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### Running command:
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###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:SpatialDecon.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings SpatialDecon_1.4.3.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/SpatialDecon.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SpatialDecon/DESCRIPTION' ... OK
* this is package 'SpatialDecon' version '1.4.3'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SpatialDecon' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
download_profile_matrix: no visible binding for global variable
  'profile_matrix'
Undefined global functions or variables:
  profile_matrix
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                                 user system elapsed
runCollapseCellTypes-NanoStringGeoMxSet-method 102.36   0.47  102.84
runReverseDecon                                 96.19   0.10   96.30
runReverseDecon-NanoStringGeoMxSet-method       94.73   0.24   94.96
runCollapseCellTypes                            91.14   0.14   91.28
runspatialdecon                                 75.41   1.08   76.57
runspatialdecon-Seurat-method                   48.43   1.51   50.59
runspatialdecon-NanoStringGeoMxSet-method       22.24   0.10   22.33
runMergeTumorIntoX-NanoStringGeoMxSet-method    13.88   0.06   13.94
runMergeTumorIntoX                              13.87   0.05   13.92
runErrorModel                                   13.43   0.03   13.47
reverseDecon                                     9.39   0.01    9.41
spatialdecon                                     7.33   0.02    7.34
SpatialDecon-package                             6.70   0.12    6.83
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                                 user system elapsed
runReverseDecon-NanoStringGeoMxSet-method      117.39   0.05  117.44
runReverseDecon                                116.47   0.08  116.55
runCollapseCellTypes-NanoStringGeoMxSet-method 111.49   0.07  111.58
runCollapseCellTypes                           110.71   0.03  110.74
runspatialdecon                                 64.20   0.74   65.00
runspatialdecon-Seurat-method                   46.19   0.73   47.47
runspatialdecon-NanoStringGeoMxSet-method       24.53   0.06   24.59
runMergeTumorIntoX                              20.15   0.03   20.19
runMergeTumorIntoX-NanoStringGeoMxSet-method    18.19   0.00   18.18
runErrorModel                                   15.32   0.05   15.37
reverseDecon                                     9.72   0.00    9.72
SpatialDecon-package                             7.36   0.06    7.42
spatialdecon                                     6.75   0.00    6.75
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.14-bioc/meat/SpatialDecon.Rcheck/00check.log'
for details.