############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/TreeSummarizedExperiment_2.2.0.tar.gz && rm -rf TreeSummarizedExperiment.buildbin-libdir && mkdir TreeSummarizedExperiment.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TreeSummarizedExperiment.buildbin-libdir TreeSummarizedExperiment_2.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL TreeSummarizedExperiment_2.2.0.zip && rm TreeSummarizedExperiment_2.2.0.tar.gz TreeSummarizedExperiment_2.2.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 369k 100 369k 0 0 532k 0 --:--:-- --:--:-- --:--:-- 533k install for i386 * installing *source* package 'TreeSummarizedExperiment' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'TreeSummarizedExperiment' finding HTML links ... done LinkDataFrame-class html LinkDataFrame-constructor html TreeSummarizedExperiment-accessor html TreeSummarizedExperiment-class html TreeSummarizedExperiment-combine html TreeSummarizedExperiment-constructor html finding level-2 HTML links ... done TreeSummarizedExperiment-internal html TreeeSummarizedExperiment-package html addLabel html aggTSE html aggValue html asLeaf html asPhylo html changeTree html convertNode html countLeaf html countNode html detectLoop html distNode html dot-all_equal_in_list html dot-all_have_DNAStringSet html dot-all_have_DNAStringSetList html dot-all_nonnull_in_list html dot-all_null_in_list html dot-any_null_in_list html dot-auto_rename_list html dot-bind_link_tree html dot-is_equal_link html dot-match_phylo html dot-match_phylo_list html dot-match_x_dupY html dot-name_y_with_x html dot-numeric_ij html dot-rbind_refSeq html dot-replace_link_tree_1d html dot-subset_leaf html dot-update_whichTree html findAncestor html findChild html findDescendant html findSibling html isLeaf html joinNode html makeTSE html matTree html phylo html printNode html resolveLoop html shareNode html showNode html tinyTree html toTree html trackNode html unionLeaf html updateObject-TreeSummarizedExperiment-method html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'TreeSummarizedExperiment' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'TreeSummarizedExperiment' as TreeSummarizedExperiment_2.2.0.zip * DONE (TreeSummarizedExperiment) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'TreeSummarizedExperiment' successfully unpacked and MD5 sums checked