############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/SpatialDecon_1.4.3.tar.gz && rm -rf SpatialDecon.buildbin-libdir && mkdir SpatialDecon.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SpatialDecon.buildbin-libdir SpatialDecon_1.4.3.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL SpatialDecon_1.4.3.zip && rm SpatialDecon_1.4.3.tar.gz SpatialDecon_1.4.3.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 18 3957k 18 728k 0 0 1139k 0 0:00:03 --:--:-- 0:00:03 1138k 64 3957k 64 2564k 0 0 1555k 0 0:00:02 0:00:01 0:00:01 1555k 100 3957k 100 3957k 0 0 1833k 0 0:00:02 0:00:02 --:--:-- 1833k install for i386 * installing *source* package 'SpatialDecon' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'SpatialDecon' finding HTML links ... done SpatialDecon-package html TIL_barplot html cellcols html collapseCellTypes html create_profile_matrix html derive_GeoMx_background html download_profile_matrix html florets html mean.resid.sd html mergeTumorIntoX html mini_geomx_dataset html mini_singleCell_dataset html nsclc html reverseDecon html runCollapseCellTypes-NanoStringGeoMxSet-method html runCollapseCellTypes html runErrorModel html runMergeTumorIntoX-NanoStringGeoMxSet-method html runMergeTumorIntoX html runReverseDecon-NanoStringGeoMxSet-method html runReverseDecon html runspatialdecon-NanoStringGeoMxSet-method html runspatialdecon-Seurat-method html runspatialdecon html safeTME html safeTME.matches html spatialdecon html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'SpatialDecon' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'SpatialDecon' as SpatialDecon_1.4.3.zip * DONE (SpatialDecon) * installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library' package 'SpatialDecon' successfully unpacked and MD5 sums checked