############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:SpidermiR.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings SpidermiR_1.24.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/SpidermiR.Rcheck' * using R version 4.1.3 (2022-03-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'SpidermiR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'SpidermiR' version '1.24.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'SpidermiR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Namespaces in Imports field not imported from: 'MAGeCKFlute' 'TCGAbiolinks' 'ggplot2' 'gplots' 'grDevices' 'gridExtra' 'lattice' 'latticeExtra' All declared Imports should be used. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... ** running examples for arch 'i386' ... ERROR Running examples in 'SpidermiR-Ex.R' failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: SpidermiRdownload_miRNAextra_cir > ### Title: Download miRNA validated database > ### Aliases: SpidermiRdownload_miRNAextra_cir > > ### ** Examples > > list<-SpidermiRdownload_miRNAextra_cir(miRNAextra_cir) Warning in file(file, "rt") : InternetOpenUrl failed: 'A connection with the server could not be established' Error in file(file, "rt") : cannot open the connection Calls: SpidermiRdownload_miRNAextra_cir -> read.delim -> read.table -> file Execution halted ** running examples for arch 'x64' ... ERROR Running examples in 'SpidermiR-Ex.R' failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: SpidermiRdownload_miRNAextra_cir > ### Title: Download miRNA validated database > ### Aliases: SpidermiRdownload_miRNAextra_cir > > ### ** Examples > > list<-SpidermiRdownload_miRNAextra_cir(miRNAextra_cir) Warning in file(file, "rt") : InternetOpenUrl failed: 'A connection with the server could not be established' Error in file(file, "rt") : cannot open the connection Calls: SpidermiRdownload_miRNAextra_cir -> read.delim -> read.table -> file Execution halted * checking PDF version of manual ... OK * DONE Status: 2 ERRORs, 1 NOTE See 'C:/Users/biocbuild/bbs-3.14-bioc/meat/SpidermiR.Rcheck/00check.log' for details.