############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/TAPseq_1.6.0.tar.gz && rm -rf TAPseq.buildbin-libdir && mkdir TAPseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TAPseq.buildbin-libdir TAPseq_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL TAPseq_1.6.0.zip && rm TAPseq_1.6.0.tar.gz TAPseq_1.6.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 50 2018k 50 1011k 0 0 1175k 0 0:00:01 --:--:-- 0:00:01 1175k 100 2018k 100 2018k 0 0 1464k 0 0:00:01 0:00:01 --:--:-- 1465k install for i386 * installing *source* package 'TAPseq' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'TAPseq' finding HTML links ... done TAPseq html TAPseqInput html TsIO-class html TsIOList-class html accessors html bone_marrow_genex html checkPrimers html check_tool_installation html chr11_genes html chr11_polyA_sites html chr11_primers html chr11_truncated_txs html chr11_truncated_txs_seq html createIORecord html designPrimers html estimateOffTargets html exportPrimers html getTxsSeq html get_gt_sequences html inferPolyASites html parsePrimer3Output html pickPrimers html selectTargetGenes html truncateTxsPolyA html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: Following software required by TAPseq is not installed or not in PATH: primer3_core makeblastdb blastn Please install these tools before trying to use this package! ** testing if installed package can be loaded from final location Warning: Following software required by TAPseq is not installed or not in PATH: primer3_core makeblastdb blastn Please install these tools before trying to use this package! ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'TAPseq' ... ** testing if installed package can be loaded Warning: Following software required by TAPseq is not installed or not in PATH: primer3_core makeblastdb blastn Please install these tools before trying to use this package! * MD5 sums packaged installation of 'TAPseq' as TAPseq_1.6.0.zip * DONE (TAPseq) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'TAPseq' successfully unpacked and MD5 sums checked