Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:07:29 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for TOAST on tokay2


To the developers/maintainers of the TOAST package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TOAST.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1969/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
TOAST 1.8.3  (landing page)
Ziyi Li
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/TOAST
git_branch: RELEASE_3_14
git_last_commit: 80a747f
git_last_commit_date: 2022-03-24 14:39:53 -0400 (Thu, 24 Mar 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: TOAST
Version: 1.8.3
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/TOAST_1.8.3.tar.gz && rm -rf TOAST.buildbin-libdir && mkdir TOAST.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TOAST.buildbin-libdir TOAST_1.8.3.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL TOAST_1.8.3.zip && rm TOAST_1.8.3.tar.gz TOAST_1.8.3.zip
StartedAt: 2022-04-12 06:59:13 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 07:00:27 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 74.8 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/TOAST_1.8.3.tar.gz && rm -rf TOAST.buildbin-libdir && mkdir TOAST.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TOAST.buildbin-libdir TOAST_1.8.3.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL TOAST_1.8.3.zip && rm TOAST_1.8.3.tar.gz TOAST_1.8.3.zip
###
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##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0 2937k    0 12031    0     0   145k      0  0:00:20 --:--:--  0:00:20  145k
 64 2937k   64 1894k    0     0  1817k      0  0:00:01  0:00:01 --:--:-- 1818k
100 2937k  100 2937k    0     0  2028k      0  0:00:01  0:00:01 --:--:-- 2028k

install for i386

* installing *source* package 'TOAST' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'TOAST'
    finding HTML links ... done
    CBS_PBMC_array                          html  
    ChooseMarker                            html  
    DEVarSelect                             html  
    GetPrior                                html  
    MDeconv                                 html  
    RA_100samples                           html  
    Tsisal                                  html  
    assignCellType                          html  
    beta_emp                                html  
    cedar                                   html  
    csDeconv                                html  
    csTest                                  html  
    findRefinx                              html  
    fitModel                                html  
    makeDesign                              html  
    myRefFreeCellMix                        html  
    myRefFreeCellMixInitialize              html  
    myprojectMix                            html  
    plotCorr                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'TOAST' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TOAST' as TOAST_1.8.3.zip
* DONE (TOAST)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'TOAST' successfully unpacked and MD5 sums checked