############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ToxicoGx_1.4.0.tar.gz && rm -rf ToxicoGx.buildbin-libdir && mkdir ToxicoGx.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ToxicoGx.buildbin-libdir ToxicoGx_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ToxicoGx_1.4.0.zip && rm ToxicoGx_1.4.0.tar.gz ToxicoGx_1.4.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 22 4147k 22 923k 0 0 1224k 0 0:00:03 --:--:-- 0:00:03 1223k 73 4147k 73 3059k 0 0 1755k 0 0:00:02 0:00:01 0:00:01 1755k 100 4147k 100 4147k 0 0 1960k 0 0:00:02 0:00:02 --:--:-- 1961k install for i386 * installing *source* package 'ToxicoGx' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ToxicoGx' finding HTML links ... done HCC_sig html TGGATESsmall html ToxicoSet-class html ToxicoSet html ToxicoSig html annotation-set html annotation html availableTSets html checkTSetStructure html computeAUC html computeICn html computeLimmaDiffExpr-ToxicoSet-method html computeLimmaDiffExpr html curation-set html curation html datasetType-set html datasetType html dim-ToxicoSet-method html downloadTSet html drugGeneResponseCurve html drugInfo-set html drugInfo html drugNames-set html drugNames html drugPerturbationSig html drugTimeResponseCurve html geneDrugPerturbation html logLogisticRegression html mDataNames-ToxicoSet-method html name-ToxicoSet-method html sensitivityRaw-set html sensitivityRaw html sensitivitySlot-set html sensitivitySlot html show-ToxicoSet-method html show-ToxicoSig-method html showSigAnnot html sub-ToxicoSet-ANY-ANY-ANY-method html subsetTo html summarizeMolecularProfiles html summarizeSensitivityProfiles html updateCellId html updateDrugId html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'ToxicoGx' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'ToxicoGx' as ToxicoGx_1.4.0.zip * DONE (ToxicoGx) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'ToxicoGx' successfully unpacked and MD5 sums checked