         html  
    calculateEmission                       html  
    cnvFilter                               html  
    doUpdate                                html  
    dropDuplicatedMapLocs                   html  
    dropSexChrom                            html  
    emission                                html  
    emissionParam                           html  
REDIRECT:topic	 Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.14-bioc/meat/VanillaICE.buildbin-libdir/00LOCK-VanillaICE/00new/VanillaICE/help/emissionParam.html
    filters                                 html  
    getExampleSnpExperiment                 html  
    getHmmParams                            html  
    hmm2                                    html  
    hmmResults                              html  
    isHeterozygous                          html  
    matrixOrNULL-class                      html  
    numberFeatures                          html  
    parseSourceFile                         html  
    parsedPath                              html  
    plotting                                html  
    probability                             html  
    rescale                                 html  
    robust-statistics                       html  
    segs                                    html  
    snpArrayAssays                          html  
    snp_exp                                 html  
    sourcePaths                             html  
    start-oligoSnpSet-method                html  
    state-methods                           html  
    sweepMode                               html  
    threshold                               html  
    updateHmmParams                         html  
    viewports                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm'
** testing if installed package can be loaded from final location
No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm'
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'VanillaICE' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c rinit.c -o rinit.o
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c viterbi.c -o viterbi.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o VanillaICE.dll tmp.def rinit.o viterbi.o -lm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE/libs/x64
** testing if installed package can be loaded
No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm'
* MD5 sums
packaged installation of 'VanillaICE' as VanillaICE_1.56.3.zip
* DONE (VanillaICE)