############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/TFEA.ChIP_1.14.0.tar.gz && rm -rf TFEA.ChIP.buildbin-libdir && mkdir TFEA.ChIP.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TFEA.ChIP.buildbin-libdir TFEA.ChIP_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL TFEA.ChIP_1.14.0.zip && rm TFEA.ChIP_1.14.0.tar.gz TFEA.ChIP_1.14.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 6 3844k 6 260k 0 0 863k 0 0:00:04 --:--:-- 0:00:04 863k 58 3844k 58 2230k 0 0 1714k 0 0:00:02 0:00:01 0:00:01 1714k 100 3844k 100 3844k 0 0 2030k 0 0:00:01 0:00:01 --:--:-- 2030k install for i386 * installing *source* package 'TFEA.ChIP' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'TFEA.ChIP' finding HTML links ... done ARNT.metadata html ARNT.peaks.bed html DnaseHS_db html Entrez.gene.IDs html GR2tfbs_db html GSEA.result html GSEA_ESpermutations html GSEA_EnrichmentScore html GSEA_run html GeneID2entrez html Genes.Upreg html Mat01 html MetaData html Select_genes html contingency_matrix html getCMstats html get_LFC_bar html get_chip_index html gr.list html highlight_TF html hypoxia html hypoxia_DESeq html log2.FC html makeTFBSmatrix html plot_CM html plot_ES html plot_RES html preprocessInputData html rankTFs html set_user_data html tfbs.database html txt2GR html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'TFEA.ChIP' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'TFEA.ChIP' as TFEA.ChIP_1.14.0.zip * DONE (TFEA.ChIP) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'TFEA.ChIP' successfully unpacked and MD5 sums checked